cluster # 2689

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Anopheles gambiae
cluster # 2689 cluster # 2689 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2689#0 length = 537 sequences # 1

consensus_2689#1 length = 410 sequences # 1

consensusID : consensus_2689#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 537
fasta sequence

                              [GCAAAACGGACGTATCGGTGGCGTCGGTCACATCAACAGCTAGTCATCATCTCTATCACCATCCGCAGCATCCACTGTCACCACACCACCAGTATCAGGGATCACTGTACTTGGGGAAGGAACCATTAGCCGTTGGCTCCAAATCTCCGATAATGGCGGAATCCATCAATCACGCACATTATCAGGGCCAGCTTGGATCTACTCGGTACGGATATGGCGCCAAGAAACGGTCCCCTAGCTACGGTGGAGGGAGTGGCACTGCAGCATCTCCTGGGGCTACCTCCGGAGGGAGCAGCGTGGATCCCGTGTGCTAATACGATCCGTTCCCCCAGACCTAAGTCCTAGTCCTGAGCATCATCATCATCAGCAGCCGCAGCATCAGCATCAGCACCAACAGCANNAGCAGTNCCATACATCTGCGCAACATTCACATCATGGGCTTCATCATACGCNNGGTNCTGCTTCATCAGGCNGATTTTCACGCTACCGACAGCCACCGTACGGTGGCAGCCCCAAGTANCTACTCGGTCTGCAACC]

[+] EMBL BX619925             [GCAAAACGGACGTATCGGTGGCGTCGGTCACATCAACAGCTAGTCATCATCTCTATCACCATCCGCAGCATCCACTGTCACCACACCACCAGTATCAGGGATCACTGTACTTGGGGAAGGAACCATTAGCCGTTGGCTCCAAATCTCCGATAATGGCGGAATCCATCAATCACGCACATTATCAGGGCCAGCTTGGATCTACTCGGTACGGATATGGCGCCAAGAAACGGTCCCCTAGCTACGGTGGAGGGAGTGGCACTGCAGCATCTCCTGGGGCTACCTCCGGAGGGAGCAGCGTGGATCCCGTGTGCTAATACGATCCGTTCCCCCAGACCTAAGTCCTAGTCCTGAGCATCATCATCATCAGCAGCCGCAGCATCAGCATCAGCACCAACAGCANNAGCAGTNCCATACATCTGCGCAACATTCACATCATGGGCTTCATCATACGCNNGGTNCTGCTTCATCAGGCNGATTTTCACGCTACCGACAGCCACCGTACGGTGGCAGCCCCAAGTANCTACTCGGTCTGCAACC]




>consensus_2689#0
GCAAAACGGACGTATCGGTGGCGTCGGTCACATCAACAGCTAGTCATCATCTCTATCACC
ATCCGCAGCATCCACTGTCACCACACCACCAGTATCAGGGATCACTGTACTTGGGGAAGG
AACCATTAGCCGTTGGCTCCAAATCTCCGATAATGGCGGAATCCATCAATCACGCACATT
ATCAGGGCCAGCTTGGATCTACTCGGTACGGATATGGCGCCAAGAAACGGTCCCCTAGCT
ACGGTGGAGGGAGTGGCACTGCAGCATCTCCTGGGGCTACCTCCGGAGGGAGCAGCGTGG
ATCCCGTGTGCTAATACGATCCGTTCCCCCAGACCTAAGTCCTAGTCCTGAGCATCATCA
TCATCAGCAGCCGCAGCATCAGCATCAGCACCAACAGCANNAGCAGTNCCATACATCTGC
GCAACATTCACATCATGGGCTTCATCATACGCNNGGTNCTGCTTCATCAGGCNGATTTTC
ACGCTACCGACAGCCACCGTACGGTGGCAGCCCCAAGTANCTACTCGGTCTGCAACC

consensusID : consensus_2689#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 410
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGTCGGTGGCGTCGGTCACATCAACAGCTAGTCATCATCTCTATCACCATCCGCAGCATCCACTGTCACCACACCACCAGTATCAGGGATCACTGTACTTGGGGAAGGAACCATTAGCCGTTGGCTCCAAATCTCCGATAATGGCGGAATCCATCAATCACGCACATTATCAGGGCCAGCTTGGATCTACTCGGTACGGATATGGCGCCAAGAAACGGTCCCCTAGCTACGGTGGAGGGAGTGGCACTGCAGCATCTCCTGGGGCTACCTCCGGAGGGAGCAGCGTGGATCCGTGTGCTAATACGATCCGTTCCCCAGACCTAAGTCCTAGTCCTGAGCATCATCATCATCAGCAGCCGCAGCATCAGCATCAGCACCAACAGCA]

[+] EMBL BM638477             [CCGCGGACGCGTGGGCGGACGCGTGGGTCGGTGGCGTCGGTCACATCAACAGCTAGTCATCATCTCTATCACCATCCGCAGCATCCACTGTCACCACACCACCAGTATCAGGGATCACTGTACTTGGGGAAGGAACCATTAGCCGTTGGCTCCAAATCTCCGATAATGGCGGAATCCATCAATCACGCACATTATCAGGGCCAGCTTGGATCTACTCGGTACGGATATGGCGCCAAGAAACGGTCCCCTAGCTACGGTGGAGGGAGTGGCACTGCAGCATCTCCTGGGGCTACCTCCGGAGGGAGCAGCGTGGATCCGTGTGCTAATACGATCCGTTCCCCAGACCTAAGTCCTAGTCCTGAGCATCATCATCATCAGCAGCCGCAGCATCAGCATCAGCACCAACAGCA]




>consensus_2689#1
CCGCGGACGCGTGGGCGGACGCGTGGGTCGGTGGCGTCGGTCACATCAACAGCTAGTCAT
CATCTCTATCACCATCCGCAGCATCCACTGTCACCACACCACCAGTATCAGGGATCACTG
TACTTGGGGAAGGAACCATTAGCCGTTGGCTCCAAATCTCCGATAATGGCGGAATCCATC
AATCACGCACATTATCAGGGCCAGCTTGGATCTACTCGGTACGGATATGGCGCCAAGAAA
CGGTCCCCTAGCTACGGTGGAGGGAGTGGCACTGCAGCATCTCCTGGGGCTACCTCCGGA
GGGAGCAGCGTGGATCCGTGTGCTAATACGATCCGTTCCCCAGACCTAAGTCCTAGTCCT
GAGCATCATCATCATCAGCAGCCGCAGCATCAGCATCAGCACCAACAGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2689#0      -------------GCAAAACGGACGTATCGGTGGCGTCGGTCACATCAACAGCTAGTCAT 47
consensus_2689#1      CCGCGGACGCGTGGGCGGACGCGTGGGTCGGTGGCGTCGGTCACATCAACAGCTAGTCAT 60
                                   *    ***   *  *********************************

consensus_2689#0      CATCTCTATCACCATCCGCAGCATCCACTGTCACCACACCACCAGTATCAGGGATCACTG 107
consensus_2689#1      CATCTCTATCACCATCCGCAGCATCCACTGTCACCACACCACCAGTATCAGGGATCACTG 120
                      ************************************************************

consensus_2689#0      TACTTGGGGAAGGAACCATTAGCCGTTGGCTCCAAATCTCCGATAATGGCGGAATCCATC 167
consensus_2689#1      TACTTGGGGAAGGAACCATTAGCCGTTGGCTCCAAATCTCCGATAATGGCGGAATCCATC 180
                      ************************************************************

consensus_2689#0      AATCACGCACATTATCAGGGCCAGCTTGGATCTACTCGGTACGGATATGGCGCCAAGAAA 227
consensus_2689#1      AATCACGCACATTATCAGGGCCAGCTTGGATCTACTCGGTACGGATATGGCGCCAAGAAA 240
                      ************************************************************

consensus_2689#0      CGGTCCCCTAGCTACGGTGGAGGGAGTGGCACTGCAGCATCTCCTGGGGCTACCTCCGGA 287
consensus_2689#1      CGGTCCCCTAGCTACGGTGGAGGGAGTGGCACTGCAGCATCTCCTGGGGCTACCTCCGGA 300
                      ************************************************************

consensus_2689#0      GGGAGCAGCGTGGATCCCGTGTGCTAATACGATCCGTTCCCCCAGACCTAAGTCCTAGTC 347
consensus_2689#1      GGGAGCAGCGTGGATCC-GTGTGCTAATACGATCCGTTCCCC-AGACCTAAGTCCTAGTC 358
                      ***************** ************************ *****************

consensus_2689#0      CTGAGCATCATCATCATCAGCAGCCGCAGCATCAGCATCAGCACCAACAGCANNAGCAGT 407
consensus_2689#1      CTGAGCATCATCATCATCAGCAGCCGCAGCATCAGCATCAGCACCAACAGCA-------- 410
                      ****************************************************        

consensus_2689#0      NCCATACATCTGCGCAACATTCACATCATGGGCTTCATCATACGCNNGGTNCTGCTTCAT 467
consensus_2689#1      ------------------------------------------------------------
                                                                                  

consensus_2689#0      CAGGCNGATTTTCACGCTACCGACAGCCACCGTACGGTGGCAGCCCCAAGTANCTACTCG 527
consensus_2689#1      ------------------------------------------------------------
                                                                                  

consensus_2689#0      GTCTGCAACC 537
consensus_2689#1      ----------