These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2692#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2186 fasta sequence [GAAGATCGCTGCAGTCCCCAGAGTGCTCCTAGTCCACCGCATCATCACCACAGTAGCCAGAGCCCGACGAGCACGACCACGGTTACGATGGCAACGGCAAGTCCTGTGCCCGCCTGCACCACCACCACCAGCACCACCAGCACCTCTGGCGCTAGCGCGGCTAGTTCGCCTACCCGCGACGAGATGTCCGTAGTGGTACCGATCTCTCCGCTGCACATCAAGCAGGAACCGCTCGGCAGCGATGGACCGATGCCAGCGCAGCCACCTCACCACCACCAGCATCCCCACCACCACCAGCTACCCCATCATCCCCATCATCAGCATCATCCGCAGCAGCAGCCCTCCCCGCAGACCTCCCCGCCCGCCAGCATATCCTTTTCCATCACCAACATCCTGAGCGATCGGTTTGGCAAGGCAACGGCCGAACAGCAGCAGCAGCCCCATCCGCAATCTCCTGCCATCCGCGAACCGATCAGCCCCGGACCGATCCATCCCGCGGTGCTCCTGCCCTACCCACAGCACGTGCTCCACCCAGCGCATCATCCGGCCCTGCTCCATCCAGCGTACCACACCGGCCTTCACCATTACTACCAGCCGTCGCCATCGCATCCACAGCCGATTGTGCCCCAGCCTCAGCGAGCGTCTCTGGAGCGAAGGGACAGTCTGTTCCGGCCGTACGACATCAGCAAAAGTCCGCGCCTTTGCAGCAGCAATGGAAGCAGCTCGGCCACCCCTCTGCCCCTCCATCCGTACCACACGGACAGCGATTGCTCGACGCAGGATTCAACGTCCGCCCCGAGTCCCGCCACGTACGGTGATATCGCTTCGCCCTCGTCCGCCTCCTCCGCCATGACCACGCCGGCCACTACCAGCAGTCCCACGGGCAGTGTGTACGACTATAGCCGCAAAGCGAGCGCCCTGGACCATCGAGCCGCGCTGCTGAATGGATTCAGTGCAGCCGCCAGCTACCCCAAACTCCACGAAGAGATCATCAACAGGCCACCGCAAGTTCCAGGCGAACGTGATCGAATCGCAAACGAAGGCGGCACTGGCTGCGGCAGCCACGGCTGCTGCGGCGGCGCTTCCGCGACACCCCACAACATGCCACCGCTGGGCAGTTTGTGCAAGACGGTGTCACAGATCGGACAGCATGTGGCCGGTACGGGCAGCTTGAACGGATCGGGCAGTGCAACGAATGGGGCGTCGAATGGTGGTTCCGGTGCTCCGGCCACTGCCAAACCAACGCCAAAGCCCATCCCAAAACCAGCGCCGAGCTCGGAAACCAATGGTTCCTCGTCGCAGGAGCGTGGCATGGAGTCGTCGGACGATGCGAAGTCGGAAACGAGCAGCACCAAGGATGGAAGCGAAAATGGCAGCAATCTGTGGCCGGCCTGGGTGTACTGCACGCGGTACAGCGATCGTCCAAGCTCTGGTCCTCGCTACAGACGCACGAAGCAACCGAAGAAAAGGGCGGACAGTGAGGAGAAGCGCCCACGAACAGCCTTTTCCAATGCGCAACTGCAAAGACTGAAGAATGAGTTCAACGAAAATCGCTATCTGACGGAAAAGCGGCGGCAAACGCTCAGTGCCGAGCTGGGGCTGAACGAGGCGCAAATCAAGATCTGGTTCCAGAACAAGCGGGCCAAGATCAAGAAGAGCTCGTCGGAGAAGAACCCGCTCGCCCTCCAGCTGATGGCCCAAGGTCTGTACAATCACTCGACCGTGCCGCTCACGAAGGAGGAGGAAGAGCTCGAGATGCGCATGAACGGACAGATCCCGTAAAAAAAAAAATAAAACGGAAACGCATTCGGACGGATCGCAGATACACACACACACACATGCTTGACAACCATCCTATCCCCAACTTTCACCCACCTTCTAACAGGGTACAAATAGCGGACGTCCCTACAGAAGAACGATGGCTTAGTTGGTTCGTGGTGCAATAGTAAGAGACGAGAGAGAGACGAGAGAGCGCGTAAGAAAAGGATCAACAAGCAACAAGGTGTGGTATGGTGGTGAGACGTCCGGAAGCGACGAGGACAGCAAGAATCAAAGCAATACTATAAAGTGGCTAGTACAACGCGACAAGGATACCTACTTTAAATTGATAAGGGTTACAGATGTTTGTAAATTATTATTCCTCCATTTTCCGACAGCTCTCTCGCGCTCTTCTCTGCTTGAATATT] [+] EMBL AGU42429 [GAAGATCGCTGCAGTCCCCAGAGTGCTCCTAGTCCACCGCATCATCACCACAGTAGCCAGAGCCCGACGAGCACGACCACGGTTACGATGGCAACGGCAAGTCCTGTGCCCGCCTGCACCACCACCACCAGCACCACCAGCACCTCTGGCGCTAGCGCGGCTAGTTCGCCTACCCGCGACGAGATGTCCGTAGTGGTACCGATCTCTCCGCTGCACATCAAGCAGGAACCGCTCGGCAGCGATGGACCGATGCCAGCGCAGCCACCTCACCACCACCAGCATCCCCACCACCACCAGCTACCCCATCATCCCCATCATCAGCATCATCCGCAGCAGCAGCCCTCCCCGCAGACCTCCCCGCCCGCCAGCATATCCTTTTCCATCACCAACATCCTGAGCGATCGGTTTGGCAAGGCAACGGCCGAACAGCAGCAGCAGCCCCATCCGCAATCTCCTGCCATCCGCGAACCGATCAGCCCCGGACCGATCCATCCCGCGGTGCTCCTGCCCTACCCACAGCACGTGCTCCACCCAGCGCATCATCCGGCCCTGCTCCATCCAGCGTACCACACCGGCCTTCACCATTACTACCAGCCGTCGCCATCGCATCCACAGCCGATTGTGCCCCAGCCTCAGCGAGCGTCTCTGGAGCGAAGGGACAGTCTGTTCCGGCCGTACGACATCAGCAAAAGTCCGCGCCTTTGCAGCAGCAATGGAAGCAGCTCGGCCACCCCTCTGCCCCTCCATCCGTACCACACGGACAGCGATTGCTCGACGCAGGATTCAACGTCCGCCCCGAGTCCCGCCACGTACGGTGATATCGCTTCGCCCTCGTCCGCCTCCTCCGCCATGACCACGCCGGCCACTACCAGCAGTCCCACGGGCAGTGTGTACGACTATAGCCGCAAAGCGAGCGCCCTGGACCATCGAGCCGCGCTGCTGAATGGATTCAGTGCAGCCGCCAGCTACCCCAAACTCCACGAAGAGATCATCAACAGGCCACCGCAAGTTCCAGGCGAACGTGATCGAATCGCAAACGAAGGCGGCACTGGCTGCGGCAGCCACGGCTGCTGCGGCGGCGCTTCCGCGACACCCCACAACATGCCACCGCTGGGCAGTTTGTGCAAGACGGTGTCACAGATCGGACAGCATGTGGCCGGTACGGGCAGCTTGAACGGATCGGGCAGTGCAACGAATGGGGCGTCGAATGGTGGTTCCGGTGCTCCGGCCACTGCCAAACCAACGCCAAAGCCCATCCCAAAACCAGCGCCGAGCTCGGAAACCAATGGTTCCTCGTCGCAGGAGCGTGGCATGGAGTCGTCGGACGATGCGAAGTCGGAAACGAGCAGCACCAAGGATGGAAGCGAAAATGGCAGCAATCTGTGGCCGGCCTGGGTGTACTGCACGCGGTACAGCGATCGTCCAAGCTCTGGTCCTCGCTACAGACGCACGAAGCAACCGAAGAAAAGGGCGGACAGTGAGGAGAAGCGCCCACGAACAGCCTTTTCCAATGCGCAACTGCAAAGACTGAAGAATGAGTTCAACGAAAATCGCTATCTGACGGAAAAGCGGCGGCAAACGCTCAGTGCCGAGCTGGGGCTGAACGAGGCGCAAATCAAGATCTGGTTCCAGAACAAGCGGGCCAAGATCAAGAAGAGCTCGTCGGAGAAGAACCCGCTCGCCCTCCAGCTGATGGCCCAAGGTCTGTACAATCACTCGACCGTGCCGCTCACGAAGGAGGAGGAAGAGCTCGAGATGCGCATGAACGGACAGATCCCGTAAAAAAAAAAATAAAACGGAAACGCATTCGGACGGATCGCAGATACACACACACACACATGCTTGACAACCATCCTATCCCCAACTTTCACCCACCTTCTAACAGGGTACAAATAGCGGACGTCCCTACAGAAGAACGATGGCTTAGTTGGTTCGTGGTGCAATAGTAAGAGACGAGAGAGAGACGAGAGAGCGCGTAAGAAAAGGATCAACAAGCAACAAGGTGTGGTATGGTGGTGAGACGTCCGGAAGCGACGAGGACAGCAAGAATCAAAGCAATACTATAAAGTGGCTAGTACAACGCGACAAGGATACCTACTTTAAATTGATAAGGGTTACAGATGTTTGTAAATTATTATTCCTCCATTTTCCGACAGCTCTCTCGCGCTCTTCTCTGCTTGAATATT] consensusID : consensus_2692#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 640 fasta sequence [GAGCCCGATATCGCCCCTCTCGTCGACGGGTTCGCTGAAGGGTGTGGACCATCAGTCGAGTGGCCAAGGTGGTTCGAGTGCAACGGGAGCGAATGGTGGTGCTAGTGGTGGTGGTGCTGGAAGTACCGGGTCCAGTTCCGGGTCTGGCAGCTCGGGATCCGGTTCCGGAGGGCCGATGGTGTGGCCGGCCTGGGTGTACTGCACGCGGTACAGCGATCGACCTAGTTCAGGAAGAAGTCCACGGACGCGCAAACCAAAGAAAAGCCCGGCGGAAAAGAGTAGCAGCGGCCCGGCACAACAGAGTGCCTCGGCGGCGGCCCTCGCCGATGACAAGCGACCCCGGACGGCGTTCAGCGGGCCCCAGCTGGCACGATTAAAGCACGAGTTTGCCGAGAATCGGTACCTTACCGAGCGCCGTCGCCAGCAGTTGAGTGCGGAGCTGGGGCTGAACGAGGCACAGATCAAGATCTGGTTCCAGAACAAGCGCGCCAAAATCAAGAAATCGTCCGGCCAGAAGAACCCGCTCGCCCTCCAGCTGATGGCCCAGGGTCTGTACAATCACTCGACCGTCCCGTTGACCCGCGAGGAGGAGGAACTGCAGGAGATGCAGGCGGCAGCAGCGGCGGCAGCCGAATCGCGC] [+] EMBL BX621502 [GAGCCCGATATCGCCCCTCTCGTCGACGGGTTCGCTGAAGGGTGTGGACCATCAGTCGAGTGGCCAAGGTGGTTCGAGTGCAACGGGAGCGAATGGTGGTGCTAGTGGTGGTGGTGCTGGAAGTACCGGGTCCAGTTCCGGGTCTGGCAGCTCGGGATCCGGTTCCGGAGGGCCGATGGTGTGGCCGGCCTGGGTGTACTGCACGCGGTACAGCGATCGACCTAGTTCAGGAAGAAGTCCACGGACGCGCAAACCAAAGAAAAGCCCGGCGGAAAAGAGTAGCAGCGGCCCGGCACAACAGAGTGCCTCGGCGGCGGCCCTCGCCGATGACAAGCGACCCCGGACGGCGTTCAGCGGGCCCCAGCTGGCACGATTAAAGCACGAGTTTGCCGAGAATCGGTACCTTACCGAGCGCCGTCGCCAGCAGTTGAGTGCGGAGCTGGGGCTGAACGAGGCACAGATCAAGATCTGGTTCCAGAACAAGCGCGCCAAAATCAAGAAATCGTCCGGCCAGAAGAACCCGCTCGCCCTCCAGCTGATGGCCCAGGGTCTGTACAATCACTCGACCGTCCCGTTGACCCGCGAGGAGGAGGAACTGCAGGAGATGCAGGCGGCAGCAGCGGCGGCAGCCGAATCGCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2692#0 GAAGATCGCTGCAGTCCCCAGAGTGCTCCTAGTCCACCGCATCATCACCACAGTAGCCAG 60 consensus_2692#1 ------------------------------------------------------------ consensus_2692#0 AGCCCGACGAGCACGACCACGGTTACGATGGCAACGGCAAGTCCTGTGCCCGCCTGCACC 120 consensus_2692#1 ------------------------------------------------------------ consensus_2692#0 ACCACCACCAGCACCACCAGCACCTCTGGCGCTAGCGCGGCTAGTTCGCCTACCCGCGAC 180 consensus_2692#1 ------------------------------------------------------------ consensus_2692#0 GAGATGTCCGTAGTGGTACCGATCTCTCCGCTGCACATCAAGCAGGAACCGCTCGGCAGC 240 consensus_2692#1 ------------------------------------------------------------ consensus_2692#0 GATGGACCGATGCCAGCGCAGCCACCTCACCACCACCAGCATCCCCACCACCACCAGCTA 300 consensus_2692#1 ------------------------------------------------------------ consensus_2692#0 CCCCATCATCCCCATCATCAGCATCATCCGCAGCAGCAGCCCTCCCCGCAGACCTCCCCG 360 consensus_2692#1 ------------------------------------------------------------ consensus_2692#0 CCCGCCAGCATATCCTTTTCCATCACCAACATCCTGAGCGATCGGTTTGGCAAGGCAACG 420 consensus_2692#1 ------------------------------------------------------------ consensus_2692#0 GCCGAACAGCAGCAGCAGCCCCATCCGCAATCTCCTGCCATCCGCGAACCGATCAGCCCC 480 consensus_2692#1 ------------------------------------------------------------ consensus_2692#0 GGACCGATCCATCCCGCGGTGCTCCTGCCCTACCCACAGCACGTGCTCCACCCAGCGCAT 540 consensus_2692#1 ------------------------------------------------------------ consensus_2692#0 CATCCGGCCCTGCTCCATCCAGCGTACCACACCGGCCTTCACCATTACTACCAGCCGTCG 600 consensus_2692#1 ------------------------------------------------------------ consensus_2692#0 CCATCGCATCCACAGCCGATTGTGCCCCAGCCTCAGCGAGCGTCTCTGGAGCGAAGGGAC 660 consensus_2692#1 ------------------------------------------------------------ consensus_2692#0 AGTCTGTTCCGGCCGTACGACATCAGCAAAAGTCCGCGCCTTTGCAGCAGCAATGGAAGC 720 consensus_2692#1 ------------------------------------------------------------ consensus_2692#0 AGCTCGGCCACCCCTCTGCCCCTCCATCCGTACCACACGGACAGCGATTGCTCGACGCAG 780 consensus_2692#1 ------------------------------------------------------------ consensus_2692#0 GATTCAACGTCCGCCCCGAGTCCCGCCACGTACGGTGATATCGCTTCGCCCTCGTCCGCC 840 consensus_2692#1 ------------------------------------------------------------ consensus_2692#0 TCCTCCGCCATGACCACGCCGGCCACTACCAGCAGTCCCACGGGCAGTGTGTACGACTAT 900 consensus_2692#1 ------------------------------------------------------------ consensus_2692#0 AGCCGCAAAGCGAGCGCCCTGGACCATCGAGCCGCGCTGCTGAATGGATTCAGTGCAGCC 960 consensus_2692#1 ------------------------------------------------------------ consensus_2692#0 GCCAGCTACCCCAAACTCCACGAAGAGATCATCAACAGGCCACCGCAAGTTCCAGGCGAA 1020 consensus_2692#1 ------------------------------------------------------------ consensus_2692#0 CGTGATCGAATCGCAAACGAAGGCGGCACTGGCTGCGGCAGCCACGGCTGCTGCGGCGGC 1080 consensus_2692#1 ------------------------------------------------------------ consensus_2692#0 GCTTCCGCGACACCCCACAACATGCCACCGCTGGGCAGTTTGTGCAAGACGGTGTCACAG 1140 consensus_2692#1 ---------GAGCCCGATATCGCCCCTCTCGTCGACGGGTT-CGCTGAAGGGTGT----- 45 *** * * * ** * * * * * ** ** * ***** consensus_2692#0 ATCGGACAGCATGTGGCCGGTACGGGCAGCTTGAACGGATCGGGCAGTGCAACGAATGGG 1200 consensus_2692#1 ---GGAC--CAT-----CAGT-CGAGTGGCCAAGGTGGTTCG---AGTGCAACGGGAG-- 89 **** *** * ** ** * ** ** *** ********* * consensus_2692#0 GCGTCGAATGGTGGTTCCGGTGCTCCGGCCACTGCCAAACCAACGCCAAAGCCCATCCCA 1260 consensus_2692#1 ----CGAATGGTGGTGCTAGTGGT---GGTGGTGCTGGA--AGTACCGGGTCCAGTTCCG 140 *********** * *** * * *** * * ** ** * ** consensus_2692#0 AAACCAGCGCCGAGCTCGGAAACCAATGGTTCCTCGTCGCAGGAGCGTGGCATGGAGTCG 1320 consensus_2692#1 GGTCTGGC----AGCTCGGGATCC---GGTTC-----CGGAGGGCCG----ATGGTGTGG 184 * ** ******* * ** ***** ** *** ** **** ** * consensus_2692#0 TCGGACGATGCGAAGTCGGAAACGAGCAGCACCAAGGATGGAAGCGAAAATGGCAGCAAT 1380 consensus_2692#1 CCGGCCTGGGTGTACT-----GCACGCGGTAC-AGCGATCGACCTAGTTCAGGAAGAAGT 238 *** * * * * * * ** * ** * *** ** ** ** * * consensus_2692#0 CTGTGGCCGGCCTGGGTGTACTGCACGCGGTACAGCGATCGTCCAAGCTCTGGTCCTCGC 1440 consensus_2692#1 CCACGGACGCGCAAACCAAAGAAAAGCCCGGCGGAAAAGAGT---AGCAGCGGCCC--GG 293 * ** ** * * * * * * ** *** ** ** * consensus_2692#0 TACAGACGCACGAAGCAACCGAAGAAAAGGGCGGACAGTGAGGAGAAGCGCCCACGAACA 1500 consensus_2692#1 CACA-----ACAGAGTGCCTC--GGCGGCGGCCCTCGCCGATGACAAGCGACCCCGGACG 346 *** ** ** * * *** * ** ** ***** ** ** ** consensus_2692#0 GCCTTTTCCAATGCGCAACTGCAAAGACTGAAGAATGAGTTCAACGAAAATCGCTATCTG 1560 consensus_2692#1 GCGTTCAGCGGGCCCCAGCTGGCACGATTAAAGCACGAGTTTGCCGAGAATCGGTACCTT 406 ** ** * * ** *** * ** * *** * ***** *** ***** ** ** consensus_2692#0 ACGGAAAAGCGGCGGCAAACGCTCAGTGCCGAGCTGGGGCTGAACGAGGCGCAAATCAAG 1620 consensus_2692#1 ACCGAGCGCCGTCGCCAGCAGTTGAGTGCGGAGCTGGGGCTGAACGAGGCACAGATCAAG 466 ** ** ** ** ** * * ***** ******************** ** ****** consensus_2692#0 ATCTGGTTCCAGAACAAGCGGGCCAAGATCAAGAAGAGCTCGTCGGAGAAGAACCCGCTC 1680 consensus_2692#1 ATCTGGTTCCAGAACAAGCGCGCCAAAATCAAGAAATCGTCCGGCCAGAAGAACCCGCTC 526 ******************** ***** ******** ** ************** consensus_2692#0 GCCCTCCAGCTGATGGCCCAAGGTCTGTACAATCACTCGACCGTGCCGCTCACGAAGGAG 1740 consensus_2692#1 GCCCTCCAGCTGATGGCCCAGGGTCTGTACAATCACTCGACCGTCCCGTTGACCCGCGAG 586 ******************** *********************** *** * ** *** consensus_2692#0 GAGGAAGAGCT-CGAGATGCGCATGAACGGACAGATCCCGTAAAAAAAAAAATAAAACGG 1799 consensus_2692#1 GAGGAGGAACTGCAGGAGATGCAGGCGGCAGCAG----CGGCGGCAGCCGAATCGCGC-- 640 ***** ** ** * ** *** * *** ** * *** * consensus_2692#0 AAACGCATTCGGACGGATCGCAGATACACACACACACACATGCTTGACAACCATCCTATC 1859 consensus_2692#1 ------------------------------------------------------------ consensus_2692#0 CCCAACTTTCACCCACCTTCTAACAGGGTACAAATAGCGGACGTCCCTACAGAAGAACGA 1919 consensus_2692#1 ------------------------------------------------------------ consensus_2692#0 TGGCTTAGTTGGTTCGTGGTGCAATAGTAAGAGACGAGAGAGAGACGAGAGAGCGCGTAA 1979 consensus_2692#1 ------------------------------------------------------------ consensus_2692#0 GAAAAGGATCAACAAGCAACAAGGTGTGGTATGGTGGTGAGACGTCCGGAAGCGACGAGG 2039 consensus_2692#1 ------------------------------------------------------------ consensus_2692#0 ACAGCAAGAATCAAAGCAATACTATAAAGTGGCTAGTACAACGCGACAAGGATACCTACT 2099 consensus_2692#1 ------------------------------------------------------------ consensus_2692#0 TTAAATTGATAAGGGTTACAGATGTTTGTAAATTATTATTCCTCCATTTTCCGACAGCTC 2159 consensus_2692#1 ------------------------------------------------------------ consensus_2692#0 TCTCGCGCTCTTCTCTGCTTGAATATT 2186 consensus_2692#1 --------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||