cluster # 271

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Anopheles gambiae
cluster # 271 cluster # 271 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_271#0 length = 651 sequences # 1

consensus_271#1 length = 628 sequences # 1

consensusID : consensus_271#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 651
fasta sequence

                              [AGGGCGTGTAAGGTAGAACCGCGTTCGTTCAGCGAGAACCGGCTATTGTTTCCTTTTCCCATCCCGCTTCGAAAGCATTTTTTGAAAATGTGTCCTTATAAATTATTTCAATTGTTTGTGCAAGAAAAAAAGCTCTCCCACGTGGCTTACAGGGTTTTCCAGGAGTTCTCATAGTTTTCATAGAGTTCTCAATTGGGAATTGGACTCTATAGCACCATTGTTGGAAAATTCCAGTAAGATTTTTCAATGAGTCTGGCCATAAAATCCAATTTCCAACATATGAAGTTCACTTCCAATAGGAAAGAATCAAGGAAATGTCCCACAGTTATGAGAACCACCGCGGAAACCCTGTACGACTGTTTTCTTTCAAATTGATGTTAATTGGATGGTATGTTTTAAAACGTTAAGCGTTATTGGGCCAGTATTGTGTGTTTTTTTTAAAGAAAATTAATTAAAAAGAGGATAAAAATGAGAACTGTTTAGGCAATTTAAAACCCTTCTGTTAGCGAATTAAACCAAAAAAAATTAGTGTTACCAAAATTCAAAACCACAAAACCCCCCTTCGCCCTCCCCCCCCTTCTATTGGAAACACAATGGCGCCATTAATGGTGATAACACCACCGTATGCATGTTTAACCGCACACGTACGCT]

[+] EMBL BX626859             [AGGGCGTGTAAGGTAGAACCGCGTTCGTTCAGCGAGAACCGGCTATTGTTTCCTTTTCCCATCCCGCTTCGAAAGCATTTTTTGAAAATGTGTCCTTATAAATTATTTCAATTGTTTGTGCAAGAAAAAAAGCTCTCCCACGTGGCTTACAGGGTTTTCCAGGAGTTCTCATAGTTTTCATAGAGTTCTCAATTGGGAATTGGACTCTATAGCACCATTGTTGGAAAATTCCAGTAAGATTTTTCAATGAGTCTGGCCATAAAATCCAATTTCCAACATATGAAGTTCACTTCCAATAGGAAAGAATCAAGGAAATGTCCCACAGTTATGAGAACCACCGCGGAAACCCTGTACGACTGTTTTCTTTCAAATTGATGTTAATTGGATGGTATGTTTTAAAACGTTAAGCGTTATTGGGCCAGTATTGTGTGTTTTTTTTAAAGAAAATTAATTAAAAAGAGGATAAAAATGAGAACTGTTTAGGCAATTTAAAACCCTTCTGTTAGCGAATTAAACCAAAAAAAATTAGTGTTACCAAAATTCAAAACCACAAAACCCCCCTTCGCCCTCCCCCCCCTTCTATTGGAAACACAATGGCGCCATTAATGGTGATAACACCACCGTATGCATGTTTAACCGCACACGTACGCT]




>consensus_271#0
AGGGCGTGTAAGGTAGAACCGCGTTCGTTCAGCGAGAACCGGCTATTGTTTCCTTTTCCC
ATCCCGCTTCGAAAGCATTTTTTGAAAATGTGTCCTTATAAATTATTTCAATTGTTTGTG
CAAGAAAAAAAGCTCTCCCACGTGGCTTACAGGGTTTTCCAGGAGTTCTCATAGTTTTCA
TAGAGTTCTCAATTGGGAATTGGACTCTATAGCACCATTGTTGGAAAATTCCAGTAAGAT
TTTTCAATGAGTCTGGCCATAAAATCCAATTTCCAACATATGAAGTTCACTTCCAATAGG
AAAGAATCAAGGAAATGTCCCACAGTTATGAGAACCACCGCGGAAACCCTGTACGACTGT
TTTCTTTCAAATTGATGTTAATTGGATGGTATGTTTTAAAACGTTAAGCGTTATTGGGCC
AGTATTGTGTGTTTTTTTTAAAGAAAATTAATTAAAAAGAGGATAAAAATGAGAACTGTT
TAGGCAATTTAAAACCCTTCTGTTAGCGAATTAAACCAAAAAAAATTAGTGTTACCAAAA
TTCAAAACCACAAAACCCCCCTTCGCCCTCCCCCCCCTTCTATTGGAAACACAATGGCGC
CATTAATGGTGATAACACCACCGTATGCATGTTTAACCGCACACGTACGCT

consensusID : consensus_271#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 628
fasta sequence

                              [TGTTCAGTCACTCTAGTAGCAGCAACCCACTGGAAGCGGTGTTTTGTTGCGATATACAAAACGCGTGGGAAGAAAAGCTCGCAAAAAAAATAAATGAAGAGAAAGGAGAAGAAAGACGTTAGAGAAAGAGAGAGAGAGAGAGAAAAAAAAACAAACAAACAAAAAAACCCTAAACAGAATATAGCGCTAAATTTTAATTAAAATTAACGTTACAAATGGTAAAAGGAATTAATAACAGAAGAAAGCCCTAAATCTACTACTTTTATTAATTCCTTTTACCATTTGTAACGCTAAATTTTAATTAAAATTAACGTTACAAATGGTAAAAGAAGAAATAAAGAAAACCAGCCCATACGAAATGGTGGGAGGAAATAGAAATCTCTAACTTAGTGACAGAGATGCTGAAAATCTATTGTTAGTCGAAATATTTACTAGGATACCGATGATTTAATGGCATAAGTGAATCACAAAACAACACATACACAAACACACACACGCACACCTATACACAACGACACATCAGACACGCGTACATCCCCAAATACACAGATGATAATGAATAAAACCTTTCTAGTTATAAAACAAAACAAACAGAGAAAGCCATGTCGTTGAATAATAAAAGTAAAAG]

[+] EMBL BX618167             [TGTTCAGTCACTCTAGTAGCAGCAACCCACTGGAAGCGGTGTTTTGTTGCGATATACAAAACGCGTGGGAAGAAAAGCTCGCAAAAAAAATAAATGAAGAGAAAGGAGAAGAAAGACGTTAGAGAAAGAGAGAGAGAGAGAGAAAAAAAAACAAACAAACAAAAAAACCCTAAACAGAATATAGCGCTAAATTTTAATTAAAATTAACGTTACAAATGGTAAAAGGAATTAATAACAGAAGAAAGCCCTAAATCTACTACTTTTATTAATTCCTTTTACCATTTGTAACGCTAAATTTTAATTAAAATTAACGTTACAAATGGTAAAAGAAGAAATAAAGAAAACCAGCCCATACGAAATGGTGGGAGGAAATAGAAATCTCTAACTTAGTGACAGAGATGCTGAAAATCTATTGTTAGTCGAAATATTTACTAGGATACCGATGATTTAATGGCATAAGTGAATCACAAAACAACACATACACAAACACACACACGCACACCTATACACAACGACACATCAGACACGCGTACATCCCCAAATACACAGATGATAATGAATAAAACCTTTCTAGTTATAAAACAAAACAAACAGAGAAAGCCATGTCGTTGAATAATAAAAGTAAAAG]




>consensus_271#1
TGTTCAGTCACTCTAGTAGCAGCAACCCACTGGAAGCGGTGTTTTGTTGCGATATACAAA
ACGCGTGGGAAGAAAAGCTCGCAAAAAAAATAAATGAAGAGAAAGGAGAAGAAAGACGTT
AGAGAAAGAGAGAGAGAGAGAGAAAAAAAAACAAACAAACAAAAAAACCCTAAACAGAAT
ATAGCGCTAAATTTTAATTAAAATTAACGTTACAAATGGTAAAAGGAATTAATAACAGAA
GAAAGCCCTAAATCTACTACTTTTATTAATTCCTTTTACCATTTGTAACGCTAAATTTTA
ATTAAAATTAACGTTACAAATGGTAAAAGAAGAAATAAAGAAAACCAGCCCATACGAAAT
GGTGGGAGGAAATAGAAATCTCTAACTTAGTGACAGAGATGCTGAAAATCTATTGTTAGT
CGAAATATTTACTAGGATACCGATGATTTAATGGCATAAGTGAATCACAAAACAACACAT
ACACAAACACACACACGCACACCTATACACAACGACACATCAGACACGCGTACATCCCCA
AATACACAGATGATAATGAATAAAACCTTTCTAGTTATAAAACAAAACAAACAGAGAAAG
CCATGTCGTTGAATAATAAAAGTAAAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_271#0      AGGGCGTGTAAGGTAGAACCGCGTTCGTTCAGCGAGAACCGGCTATTGTTTCCTTTTCCC 60
consensus_271#1      --TGTTCAGTCACTCTAGTAGCAGCAACCCACTGGAAGCGGTGTTTTGTTGCGATATAC- 57
                        *         *  *   **       **  *  * * *  * ***** *  * * * 

consensus_271#0      ATCCCGCTTCGAAAGCATTTTTTG---AAAATGTGTCCTTATAAATTATTTCAATTGTTT 117
consensus_271#1      AAAACGCGTGGGAAGAAAAGCTCGCAAAAAAAATAAATGAAGAGAAAGGAGAAGAAAGAC 117
                     *   *** * * *** *    * *   ****  *      * * *       *       

consensus_271#0      GTGCAAGAAAAAAAGCTCTCCCACGTGGCTTACAGGGTTTTCCAGGAGTTCTCATAGTTT 177
consensus_271#1      GTTAGAGAAAGAGAGAGAGAGAGAGAAAAAAAAACAAACAAACAAAAAAACCC-TAAACA 176
                     **   ***** * **         *      * *        **  *   * * **    

consensus_271#0      TCATAGAGTTCTCAATTGGGAATTGGACTCTATAGCACCATTGTTGGAA------AATTC 231
consensus_271#1      GAATATAGCGCTAAATTTT-AATTAAAATTAACGTTACAAATGGTAAAAGGAATTAATAA 235
                       *** **  ** ****   ****  * *  *    ** * ** *  **      ***  

consensus_271#0      CAGTAAGATTTTTCAATGAGTCTGGCCATAA-AATCCAATTTCCAACATATGAAGTTCAC 290
consensus_271#1      CAGAAGAAAGCCCTAAATCTACTACTTTTATTAATTCCTTTTACCATTTGTAACGCTAAA 295
                     *** *  *      **     **     **  *** *  *** * *  * * * * * * 

consensus_271#0      TTCCAATAGGAAAGAATCAAGGAAATGTCCCAC-----AGTTATGAGAACCACCGCG--- 342
consensus_271#1      TTTTAATTAAAATTAACGTTACAAATGGTAAAAGAAGAAATAAAGAAAACCAGCCCATAC 355
                     **  ***   **  **      *****    *      * * * ** ***** * *    

consensus_271#0      GAAACCCTGTACG--ACTGTTTTCTTTCAAATTGATGTTAATTGGATGGTATGTTTTAAA 400
consensus_271#1      GAAATGGTGGGAGGAAATAGAAATCTCTAACTTAGTGACAGAGATGCTGAAAATCT---A 412
                     ****   **   *  * *       *  ** **  **  *        * *  * *   *

consensus_271#0      ACGTTAAGCGTTAT-TGGGCCAGTATTGTGTGTTTTTTTTAAAGAAAATTAATTA-AAAA 458
consensus_271#1      TTGTTAGTCGAAATATTTACTAGGATACCGATGATTTAATGGCATAAGTGAATCACAAAA 472
                       ****  **  ** *   * ** **   *    ***  *     ** * *** * ****

consensus_271#0      GAGGATAAAAATGAGAACTGTTTAGGCAATTTAAAACCCTTCTGTTAGCGAATTAAACCA 518
consensus_271#1      CAACACATACACAAACAC-ACACACGCACACCTATACACAAC----GACACATCAGACAC 527
                      *  * * * *  *  **     * ***     * ** *  *      *  ** * **  

consensus_271#0      AAAAAAATTAGTGTTACCAAAATTCAAAACCACAAAACCCCCCTTCGCCCTCCCCCCCCT 578
consensus_271#1      GCGTACATCCCCAAATACACAGATGATAATGAATAAAACCTTTCTAGTTATAAAACAAAA 587
                         * **         ** *  * * **  *  *** **    * *   *    *    

consensus_271#0      TCTATTGGAAACACAATGGCGCC-ATTAATGGTGATAACACCACCGTATGCATGTTTAAC 637
consensus_271#1      CAAACAGAGAAAGCCATGTCGTTGAATAATAAAAGTAAAAG------------------- 628
                        *  *  **  * *** **   * ****     *** *                    

consensus_271#0      CGCACACGTACGCT 651
consensus_271#1      --------------