cluster # 2796

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Anopheles gambiae
cluster # 2796 cluster # 2796 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2796#0 length = 642 sequences # 1

consensus_2796#1 length = 116 sequences # 1

consensusID : consensus_2796#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 642
fasta sequence

                              [CGAAGCATCACCGATTCAGCAGAGGATGATAAGCGTGGCCTTTGGACAGGGAGGACAGGGTGGCAACTCAACCACGCAGCCGGCATACTAGCGACTCGTTTTATTGCTGTGGACTTAGATTTTGAAAACCGTTCGAAACAACGAATCTATAGTGTCAATTGAATGTCTCTCGATTGGGAGAAAAGTTTTGCAGCATGTCGCAAAGGAAAATGTCGAAGGAAATTGTGTACATCACAACTGCTGGTTCAATATTAGACTGCATTGGTTTCGCTATCTTTCGAACGTCAACGTCAGGAAGCTATCTGATGATCTATTGCTACGTTATGTGTAATTTAATTTAATTTTCTCCTTCTACTGGTAATTTCCTCCGTAGATACAATTTATTTTCTAACTAAGTTCTAGAAGGGAAGACGCGTTACAATCATTATCTTAGAGGAAGCAAGCTAAAACTGTCGTCTACCAATCATTGAACGCAAAGTAGATTTGAGTATGGGTCCGAGGGCAGCTAACTAAAACGCATACAAGAGTGCAAGACAATTTCCGATATTAAAATATCAAATGCACAATAATCAACCAACATCCGTTGCGTTGACTTTCTCTCATAGTGAACCCATGAACCCTTACCTCCTACCCCTTTCACCC]

[+] EMBL BX608969             [CGAAGCATCACCGATTCAGCAGAGGATGATAAGCGTGGCCTTTGGACAGGGAGGACAGGGTGGCAACTCAACCACGCAGCCGGCATACTAGCGACTCGTTTTATTGCTGTGGACTTAGATTTTGAAAACCGTTCGAAACAACGAATCTATAGTGTCAATTGAATGTCTCTCGATTGGGAGAAAAGTTTTGCAGCATGTCGCAAAGGAAAATGTCGAAGGAAATTGTGTACATCACAACTGCTGGTTCAATATTAGACTGCATTGGTTTCGCTATCTTTCGAACGTCAACGTCAGGAAGCTATCTGATGATCTATTGCTACGTTATGTGTAATTTAATTTAATTTTCTCCTTCTACTGGTAATTTCCTCCGTAGATACAATTTATTTTCTAACTAAGTTCTAGAAGGGAAGACGCGTTACAATCATTATCTTAGAGGAAGCAAGCTAAAACTGTCGTCTACCAATCATTGAACGCAAAGTAGATTTGAGTATGGGTCCGAGGGCAGCTAACTAAAACGCATACAAGAGTGCAAGACAATTTCCGATATTAAAATATCAAATGCACAATAATCAACCAACATCCGTTGCGTTGACTTTCTCTCATAGTGAACCCATGAACCCTTACCTCCTACCCCTTTCACCC]




>consensus_2796#0
CGAAGCATCACCGATTCAGCAGAGGATGATAAGCGTGGCCTTTGGACAGGGAGGACAGGG
TGGCAACTCAACCACGCAGCCGGCATACTAGCGACTCGTTTTATTGCTGTGGACTTAGAT
TTTGAAAACCGTTCGAAACAACGAATCTATAGTGTCAATTGAATGTCTCTCGATTGGGAG
AAAAGTTTTGCAGCATGTCGCAAAGGAAAATGTCGAAGGAAATTGTGTACATCACAACTG
CTGGTTCAATATTAGACTGCATTGGTTTCGCTATCTTTCGAACGTCAACGTCAGGAAGCT
ATCTGATGATCTATTGCTACGTTATGTGTAATTTAATTTAATTTTCTCCTTCTACTGGTA
ATTTCCTCCGTAGATACAATTTATTTTCTAACTAAGTTCTAGAAGGGAAGACGCGTTACA
ATCATTATCTTAGAGGAAGCAAGCTAAAACTGTCGTCTACCAATCATTGAACGCAAAGTA
GATTTGAGTATGGGTCCGAGGGCAGCTAACTAAAACGCATACAAGAGTGCAAGACAATTT
CCGATATTAAAATATCAAATGCACAATAATCAACCAACATCCGTTGCGTTGACTTTCTCT
CATAGTGAACCCATGAACCCTTACCTCCTACCCCTTTCACCC

consensusID : consensus_2796#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 116
fasta sequence

                              [TAAAATATCAAAGGCACAATAATCAACCAACATCCGTTGCGTCGACTCACTCTCATAGTGAACCCATGAACCCTGACCTCCTACCCCCGACACCCAAGGTCTAAAGTCAAAGCGTA]

[+] EMBL BX614748             [TAAAATATCAAAGGCACAATAATCAACCAACATCCGTTGCGTCGACTCACTCTCATAGTGAACCCATGAACCCTGACCTCCTACCCCCGACACCCAAGGTCTAAAGTCAAAGCGTA]




>consensus_2796#1
TAAAATATCAAAGGCACAATAATCAACCAACATCCGTTGCGTCGACTCACTCTCATAGTG
AACCCATGAACCCTGACCTCCTACCCCCGACACCCAAGGTCTAAAGTCAAAGCGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2796#0      CGAAGCATCACCGATTCAGCAGAGGATGATAAGCGTGGCCTTTGGACAGGGAGGACAGGG 60
consensus_2796#1      ------------------------------------------------------------
                                                                                  

consensus_2796#0      TGGCAACTCAACCACGCAGCCGGCATACTAGCGACTCGTTTTATTGCTGTGGACTTAGAT 120
consensus_2796#1      ------------------------------------------------------------
                                                                                  

consensus_2796#0      TTTGAAAACCGTTCGAAACAACGAATCTATAGTGTCAATTGAATGTCTCTCGATTGGGAG 180
consensus_2796#1      ------------------------------------------------------------
                                                                                  

consensus_2796#0      AAAAGTTTTGCAGCATGTCGCAAAGGAAAATGTCGAAGGAAATTGTGTACATCACAACTG 240
consensus_2796#1      ------------------------------------------------------------
                                                                                  

consensus_2796#0      CTGGTTCAATATTAGACTGCATTGGTTTCGCTATCTTTCGAACGTCAACGTCAGGAAGCT 300
consensus_2796#1      ------------------------------------------------------------
                                                                                  

consensus_2796#0      ATCTGATGATCTATTGCTACGTTATGTGTAATTTAATTTAATTTTCTCCTTCTACTGGTA 360
consensus_2796#1      ------------------------------------------------------------
                                                                                  

consensus_2796#0      ATTTCCTCCGTAGATACAATTTATTTTCTAACTAAGTTCTAGAAGGGAAGACGCGTTACA 420
consensus_2796#1      ------------------------------------------------------------
                                                                                  

consensus_2796#0      ATCATTATCTTAGAGGAAGCAAGCTAAAACTGTCGTCTACCAATCATTGAACGCAAAGTA 480
consensus_2796#1      ------------------------------------------------------------
                                                                                  

consensus_2796#0      GATTTGAGTATGGGTCCGAGGGCAGCTAACTAAAACGCATACAAGAGTGCAAGACAATTT 540
consensus_2796#1      ------------------------------------------------------------
                                                                                  

consensus_2796#0      CCGATATTAAAATATCAAATGCACAATAATCAACCAACATCCGTTGCGTTGACTTTCTCT 600
consensus_2796#1      -------TAAAATATCAAAGGCACAATAATCAACCAACATCCGTTGCGTCGACTCACTCT 53
                             ************ ***************************** ****  ****

consensus_2796#0      CATAGTGAACCCATGAACCCTTACCTCCTACCCCTTTCACCC------------------ 642
consensus_2796#1      CATAGTGAACCCATGAACCCTGACCTCCTACCCCCGACACCCAAGGTCTAAAGTCAAAGC 113
                      ********************* ************   *****                  

consensus_2796#0      ---
consensus_2796#1      GTA 116