cluster # 2743

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Anopheles gambiae
cluster # 2743 cluster # 2743 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2743#0 length = 655 sequences # 1

consensus_2743#1 length = 576 sequences # 1

consensusID : consensus_2743#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 655
fasta sequence

                              [CCGCCCACTCCGGTATTGGGTATTCGTACCAGTCCCCCGGATTATATGTGAACACGTGCGTCGGTTGGAAGCGAAAATCGAGTGACAGCGGTGCTAGCTGCGGTACCGCCGAGACGACAGAGATTGTGCAGTGCCGGCACCAGCACCGGTTTGGAAGATCCGTTCCGGATGCCGCATCCATTGACACCGCCGAGAATTTATATCACGTCCGTGGAAGAGCCAGAAGCACCGGCCAGAAACGGTGGATCGAGCGTACCGACGGAACCGGACAGCCGTGCGCCCACCACCGTACCAGCGCCGATTCCGTCGATTGATTTGGCCATGGCACTGAGCAAACGGGAGGCCACCACCGATGGTGCACTGCCCCTCACCGGCATGGTGGTGGTGACGGCGGAGACGGCCGACACTGGCGATTGGCATCCGGTGCGAACGACCAGTCCATCCGTTGGCAATGGTGGCACCATCTCCGGCAGTCCAACGCCGGGACGGACCGCTGCCTTCGCTCGCAAATGCCCATCGCTGGGTGCGTAGTTGGCCAACCACGTCCCAACCGCTCGCGCTGCTGCTGCTGTTCGCGTTCCTTGTGGGCGATCGCGTACGCCATCCTGCCACCGGAGCTGTCCGAGCCCGGCCGGTGGGCTGATGCGGCTCGCCT]

[+] EMBL BM655474             [CCGCCCACTCCGGTATTGGGTATTCGTACCAGTCCCCCGGATTATATGTGAACACGTGCGTCGGTTGGAAGCGAAAATCGAGTGACAGCGGTGCTAGCTGCGGTACCGCCGAGACGACAGAGATTGTGCAGTGCCGGCACCAGCACCGGTTTGGAAGATCCGTTCCGGATGCCGCATCCATTGACACCGCCGAGAATTTATATCACGTCCGTGGAAGAGCCAGAAGCACCGGCCAGAAACGGTGGATCGAGCGTACCGACGGAACCGGACAGCCGTGCGCCCACCACCGTACCAGCGCCGATTCCGTCGATTGATTTGGCCATGGCACTGAGCAAACGGGAGGCCACCACCGATGGTGCACTGCCCCTCACCGGCATGGTGGTGGTGACGGCGGAGACGGCCGACACTGGCGATTGGCATCCGGTGCGAACGACCAGTCCATCCGTTGGCAATGGTGGCACCATCTCCGGCAGTCCAACGCCGGGACGGACCGCTGCCTTCGCTCGCAAATGCCCATCGCTGGGTGCGTAGTTGGCCAACCACGTCCCAACCGCTCGCGCTGCTGCTGCTGTTCGCGTTCCTTGTGGGCGATCGCGTACGCCATCCTGCCACCGGAGCTGTCCGAGCCCGGCCGGTGGGCTGATGCGGCTCGCCT]




>consensus_2743#0
CCGCCCACTCCGGTATTGGGTATTCGTACCAGTCCCCCGGATTATATGTGAACACGTGCG
TCGGTTGGAAGCGAAAATCGAGTGACAGCGGTGCTAGCTGCGGTACCGCCGAGACGACAG
AGATTGTGCAGTGCCGGCACCAGCACCGGTTTGGAAGATCCGTTCCGGATGCCGCATCCA
TTGACACCGCCGAGAATTTATATCACGTCCGTGGAAGAGCCAGAAGCACCGGCCAGAAAC
GGTGGATCGAGCGTACCGACGGAACCGGACAGCCGTGCGCCCACCACCGTACCAGCGCCG
ATTCCGTCGATTGATTTGGCCATGGCACTGAGCAAACGGGAGGCCACCACCGATGGTGCA
CTGCCCCTCACCGGCATGGTGGTGGTGACGGCGGAGACGGCCGACACTGGCGATTGGCAT
CCGGTGCGAACGACCAGTCCATCCGTTGGCAATGGTGGCACCATCTCCGGCAGTCCAACG
CCGGGACGGACCGCTGCCTTCGCTCGCAAATGCCCATCGCTGGGTGCGTAGTTGGCCAAC
CACGTCCCAACCGCTCGCGCTGCTGCTGCTGTTCGCGTTCCTTGTGGGCGATCGCGTACG
CCATCCTGCCACCGGAGCTGTCCGAGCCCGGCCGGTGGGCTGATGCGGCTCGCCT

consensusID : consensus_2743#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 576
fasta sequence

                              [AGGCAAGAATCGGCACGTAGGCGTGTGCGGAAGTGTGGTGCGATCGTTCAGTATCAATGTCGATGATCATTTCCACGTGAGGTGATCTTTATGTGAATTTCAACTTTGTCATCCGGTTTGGAAAGATTGTAATATGCCCATCGCTGGTGCGTAGTTGGCCGACCACGTCCCAACCGCTCGCGCTGCTGCTGCTGTTCGCGTTCCTGTGGGCGATCGCGTACGCCATCCTGCCACCGGAGCTGTCCGAGCCGGCCGGCGGGCTGATGCGGCTCGCCTTTCTGTTCGTGGGCGCCCAGGCCTGCGGCGTGCTCGTCTCGCTGACCGGCCTGCCCGACATGCTCGGCATGCTGTTCTGGGGCGTCCTGTACGCGAACGTTGGCTGGGCCGACTTTGCCGGGTACGAGCGGGTCGAGGTGTTTCTGCGCGAGATGGCACTCGTCAACATTATGCTGCTGGCCGGGCTCGGGCTGGACTACGACGCCCTCCGGTCGCTGTTTCGCTTCATCATGCAGCTCACGCTGGTGCCGACGGTGGCCGAGGTTGCGGCCGTGGCCGTACTCTCCCATTACCTGCTCG]

[+] EMBL BX468411             [AGGCAAGAATCGGCACGTAGGCGTGTGCGGAAGTGTGGTGCGATCGTTCAGTATCAATGTCGATGATCATTTCCACGTGAGGTGATCTTTATGTGAATTTCAACTTTGTCATCCGGTTTGGAAAGATTGTAATATGCCCATCGCTGGTGCGTAGTTGGCCGACCACGTCCCAACCGCTCGCGCTGCTGCTGCTGTTCGCGTTCCTGTGGGCGATCGCGTACGCCATCCTGCCACCGGAGCTGTCCGAGCCGGCCGGCGGGCTGATGCGGCTCGCCTTTCTGTTCGTGGGCGCCCAGGCCTGCGGCGTGCTCGTCTCGCTGACCGGCCTGCCCGACATGCTCGGCATGCTGTTCTGGGGCGTCCTGTACGCGAACGTTGGCTGGGCCGACTTTGCCGGGTACGAGCGGGTCGAGGTGTTTCTGCGCGAGATGGCACTCGTCAACATTATGCTGCTGGCCGGGCTCGGGCTGGACTACGACGCCCTCCGGTCGCTGTTTCGCTTCATCATGCAGCTCACGCTGGTGCCGACGGTGGCCGAGGTTGCGGCCGTGGCCGTACTCTCCCATTACCTGCTCG]




>consensus_2743#1
AGGCAAGAATCGGCACGTAGGCGTGTGCGGAAGTGTGGTGCGATCGTTCAGTATCAATGT
CGATGATCATTTCCACGTGAGGTGATCTTTATGTGAATTTCAACTTTGTCATCCGGTTTG
GAAAGATTGTAATATGCCCATCGCTGGTGCGTAGTTGGCCGACCACGTCCCAACCGCTCG
CGCTGCTGCTGCTGTTCGCGTTCCTGTGGGCGATCGCGTACGCCATCCTGCCACCGGAGC
TGTCCGAGCCGGCCGGCGGGCTGATGCGGCTCGCCTTTCTGTTCGTGGGCGCCCAGGCCT
GCGGCGTGCTCGTCTCGCTGACCGGCCTGCCCGACATGCTCGGCATGCTGTTCTGGGGCG
TCCTGTACGCGAACGTTGGCTGGGCCGACTTTGCCGGGTACGAGCGGGTCGAGGTGTTTC
TGCGCGAGATGGCACTCGTCAACATTATGCTGCTGGCCGGGCTCGGGCTGGACTACGACG
CCCTCCGGTCGCTGTTTCGCTTCATCATGCAGCTCACGCTGGTGCCGACGGTGGCCGAGG
TTGCGGCCGTGGCCGTACTCTCCCATTACCTGCTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2743#0      CCGCCCACTCCGGTATTGGGTATTCGTACCAGTCCCCCGGATTA-TATGTGAACACGTGC 59
consensus_2743#1      --------------------------------AGGCAAGAATCGGCACGTAGGCGTGTGC 28
                                                         *  * **    * **   *  ****

consensus_2743#0      GTCGGTTGGAAGCGAAAATCGAGTGACAGCGGTGCTAGCTGCGGTACCGCCGAGACGACA 119
consensus_2743#1      GGAAGTGTGGTGCGATCGTTCAGTATCAATGTCGATGATCATTTCCACGT-GAGGTGATC 87
                      *   **  *  ****   *  ***  **  *  * *           **  ***  **  

consensus_2743#0      GAGATTGTGCAGTGCCGGCACCAGCA-CCGGTTTGGAAGATCCGTTCCGGATGCCGCATC 178
consensus_2743#1      TTTAT-GTG-AATTTCAACTTTGTCATCCGGTTTGGAAAGATTGT-------AATATGCC 138
                         ** *** * *  *  *     ** ***********     **              *

consensus_2743#0      CATTGACACCGCCGAGAATTTATATCACGTCCGTGGAAGAGCCAGAAGCACCGGCCAGAA 238
consensus_2743#1      CATCGCTGGTGCGTAGTTGGCCGACCACGTCCC------AACCGCTCGCGCTGCT----- 187
                      *** *     **  **       * *******       * **    ** * *       

consensus_2743#0      ACGGTGGATCGAGCGTACCGACGGAACCGGACAGCCGTGCGCCCACCACCGTACCAGCGC 298
consensus_2743#1      GCTGCTGTTC--GCGTTCCTG------TGGGCGATCGCGTAC--GCCATCCTGCCA---C 234
                       * *  * **  **** **         ** *   ** *  *   *** * * ***   *

consensus_2743#0      CGATTCCGTCGATTGATTTGGCCATGGCACTGAGCAAACGGGAGGCCACCACCGATGGTG 358
consensus_2743#1      CGGAGCTGTC---CGAGCCGGCCGGCGGGCTGATGCGGCTCGCCTTTCTGTTCGTGGGCG 291
                      **   * ***    **   ****   *  ****     *  *          **  ** *

consensus_2743#0      CACTGCCCCTCACCGGCATGGTGGTGGTGACGGCGGAGACGGCCGACACTGGCGATTGGC 418
consensus_2743#1      CCCAGGCCTGC---GGCGTGCTCGTCTCGCTGACCGGCCTGCCCGACAT----GCTCGGC 344
                      * * * **  *   *** ** * **   *  * * *    * ******     * * ***

consensus_2743#0      ATCCGGTGCGAACGACCAGTCCATCCGTTGGCAATGGTGGCACCATCTCCGGCAGTCCAA 478
consensus_2743#1      ATGCTGTTCTGGGG--CGTCCTGTACGCGAACGTTGGCTGGGCCGACTTTGCCGGGTACG 402
                      ** * ** *    *  *   *  * **    *  ***  *  **  **  * * *     

consensus_2743#0      CGCCGGGACGGACCGCTGCCTTCGCTCGCAAATGCCCATCGCTGGGTGCGTAGTTGGCCA 538
consensus_2743#1      AGC-GGGTCGAGGTGTT-TCTGCGCGAGATGGCACTCGTCAACAT-TATGCTGCTGGCCG 459
                       ** *** **    * *  ** ***  *      * * **      *  *  * ***** 

consensus_2743#0      ACCACGTCCCA-ACCGCT-CGCGCTGCTGCTGCTGTTCGCGTTCCTTGTG-GGCGATCGC 595
consensus_2743#1      GGCTCGGGCTGGACTACGACGCCCTCCGGTCGCTGTTTCGCTTCATCATGCAGCTCACGC 519
                        * **  *   **  *  *** ** * *  ******    *** *  **  **   ***

consensus_2743#0      GTACGCCATCCTGCCACCGGAGCTGTCCGAGCCCGGCCGGTGGGCTGATGCGGCTCGCCT 655
consensus_2743#1      TGGTGCCGACG-GTGGCCGAGGTTG--CGGCCGTGGCCG-TACTCTCCCATTACCTGCTC 575
                          ***  *  *   ***  * **  **  *  ***** *   **       *  **  

consensus_2743#0      -
consensus_2743#1      G 576