These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_275#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 600 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGTTCTTCTCGAAATGAGTAGACCTCATTATCAAGCAAAAGAATTCCATCCATGGCAGTGGCGTACTTCTTTTTTTTTCTTTTCTTTTCTGTTCTCCTTATTCGTATCTCGCATTTGGTACGGTTTCTTTAATGTCTTGTGGGGTCTTCATATAAATAAGTGCGATGGTGTTTTTGGTTTTGTTTTTTTTTTGCTTTCGATCCTCGTTATTTTCTCCTTTACTTAGCAAACGATGGAACTTTAGCAATGAACGCGAGACTTCATTCATATTTATATGTGTACGCTTATTTGAACGTCTATGCGAGCGAGGAGTGTGAGTTGGCATGTATGTAAAGGACTTGTTTTGTTCCCTTGCTTCCAATCCTGAGTCGGCTTTCATGCCGAATACGTTACACTTTTTCGAGCCTTTCGTAGCTCTTCTTGCTTTCTTACCATTACAATGCCATTTCTGAGAACTCACGGGACAGAAATGTCCTTTCCGGATGATTCTTTTTTCAGGATTCATGACTACATGTCTGGTATTTTATATTATTTCTTCATAATTTAACGGTTTTGTTACACTTTTATTCAATTAG] [+] EMBL BM630866 [CCGCGGACGCGTGGGCGGACGCGTGGGTTCTTCTCGAAATGAGTAGACCTCATTATCAAGCAAAAGAATTCCATCCATGGCAGTGGCGTACTTCTTTTTTTTTCTTTTCTTTTCTGTTCTCCTTATTCGTATCTCGCATTTGGTACGGTTTCTTTAATGTCTTGTGGGGTCTTCATATAAATAAGTGCGATGGTGTTTTTGGTTTTGTTTTTTTTTTGCTTTCGATCCTCGTTATTTTCTCCTTTACTTAGCAAACGATGGAACTTTAGCAATGAACGCGAGACTTCATTCATATTTATATGTGTACGCTTATTTGAACGTCTATGCGAGCGAGGAGTGTGAGTTGGCATGTATGTAAAGGACTTGTTTTGTTCCCTTGCTTCCAATCCTGAGTCGGCTTTCATGCCGAATACGTTACACTTTTTCGAGCCTTTCGTAGCTCTTCTTGCTTTCTTACCATTACAATGCCATTTCTGAGAACTCACGGGACAGAAATGTCCTTTCCGGATGATTCTTTTTTCAGGATTCATGACTACATGTCTGGTATTTTATATTATTTCTTCATAATTTAACGGTTTTGTTACACTTTTATTCAATTAG] consensusID : consensus_275#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 463 fasta sequence [CCGCCCACGCGTCCGGCCATAAAACCACAAGGATACGGACTGACGCCGGTTGGGTCGATGCAGAGGCTCGGAAGGTTGGCGGAAAAGTGGCCCCAAAATCATTCCCTACTTTTCCATGGTAGGGACGGCGACAATGGGTTTGCCCGCGCGGTGAGGCTGCCAATATTTCTTTGCACAAACATCTTCATCTTTTCGGGGCGGTGCAAGTTTATGTGTTTATTTGTGTGGCTGTCAGTTGTGCGTGTGCGTCTGTGCGTCTGTATGAATAGGATCGTTTCTTCTCGAAATGAGTAGACCTCATTATCAAGCAAAAGAATTCCATCCATGGCAGTGGCGTACTTCTTTTTTTTCTTTTCTTTATTCGCATCTCGCATTTGGTACGGTTTCTTTAATGTCTTGTGGGGTCTTCATATAAATAAGTGCGATGGTGTTTTTGGTTTTGTTTTTCTTGCTTTCGATCCTC] [+] EMBL BM626639 [CCGCCCACGCGTCCGGCCATAAAACCACAAGGATACGGACTGACGCCGGTTGGGTCGATGCAGAGGCTCGGAAGGTTGGCGGAAAAGTGGCCCCAAAATCATTCCCTACTTTTCCATGGTAGGGACGGCGACAATGGGTTTGCCCGCGCGGTGAGGCTGCCAATATTTCTTTGCACAAACATCTTCATCTTTTCGGGGCGGTGCAAGTTTATGTGTTTATTTGTGTGGCTGTCAGTTGTGCGTGTGCGTCTGTGCGTCTGTATGAATAGGATCGTTTCTTCTCGAAATGAGTAGACCTCATTATCAAGCAAAAGAATTCCATCCATGGCAGTGGCGTACTTCTTTTTTTTCTTTTCTTTATTCGCATCTCGCATTTGGTACGGTTTCTTTAATGTCTTGTGGGGTCTTCATATAAATAAGTGCGATGGTGTTTTTGGTTTTGTTTTTCTTGCTTTCGATCCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_275#0 CCGCGGACGCGTGGGCGGACGCGTGGGTTCTTCTCGAAATGAGTAGACCTCATTATCAAG 60 consensus_275#1 ------------------------------------------------------------ consensus_275#0 CAAAAGAATTCCATCCATGGCAGTGGCGTACTTCTTTTTTTTTCTTTTCTTTTCTGTTCT 120 consensus_275#1 --------------------------------CCGCCCACGCGTCCGGCCATAAAACCAC 28 * * * consensus_275#0 CCTTATTCGTATCTCGCATTTGGTACGGTTTCTTTAATGTCTTGTGGGGTCTTCATATAA 180 consensus_275#1 AAGGATACGGA-CTGACGCC-GGTTGGGTCGATGCAGAGGCTCGGAAGGTTGGCGGAAAA 86 ** ** * ** * *** *** * * * ** * *** * * ** consensus_275#0 ATAAGTGCGATGGTGTTTTTGGTTTTGTTTTTTTTTTGCTTTCGATCCTCGTTATTTTCT 240 consensus_275#1 GTGGCCCCAAAATCATTCCCTACTTTTCCATGGTAGGGACGGCGACAATGGGT-TTGCCC 145 * * * ** *** * * * *** * * * ** * consensus_275#0 CCTTTACTTAGCAAACGATGGAACTTTAGCAATGAACGCGAGACTTCATTCATATTTATA 300 consensus_275#1 GCGCGGTGAGGCTGCCAATATTTCTTTGC--ACAAACAT----CTTCATCTTTTCGGGGC 199 * ** * ** **** * *** ****** * consensus_275#0 TGTGTACGCTTATTTGAACGTCTATGCGAGCGAGGAGTGTGAGTTGGCATGTATGTAAAG 360 consensus_275#1 GGTGCAAGTTTATGTGTTTATTTGTGTGGCTGTCAGTTGTGCGTGTGCGTCTGTGCGTCT 259 *** * * **** ** * * ** * * **** ** ** * * ** consensus_275#0 GACTTGTTTTGTTCCCTTGCTTCCAATCCTGAGTCGGCTTTCATGCCGAATACGTTACAC 420 consensus_275#1 G-TATGAATAGGATCGTTTCTTCTCGAAATGAGTAGACCTCATTATCAAGCAAAAGAATT 318 * ** * * * ** **** ***** * * * * * * * * consensus_275#0 TTTTTCGAGCCTTTCGTAGCTCTTCTTGCTTTCTTACCATTACAATGCCATTTCTGAGAA 480 consensus_275#1 CCATCCATGGCAGTGGCGTACTTCTTTTTTTTCTTTTCTTTAT--TCGCATCTCGCATTT 376 * * * * * * * ** ****** * *** * *** ** * consensus_275#0 CTCACGGGA-CAGAAATGTCCTTTCCGGATGATTCTTTTTTCAGGATTCATGACTACATG 539 consensus_275#1 GGTACGGTTTCTTTAATGTCTT----GTGGGGTCTTCATATAAATAAGTGCGATGGTGTT 432 **** * ****** * * * * * * * * * ** * consensus_275#0 TCTGGTATTTTATATTATTTCTTCATAATTTAACGGTTTTGTTACACTTTTATTCAATTA 599 consensus_275#1 TTTGGTTTTGTTTTTCTTGCTTTCGATCCTC----------------------------- 463 * **** ** * * * * *** * consensus_275#0 G 600 consensus_275#1 - |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||