cluster # 2764

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Anopheles gambiae
cluster # 2764 cluster # 2764 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2764#0 length = 677 sequences # 1

consensus_2764#1 length = 438 sequences # 1

consensusID : consensus_2764#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 677
fasta sequence

                              [CCGTGCTTTTTTTTTAATCCAACTTTTTATTTCTTTTTTTTAGAAAATCAATCATTTGTGGAATATTTAATCACAAATAAAAGAAATATTATCCTCTACTCCAACGAGAGCATGTAAAACGTCTCCCCTTTTTGGAATATTGTGGAAGTACTATTGTAAGCAGTTGATTCCGCTTGATAATGCTTTTTTTCGTCCCCGACTGTAGTTGGCTTCACCGAATTCGGAACGAACCAATGAACCGCGTATAGTAGGCGGCGACAAGATTGATCGAATTGTAAGAAAAAGTATTGCGTTCAATCACAGTAGACGACGGTTTGCATTCGTTTCATTCACACAATTGCTCTCCTCTCCCCCTCTCTCTCTGTCACACAAACACACACACAGAATCTTTCTCTCTTTCAGCTCAGAAACCGTCCAGGGAATGAGAATGTGAAGGTGTAAGGAAATTGGACATGAAGAAATAATGGATTCCACAATTAAGAATAGGCAAACTCGATATAATTTTGTTTCTCGTAAATCCAAAACACCTAGCTCTAGCAAACCTATACAACACAATGTCAGAAGCTGTAGAATTAATGTTTGCAGTAGCTTCTTCTGTTTATAGTAAAGTGTTGATTATTTAAAAAAAACGGAAAAAGTGCAGCCAGGTGAACAAGATGAGTGACGTAAAAGCTAAG]

[+] EMBL BM587897             [CCGTGCTTTTTTTTTAATCCAACTTTTTATTTCTTTTTTTTAGAAAATCAATCATTTGTGGAATATTTAATCACAAATAAAAGAAATATTATCCTCTACTCCAACGAGAGCATGTAAAACGTCTCCCCTTTTTGGAATATTGTGGAAGTACTATTGTAAGCAGTTGATTCCGCTTGATAATGCTTTTTTTCGTCCCCGACTGTAGTTGGCTTCACCGAATTCGGAACGAACCAATGAACCGCGTATAGTAGGCGGCGACAAGATTGATCGAATTGTAAGAAAAAGTATTGCGTTCAATCACAGTAGACGACGGTTTGCATTCGTTTCATTCACACAATTGCTCTCCTCTCCCCCTCTCTCTCTGTCACACAAACACACACACAGAATCTTTCTCTCTTTCAGCTCAGAAACCGTCCAGGGAATGAGAATGTGAAGGTGTAAGGAAATTGGACATGAAGAAATAATGGATTCCACAATTAAGAATAGGCAAACTCGATATAATTTTGTTTCTCGTAAATCCAAAACACCTAGCTCTAGCAAACCTATACAACACAATGTCAGAAGCTGTAGAATTAATGTTTGCAGTAGCTTCTTCTGTTTATAGTAAAGTGTTGATTATTTAAAAAAAACGGAAAAAGTGCAGCCAGGTGAACAAGATGAGTGACGTAAAAGCTAAG]




>consensus_2764#0
CCGTGCTTTTTTTTTAATCCAACTTTTTATTTCTTTTTTTTAGAAAATCAATCATTTGTG
GAATATTTAATCACAAATAAAAGAAATATTATCCTCTACTCCAACGAGAGCATGTAAAAC
GTCTCCCCTTTTTGGAATATTGTGGAAGTACTATTGTAAGCAGTTGATTCCGCTTGATAA
TGCTTTTTTTCGTCCCCGACTGTAGTTGGCTTCACCGAATTCGGAACGAACCAATGAACC
GCGTATAGTAGGCGGCGACAAGATTGATCGAATTGTAAGAAAAAGTATTGCGTTCAATCA
CAGTAGACGACGGTTTGCATTCGTTTCATTCACACAATTGCTCTCCTCTCCCCCTCTCTC
TCTGTCACACAAACACACACACAGAATCTTTCTCTCTTTCAGCTCAGAAACCGTCCAGGG
AATGAGAATGTGAAGGTGTAAGGAAATTGGACATGAAGAAATAATGGATTCCACAATTAA
GAATAGGCAAACTCGATATAATTTTGTTTCTCGTAAATCCAAAACACCTAGCTCTAGCAA
ACCTATACAACACAATGTCAGAAGCTGTAGAATTAATGTTTGCAGTAGCTTCTTCTGTTT
ATAGTAAAGTGTTGATTATTTAAAAAAAACGGAAAAAGTGCAGCCAGGTGAACAAGATGA
GTGACGTAAAAGCTAAG

consensusID : consensus_2764#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 438
fasta sequence

                              [ATTGTAAGCAGTTGATTCCGCTTGATAATGCTTTTTTTCGTCCCCGACTGTAGTTGGCTTCACCGAAATTGGTACGAACCAATGAACCGCGTATAGCAGGCGGCGACAAGATTGATCGAATAGTAAGAAAAAGTATTGCATTCAATCACAGTAGACGACGGTTTGCATTCGTTTCATTCACACAATTGCTCTCCTCTCCCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCACACAAACACACACAGAATCTTTCTCTCTTTCAGCTCAGAAACCGTCCAGGGAATGAGAATGTGAAGGTGTAAGGAAATTGGAAATGAATAAATAATGAATTCCACAATCAAGAATAGGCAAACTCGATAGCATTTCGTTTCTCCTAAATCCAAAACACCTAGCTCGAGCAAACCTACACAACACAATGTCAGAAG]

[+] EMBL BX622604             [ATTGTAAGCAGTTGATTCCGCTTGATAATGCTTTTTTTCGTCCCCGACTGTAGTTGGCTTCACCGAAATTGGTACGAACCAATGAACCGCGTATAGCAGGCGGCGACAAGATTGATCGAATAGTAAGAAAAAGTATTGCATTCAATCACAGTAGACGACGGTTTGCATTCGTTTCATTCACACAATTGCTCTCCTCTCCCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCACACAAACACACACAGAATCTTTCTCTCTTTCAGCTCAGAAACCGTCCAGGGAATGAGAATGTGAAGGTGTAAGGAAATTGGAAATGAATAAATAATGAATTCCACAATCAAGAATAGGCAAACTCGATAGCATTTCGTTTCTCCTAAATCCAAAACACCTAGCTCGAGCAAACCTACACAACACAATGTCAGAAG]




>consensus_2764#1
ATTGTAAGCAGTTGATTCCGCTTGATAATGCTTTTTTTCGTCCCCGACTGTAGTTGGCTT
CACCGAAATTGGTACGAACCAATGAACCGCGTATAGCAGGCGGCGACAAGATTGATCGAA
TAGTAAGAAAAAGTATTGCATTCAATCACAGTAGACGACGGTTTGCATTCGTTTCATTCA
CACAATTGCTCTCCTCTCCCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTG
TCACACAAACACACACAGAATCTTTCTCTCTTTCAGCTCAGAAACCGTCCAGGGAATGAG
AATGTGAAGGTGTAAGGAAATTGGAAATGAATAAATAATGAATTCCACAATCAAGAATAG
GCAAACTCGATAGCATTTCGTTTCTCCTAAATCCAAAACACCTAGCTCGAGCAAACCTAC
ACAACACAATGTCAGAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2764#0      CCGTGCTTTTTTTTTAATCCAACTTTTTATTTCTTTTTTTTAGAAAATCAATCATTTGTG 60
consensus_2764#1      ------------------------------------------------------------
                                                                                  

consensus_2764#0      GAATATTTAATCACAAATAAAAGAAATATTATCCTCTACTCCAACGAGAGCATGTAAAAC 120
consensus_2764#1      ------------------------------------------------------------
                                                                                  

consensus_2764#0      GTCTCCCCTTTTTGGAATATTGTGGAAGTACTATTGTAAGCAGTTGATTCCGCTTGATAA 180
consensus_2764#1      --------------------------------ATTGTAAGCAGTTGATTCCGCTTGATAA 28
                                                      ****************************

consensus_2764#0      TGCTTTTTTTCGTCCCCGACTGTAGTTGGCTTCACCGAATTCGGAACGAACCAATGAACC 240
consensus_2764#1      TGCTTTTTTTCGTCCCCGACTGTAGTTGGCTTCACCGAAATTGGTACGAACCAATGAACC 88
                      *************************************** * ** ***************

consensus_2764#0      GCGTATAGTAGGCGGCGACAAGATTGATCGAATTGTAAGAAAAAGTATTGCGTTCAATCA 300
consensus_2764#1      GCGTATAGCAGGCGGCGACAAGATTGATCGAATAGTAAGAAAAAGTATTGCATTCAATCA 148
                      ******** ************************ ***************** ********

consensus_2764#0      CAGTAGACGACGGTTTGCATTCGTTTCATTCACACAATTGCTCTCCTCTCCCCCTCTCTC 360
consensus_2764#1      CAGTAGACGACGGTTTGCATTCGTTTCATTCACACAATTGCTCTCCTCTCCCCCTCTCTC 208
                      ************************************************************

consensus_2764#0      TCTGTCAC--------------------------ACAAACACACACACAGAATCTTTCTC 394
consensus_2764#1      TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCACACAAACACACACAGAATCTTTCTC 268
                      *** ** *                          *** * ********************

consensus_2764#0      TCTTTCAGCTCAGAAACCGTCCAGGGAATGAGAATGTGAAGGTGTAAGGAAATTGGACAT 454
consensus_2764#1      TCTTTCAGCTCAGAAACCGTCCAGGGAATGAGAATGTGAAGGTGTAAGGAAATTGGAAAT 328
                      ********************************************************* **

consensus_2764#0      GAAGAAATAATGGATTCCACAATTAAGAATAGGCAAACTCGATATAATTTTGTTTCTCGT 514
consensus_2764#1      GAATAAATAATGAATTCCACAATCAAGAATAGGCAAACTCGATAGCATTTCGTTTCTCCT 388
                      *** ******** ********** ********************  **** ******* *

consensus_2764#0      AAATCCAAAACACCTAGCTCTAGCAAACCTATACAACACAATGTCAGAAGCTGTAGAATT 574
consensus_2764#1      AAATCCAAAACACCTAGCTCGAGCAAACCTACACAACACAATGTCAGAAG---------- 438
                      ******************** ********** ******************          

consensus_2764#0      AATGTTTGCAGTAGCTTCTTCTGTTTATAGTAAAGTGTTGATTATTTAAAAAAAACGGAA 634
consensus_2764#1      ------------------------------------------------------------
                                                                                  

consensus_2764#0      AAAGTGCAGCCAGGTGAACAAGATGAGTGACGTAAAAGCTAAG 677
consensus_2764#1      -------------------------------------------