cluster # 2688

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Anopheles gambiae
cluster # 2688 cluster # 2688 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2688#0 length = 662 sequences # 1

consensus_2688#1 length = 326 sequences # 1

consensusID : consensus_2688#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 662
fasta sequence

                              [CCGAACTTTGAAGGTTGCCACTGAAGGTGGTGTTTGCTGTGAAGATGCGGACGATCGTTTGTGTGGCGTTGCTTTGTATAAGCACCCTGTCGCTGACACACGGACAGCGACGGTTCCCTGAAGGGTTTAAGTTTGGCGTCGGTACATCGGCGTACCAGATCGAGGGAGGATGGAACGAGGACGGTAAGGGTGAATCGATTTGGGATCATTTGGTACACAACTATCCCGAGAAGATCGCTGACCGAACCAATGGAGATGTGGCCTGCGACTGTTACCATAATTGGCGTCGTGATGTGGAAATGATCCGCGAGCTCGGTGTCGATATCTATCGCTTCTCGCTTGCCTGGAGTCGCATACTCCCGACGGGCATCAGCAATCAGGTGAACGAGAAAGGTGTGGAATACTACAACAATCTTATCAACGAGCTGCTAAAGTATAACATCACACCGATGGTGACGCTGTTCCACTGGGACACACCGCAGCGGCTGCAGGAGATGGGAGGCTTTACAAACCGGCTTATTGTGGGATATTTCCGCGAGTATGCAAGGATTGCGTTCGAGCGATTTGGCGATCGGGTAAAGATCTGGACAACGTTCAACGAGCCGCCGCAAACCTGCCGTCTTCCGTACGAGTATGATGCGATGGCACCGGGGCTGGATTTT]

[+] EMBL BM603482             [CCGAACTTTGAAGGTTGCCACTGAAGGTGGTGTTTGCTGTGAAGATGCGGACGATCGTTTGTGTGGCGTTGCTTTGTATAAGCACCCTGTCGCTGACACACGGACAGCGACGGTTCCCTGAAGGGTTTAAGTTTGGCGTCGGTACATCGGCGTACCAGATCGAGGGAGGATGGAACGAGGACGGTAAGGGTGAATCGATTTGGGATCATTTGGTACACAACTATCCCGAGAAGATCGCTGACCGAACCAATGGAGATGTGGCCTGCGACTGTTACCATAATTGGCGTCGTGATGTGGAAATGATCCGCGAGCTCGGTGTCGATATCTATCGCTTCTCGCTTGCCTGGAGTCGCATACTCCCGACGGGCATCAGCAATCAGGTGAACGAGAAAGGTGTGGAATACTACAACAATCTTATCAACGAGCTGCTAAAGTATAACATCACACCGATGGTGACGCTGTTCCACTGGGACACACCGCAGCGGCTGCAGGAGATGGGAGGCTTTACAAACCGGCTTATTGTGGGATATTTCCGCGAGTATGCAAGGATTGCGTTCGAGCGATTTGGCGATCGGGTAAAGATCTGGACAACGTTCAACGAGCCGCCGCAAACCTGCCGTCTTCCGTACGAGTATGATGCGATGGCACCGGGGCTGGATTTT]




>consensus_2688#0
CCGAACTTTGAAGGTTGCCACTGAAGGTGGTGTTTGCTGTGAAGATGCGGACGATCGTTT
GTGTGGCGTTGCTTTGTATAAGCACCCTGTCGCTGACACACGGACAGCGACGGTTCCCTG
AAGGGTTTAAGTTTGGCGTCGGTACATCGGCGTACCAGATCGAGGGAGGATGGAACGAGG
ACGGTAAGGGTGAATCGATTTGGGATCATTTGGTACACAACTATCCCGAGAAGATCGCTG
ACCGAACCAATGGAGATGTGGCCTGCGACTGTTACCATAATTGGCGTCGTGATGTGGAAA
TGATCCGCGAGCTCGGTGTCGATATCTATCGCTTCTCGCTTGCCTGGAGTCGCATACTCC
CGACGGGCATCAGCAATCAGGTGAACGAGAAAGGTGTGGAATACTACAACAATCTTATCA
ACGAGCTGCTAAAGTATAACATCACACCGATGGTGACGCTGTTCCACTGGGACACACCGC
AGCGGCTGCAGGAGATGGGAGGCTTTACAAACCGGCTTATTGTGGGATATTTCCGCGAGT
ATGCAAGGATTGCGTTCGAGCGATTTGGCGATCGGGTAAAGATCTGGACAACGTTCAACG
AGCCGCCGCAAACCTGCCGTCTTCCGTACGAGTATGATGCGATGGCACCGGGGCTGGATT
TT

consensusID : consensus_2688#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 326
fasta sequence

                              [AATCGCCCGAGCGGCGTACAGATCGAGGGAGGATGGAACGAGGACGGTAAGGGTGAATCGATTTGGGATCATTTGGTACACAACTATCCCGAGAAGATCGCTGACCGAACCAATGGAGATGTGGCCTGTGACAGTTACCATAATTGGCGTCGTGATGTGGAAATGATCCGCGAGCTCGGTGTCGATATCTATCGCTTCTCGCTTGCCTGGAGTCGCATTACTCCCCAACAGGCATCAGCCAATCAGGTGAACGAGAAACGGTGTGGAATACTACAACAAAGTCTTTATTCAAACGGAGGCCTGCNTAAAGGTATAACCATCACAAC]

[+] EMBL AL934662             [AATCGCCCGAGCGGCGTACAGATCGAGGGAGGATGGAACGAGGACGGTAAGGGTGAATCGATTTGGGATCATTTGGTACACAACTATCCCGAGAAGATCGCTGACCGAACCAATGGAGATGTGGCCTGTGACAGTTACCATAATTGGCGTCGTGATGTGGAAATGATCCGCGAGCTCGGTGTCGATATCTATCGCTTCTCGCTTGCCTGGAGTCGCATTACTCCCCAACAGGCATCAGCCAATCAGGTGAACGAGAAACGGTGTGGAATACTACAACAAAGTCTTTATTCAAACGGAGGCCTGCNTAAAGGTATAACCATCACAAC]




>consensus_2688#1
AATCGCCCGAGCGGCGTACAGATCGAGGGAGGATGGAACGAGGACGGTAAGGGTGAATCG
ATTTGGGATCATTTGGTACACAACTATCCCGAGAAGATCGCTGACCGAACCAATGGAGAT
GTGGCCTGTGACAGTTACCATAATTGGCGTCGTGATGTGGAAATGATCCGCGAGCTCGGT
GTCGATATCTATCGCTTCTCGCTTGCCTGGAGTCGCATTACTCCCCAACAGGCATCAGCC
AATCAGGTGAACGAGAAACGGTGTGGAATACTACAACAAAGTCTTTATTCAAACGGAGGC
CTGCNTAAAGGTATAACCATCACAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2688#0      CCGAACTTTGAAGGTTGCCACTGAAGGTGGTGTTTGCTGTGAAGATGCGGACGATCGTTT 60
consensus_2688#1      ------------------------------------------------------------
                                                                                  

consensus_2688#0      GTGTGGCGTTGCTTTGTATAAGCACCCTGTCGCTGACACACGGACAGCGACGGTTCCCTG 120
consensus_2688#1      ------------------------------------------------------------
                                                                                  

consensus_2688#0      AAGGGTTTAAGTTTGGCGTCGGTACATCGGCGTACCAGATCGAGGGAGGATGGAACGAGG 180
consensus_2688#1      ----------------AATCGCCCGAGCGGCGTAC-AGATCGAGGGAGGATGGAACGAGG 43
                                        ***    * ******** ************************

consensus_2688#0      ACGGTAAGGGTGAATCGATTTGGGATCATTTGGTACACAACTATCCCGAGAAGATCGCTG 240
consensus_2688#1      ACGGTAAGGGTGAATCGATTTGGGATCATTTGGTACACAACTATCCCGAGAAGATCGCTG 103
                      ************************************************************

consensus_2688#0      ACCGAACCAATGGAGATGTGGCCTGCGACTGTTACCATAATTGGCGTCGTGATGTGGAAA 300
consensus_2688#1      ACCGAACCAATGGAGATGTGGCCTGTGACAGTTACCATAATTGGCGTCGTGATGTGGAAA 163
                      ************************* *** ******************************

consensus_2688#0      TGATCCGCGAGCTCGGTGTCGATATCTATCGCTTCTCGCTTGCCTGGAGTCGCAT-ACTC 359
consensus_2688#1      TGATCCGCGAGCTCGGTGTCGATATCTATCGCTTCTCGCTTGCCTGGAGTCGCATTACTC 223
                      ******************************************************* ****

consensus_2688#0      CC-GACGGGCATCAGC-AATCAGGTGAACGAGAAA-GGTGTGGAATACTACAACAATCTT 416
consensus_2688#1      CCCAACAGGCATCAGCCAATCAGGTGAACGAGAAACGGTGTGGAATACTACAACAAAGTC 283
                      **  ** ********* ****************** ********************  * 

consensus_2688#0      ATCAACGAGCTGCTAAA--GTATAACATCACACCGATGGTGACGCTGTTCCACTGGGACA 474
consensus_2688#1      TTTATTCAAACGGAGGCCTGCNTAAAGGTATAACCATCACAAC----------------- 326
                       * *   *   *       *  ***    * * * **    **                 

consensus_2688#0      CACCGCAGCGGCTGCAGGAGATGGGAGGCTTTACAAACCGGCTTATTGTGGGATATTTCC 534
consensus_2688#1      ------------------------------------------------------------
                                                                                  

consensus_2688#0      GCGAGTATGCAAGGATTGCGTTCGAGCGATTTGGCGATCGGGTAAAGATCTGGACAACGT 594
consensus_2688#1      ------------------------------------------------------------
                                                                                  

consensus_2688#0      TCAACGAGCCGCCGCAAACCTGCCGTCTTCCGTACGAGTATGATGCGATGGCACCGGGGC 654
consensus_2688#1      ------------------------------------------------------------
                                                                                  

consensus_2688#0      TGGATTTT 662
consensus_2688#1      --------