These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2672#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 707 fasta sequence [CCGAAACATCTCCATATCAGCAAAAACGCAAATACCCTTTTCGGAATAATTCACACTGCAAGTGTGACGCTCGTTTGTGGTGTGTGTGTGCTCCAAGTGCAGTAAAATTATTCTGTGAAAGGTTTAGTGTAATTGGTGCAGCAAAGAAGCGATAGGCCGTGCCGGTGTGCCGGAGGGGAAAATAAACAAAAGTGTTTAGAAAATAATTTAACTTATGAGTGCAAAGTGAAGTGAGACGAAAGTTTTGTTGTCAAACAAGTGAAATAAGGTTTTGATAGCAATATTAATCAGGCGTGGAGGAGGCATTAACGTGTACGCGGGAGTGTGTCAAATCGTTCGTGCCGTGTAGTGGTGGAAATCAATTGTGCAAAAGAAATCACCGCCAACGTGGATTACTAGCACCAGCACCATATCGTCGTCAACTGGTGTCGGGTAACCGCTTTCTGCTACCGTATCCAGCCGTATTGACGAGCCTTCGAACCTACACCCCGAAAAGATAAATTGAACGATTTCAATCAGTATCTGAACGGAAGTGTTTGGTAAGAATTAGAACTTATCTTTTCCATGAACATTAAAGTCAAGCACGGTGCAGTGCAACATCTAGCAGAGCGTTTAACGTCGTTGTTGGACACGATGATGCTACTCGTCAGATGAGAAATATATTTCATCGTTAACCAACAGAGCCAACAACATACGGACCGACCTGA] [+] EMBL BM577266 [CCGAAACATCTCCATATCAGCAAAAACGCAAATACCCTTTTCGGAATAATTCACACTGCAAGTGTGACGCTCGTTTGTGGTGTGTGTGTGCTCCAAGTGCAGTAAAATTATTCTGTGAAAGGTTTAGTGTAATTGGTGCAGCAAAGAAGCGATAGGCCGTGCCGGTGTGCCGGAGGGGAAAATAAACAAAAGTGTTTAGAAAATAATTTAACTTATGAGTGCAAAGTGAAGTGAGACGAAAGTTTTGTTGTCAAACAAGTGAAATAAGGTTTTGATAGCAATATTAATCAGGCGTGGAGGAGGCATTAACGTGTACGCGGGAGTGTGTCAAATCGTTCGTGCCGTGTAGTGGTGGAAATCAATTGTGCAAAAGAAATCACCGCCAACGTGGATTACTAGCACCAGCACCATATCGTCGTCAACTGGTGTCGGGTAACCGCTTTCTGCTACCGTATCCAGCCGTATTGACGAGCCTTCGAACCTACACCCCGAAAAGATAAATTGAACGATTTCAATCAGTATCTGAACGGAAGTGTTTGGTAAGAATTAGAACTTATCTTTTCCATGAACATTAAAGTCAAGCACGGTGCAGTGCAACATCTAGCAGAGCGTTTAACGTCGTTGTTGGACACGATGATGCTACTCGTCAGATGAGAAATATATTTCATCGTTAACCAACAGAGCCAACAACATACGGACCGACCTGA] consensusID : consensus_2672#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 535 fasta sequence [CCGAAATTATTCTGTGAAAGGTTTAGTGTAATTGGTGCAGCAAAGAAGCGATAGGCCGTGCCGGTGTGCCGGAGGGGAAAATAAACAAAAGTGTTTAGAAAATAATTTAACTTATGAGTGCAAAGTGAAGTGAGACGAAAGTTTTGTTGTCAAACAAGTGAAATAAGGTTTTGATAGCAATATTAATCAGGCGTGGAGGAGGCATTAACGTGTACGCGGGAGTGTGTCAAATCGTTCGTGCCGTGTAGTGGTGGAAATCAATTGTGCAAAAGAAATCACCGCCAACGTGGATTACTAGCACCAGCACCATATCGTCGTCAACTGGTGTCGGGTAACCGCTTTCTGCTACCGTATCCAGCCGTATTGACGAGCCTTCGAACCTACACCCCGAAAAGATAAATTGAACGATTTCAATCAGTATCTGAACGGAAGTGTTTGAACTTATCTTTTCCATGAACATTAAAGTCAAGCACGGTGCAGTGCAACATCTAGCAGAGCGTTTAACGTCGTTGTTGGACACGATGATGCTACTCGT] [+] EMBL BM630681 [CCGAAATTATTCTGTGAAAGGTTTAGTGTAATTGGTGCAGCAAAGAAGCGATAGGCCGTGCCGGTGTGCCGGAGGGGAAAATAAACAAAAGTGTTTAGAAAATAATTTAACTTATGAGTGCAAAGTGAAGTGAGACGAAAGTTTTGTTGTCAAACAAGTGAAATAAGGTTTTGATAGCAATATTAATCAGGCGTGGAGGAGGCATTAACGTGTACGCGGGAGTGTGTCAAATCGTTCGTGCCGTGTAGTGGTGGAAATCAATTGTGCAAAAGAAATCACCGCCAACGTGGATTACTAGCACCAGCACCATATCGTCGTCAACTGGTGTCGGGTAACCGCTTTCTGCTACCGTATCCAGCCGTATTGACGAGCCTTCGAACCTACACCCCGAAAAGATAAATTGAACGATTTCAATCAGTATCTGAACGGAAGTGTTTGAACTTATCTTTTCCATGAACATTAAAGTCAAGCACGGTGCAGTGCAACATCTAGCAGAGCGTTTAACGTCGTTGTTGGACACGATGATGCTACTCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2672#0 CCGAAACATCTCCATATCAGCAAAAACGCAAATACCCTTTTCGGAATAATTCACACTGCA 60 consensus_2672#1 ------------------------------------------------------------ consensus_2672#0 AGTGTGACGCTCGTTTGTGGTGTGTGTGTGCTCCAAGTGCAGTAAAATTATTCTGTGAAA 120 consensus_2672#1 -----------------------------------------CCGAAATTATTCTGTGAAA 19 **************** consensus_2672#0 GGTTTAGTGTAATTGGTGCAGCAAAGAAGCGATAGGCCGTGCCGGTGTGCCGGAGGGGAA 180 consensus_2672#1 GGTTTAGTGTAATTGGTGCAGCAAAGAAGCGATAGGCCGTGCCGGTGTGCCGGAGGGGAA 79 ************************************************************ consensus_2672#0 AATAAACAAAAGTGTTTAGAAAATAATTTAACTTATGAGTGCAAAGTGAAGTGAGACGAA 240 consensus_2672#1 AATAAACAAAAGTGTTTAGAAAATAATTTAACTTATGAGTGCAAAGTGAAGTGAGACGAA 139 ************************************************************ consensus_2672#0 AGTTTTGTTGTCAAACAAGTGAAATAAGGTTTTGATAGCAATATTAATCAGGCGTGGAGG 300 consensus_2672#1 AGTTTTGTTGTCAAACAAGTGAAATAAGGTTTTGATAGCAATATTAATCAGGCGTGGAGG 199 ************************************************************ consensus_2672#0 AGGCATTAACGTGTACGCGGGAGTGTGTCAAATCGTTCGTGCCGTGTAGTGGTGGAAATC 360 consensus_2672#1 AGGCATTAACGTGTACGCGGGAGTGTGTCAAATCGTTCGTGCCGTGTAGTGGTGGAAATC 259 ************************************************************ consensus_2672#0 AATTGTGCAAAAGAAATCACCGCCAACGTGGATTACTAGCACCAGCACCATATCGTCGTC 420 consensus_2672#1 AATTGTGCAAAAGAAATCACCGCCAACGTGGATTACTAGCACCAGCACCATATCGTCGTC 319 ************************************************************ consensus_2672#0 AACTGGTGTCGGGTAACCGCTTTCTGCTACCGTATCCAGCCGTATTGACGAGCCTTCGAA 480 consensus_2672#1 AACTGGTGTCGGGTAACCGCTTTCTGCTACCGTATCCAGCCGTATTGACGAGCCTTCGAA 379 ************************************************************ consensus_2672#0 CCTACACCCCGAAAAGATAAATTGAACGATTTCAATCAGTATCTGAACGGAAGTGTTTGG 540 consensus_2672#1 CCTACACCCCGAAAAGATAAATTGAACGATTTCAATCAGTATCTGAACGGAAGTGTTTG- 438 *********************************************************** consensus_2672#0 TAAGAATTAGAACTTATCTTTTCCATGAACATTAAAGTCAAGCACGGTGCAGTGCAACAT 600 consensus_2672#1 ----------AACTTATCTTTTCCATGAACATTAAAGTCAAGCACGGTGCAGTGCAACAT 488 ************************************************** consensus_2672#0 CTAGCAGAGCGTTTAACGTCGTTGTTGGACACGATGATGCTACTCGTCAGATGAGAAATA 660 consensus_2672#1 CTAGCAGAGCGTTTAACGTCGTTGTTGGACACGATGATGCTACTCGT------------- 535 *********************************************** consensus_2672#0 TATTTCATCGTTAACCAACAGAGCCAACAACATACGGACCGACCTGA 707 consensus_2672#1 ----------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||