cluster # 2811

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Anopheles gambiae
cluster # 2811 cluster # 2811 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2811#0 length = 567 sequences # 1

consensus_2811#1 length = 249 sequences # 1

consensusID : consensus_2811#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 567
fasta sequence

                              [CCGCTTCGCGATGTTCTTCTCCGCGTTCTATCACGCGTGCGATTCGGGCGAGGAAGAGTTTAGCTTCTGTCTGGTGAAGATCGGCGTCCTGCAGTTTTGCGACTTCTACTGCGGGCTGCTCGCGATCTGGGTGACGCTGATCGCGATGTCCAACATTCGGCACCAGCTGGTGTCGCTGCTGCACATGCTCGGCGCGATCCTGCTCGCGTTCGGCACCGAGCTGAACAAGCAGTCGCTGTGGGTGTTTCTGGCGCCCGCCCTCACCGGCATCTGTCTCATCTCGGTCAGCTGGGGGCTGCGGTGCCGCAAGACGAAGCGCTGCTTCCCGGCCCGCAGCTACCTGGCCCTCTACCTGCCGATCGGCAGCGTGCTGGTGATGGTGGGCCTGGTCTGCTTCGCCTTTCTGCAGACCAAGCAGAACTATCACATCGTCCACTCGATCTGGCACATGGTGATGGCGCTCAGCATTCTCTGCCTGCTGCCGGACCGCAAAACGTTCCACCCGAAGTGCTAGCATACGGTGCGCATCTACCTGCTCAACTCGGGCTCACCCTCCACCTCCACCCA]

[+] EMBL BM655993             [CCGCTTCGCGATGTTCTTCTCCGCGTTCTATCACGCGTGCGATTCGGGCGAGGAAGAGTTTAGCTTCTGTCTGGTGAAGATCGGCGTCCTGCAGTTTTGCGACTTCTACTGCGGGCTGCTCGCGATCTGGGTGACGCTGATCGCGATGTCCAACATTCGGCACCAGCTGGTGTCGCTGCTGCACATGCTCGGCGCGATCCTGCTCGCGTTCGGCACCGAGCTGAACAAGCAGTCGCTGTGGGTGTTTCTGGCGCCCGCCCTCACCGGCATCTGTCTCATCTCGGTCAGCTGGGGGCTGCGGTGCCGCAAGACGAAGCGCTGCTTCCCGGCCCGCAGCTACCTGGCCCTCTACCTGCCGATCGGCAGCGTGCTGGTGATGGTGGGCCTGGTCTGCTTCGCCTTTCTGCAGACCAAGCAGAACTATCACATCGTCCACTCGATCTGGCACATGGTGATGGCGCTCAGCATTCTCTGCCTGCTGCCGGACCGCAAAACGTTCCACCCGAAGTGCTAGCATACGGTGCGCATCTACCTGCTCAACTCGGGCTCACCCTCCACCTCCACCCA]




>consensus_2811#0
CCGCTTCGCGATGTTCTTCTCCGCGTTCTATCACGCGTGCGATTCGGGCGAGGAAGAGTT
TAGCTTCTGTCTGGTGAAGATCGGCGTCCTGCAGTTTTGCGACTTCTACTGCGGGCTGCT
CGCGATCTGGGTGACGCTGATCGCGATGTCCAACATTCGGCACCAGCTGGTGTCGCTGCT
GCACATGCTCGGCGCGATCCTGCTCGCGTTCGGCACCGAGCTGAACAAGCAGTCGCTGTG
GGTGTTTCTGGCGCCCGCCCTCACCGGCATCTGTCTCATCTCGGTCAGCTGGGGGCTGCG
GTGCCGCAAGACGAAGCGCTGCTTCCCGGCCCGCAGCTACCTGGCCCTCTACCTGCCGAT
CGGCAGCGTGCTGGTGATGGTGGGCCTGGTCTGCTTCGCCTTTCTGCAGACCAAGCAGAA
CTATCACATCGTCCACTCGATCTGGCACATGGTGATGGCGCTCAGCATTCTCTGCCTGCT
GCCGGACCGCAAAACGTTCCACCCGAAGTGCTAGCATACGGTGCGCATCTACCTGCTCAA
CTCGGGCTCACCCTCCACCTCCACCCA

consensusID : consensus_2811#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 249
fasta sequence

                              [CCGCGGACGCGTGGGCGCAAAACGTTCCACCCGAAGTGCTAGCATACGGTGCGCATCTACCTGCTCAACTCGGGCTCACCCTCCACCTCCACCCAGTCGTCGTCCGGCTCGATGTCGACGTCCTCGACGACGTCCTCCTGCTCGACCGTGGCGGCGGTGGCCGCCAGCACCACTACCAGCTCCGTCGCCACCACCGCCACCTCCACCACGGCTGTGATATCCCAGGCGTCTCCGGTGGCAGCGCCCTGC]

[+] EMBL BM657346             [CCGCGGACGCGTGGGCGCAAAACGTTCCACCCGAAGTGCTAGCATACGGTGCGCATCTACCTGCTCAACTCGGGCTCACCCTCCACCTCCACCCAGTCGTCGTCCGGCTCGATGTCGACGTCCTCGACGACGTCCTCCTGCTCGACCGTGGCGGCGGTGGCCGCCAGCACCACTACCAGCTCCGTCGCCACCACCGCCACCTCCACCACGGCTGTGATATCCCAGGCGTCTCCGGTGGCAGCGCCCTGC]




>consensus_2811#1
CCGCGGACGCGTGGGCGCAAAACGTTCCACCCGAAGTGCTAGCATACGGTGCGCATCTAC
CTGCTCAACTCGGGCTCACCCTCCACCTCCACCCAGTCGTCGTCCGGCTCGATGTCGACG
TCCTCGACGACGTCCTCCTGCTCGACCGTGGCGGCGGTGGCCGCCAGCACCACTACCAGC
TCCGTCGCCACCACCGCCACCTCCACCACGGCTGTGATATCCCAGGCGTCTCCGGTGGCA
GCGCCCTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2811#0      CCGCTTCGCGATGTTCTTCTCCGCGTTCTATCACGCGTGCGATTCGGGCGAGGAAGAGTT 60
consensus_2811#1      ------------------------------------------------------------
                                                                                  

consensus_2811#0      TAGCTTCTGTCTGGTGAAGATCGGCGTCCTGCAGTTTTGCGACTTCTACTGCGGGCTGCT 120
consensus_2811#1      -----------------------------------------------------------C 1
                                                                                  

consensus_2811#0      CGCGATCTGGGTGACGCTGATCGCGATGTCCAACATTCGGCACCAGCTGGTGTCGCTGCT 180
consensus_2811#1      CGCGGACGCGTGGGCGCAAAACGTTCCACCCGA-----AGTGCTAGCATACGGTGCGCAT 56
                      ****  *  *  * ***  * **      ** *      *  * ***    *  **   *

consensus_2811#0      GCACATGCTCGGCGCGATCCTGCTCGCGTTCGGCACCGAGCTGAACAAGCAGTCGCTGTG 240
consensus_2811#1      CTACCTGCTCAACTCGGGCTCACCCTCCACCTCCACC------------CAGTCGTCGTC 104
                        ** *****  * **  *   * * *   *  ****            ******  ** 

consensus_2811#0      GGTGTTTCTGGCGCCCGCCCTCACCGGCATCTGTCTCATCTCGGTCAGCTGGGGGCTGCG 300
consensus_2811#1      CGGCTCGATGTCGAC-GTCCTCGACGACGTCCTCCT--GCTCGACCG--TGGCGGCGGTG 159
                       *  *   ** ** * * ****  ** * **   **   ****  *   *** *** * *

consensus_2811#0      GTGCCGCAAGACGAAGCGCTGCTTCCCGGCCCGCAGCTACCTGGCCCTCTACCTGCCGAT 360
consensus_2811#1      --GCCGCCAG------CACCACTACCAGCTCCGTCGCCACCA---CCGCCACCTCCACCA 208
                        ***** **      * *  ** ** *  ***  ** ***    ** * **** *    

consensus_2811#0      CGGCAGCGTGCTGGTGATGGTGGGCCTGGTCTGCTTCGCCTTTCTGCAGACCAAGCAGAA 420
consensus_2811#1      CGGC--TGTGATATCCCAGGCGTCTCCGGTG-GCAGCGCCCTGC---------------- 249
                      ****   *** *      ** *   * ***  **  **** * *                

consensus_2811#0      CTATCACATCGTCCACTCGATCTGGCACATGGTGATGGCGCTCAGCATTCTCTGCCTGCT 480
consensus_2811#1      ------------------------------------------------------------
                                                                                  

consensus_2811#0      GCCGGACCGCAAAACGTTCCACCCGAAGTGCTAGCATACGGTGCGCATCTACCTGCTCAA 540
consensus_2811#1      ------------------------------------------------------------
                                                                                  

consensus_2811#0      CTCGGGCTCACCCTCCACCTCCACCCA 567
consensus_2811#1      ---------------------------