These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2823#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 674 fasta sequence [ATGTACTTCCCCGGAGCGGAGAAGTACGACATCATCACATCACTGGATGGTTTGGAAAGCAACCTCGACCGGTGGATTCTATCACGCCTTGCCGGGTGTATTGAAACTGCAAACCGGGGTTTCGAAAAGTACGAGTTTGCCCTGGCTACAAACGCTTGCTACAACTTCTGGCTTTACGATTTATGCGACGTTTACCTGGAGTGTTTGAAATCCGTTTTCCAAACGAATGATGAATCAGCGAAAGCATCCGCCCGTCGCACGCTGTACACGTGTCTCAATTTGGGTCTGAAATTGCTTTCACCCTTCATGCCCTTTATTACGGAGGAATTGTACCAACGACTGCCCAGGGGCGATTTTGCCACGGTTGCTAGTATTTGTGTTGCATCTTATCCGGAGCAGACCGACAGCCCTTGGAAGGATGAATCGATCGAAAAAGGATTCGAATTCGTGCAGAAAACGGCTCGGGACATACGTTCGGCACGCAGCGACTACAATATTCCTAACAAGACCAAAACCGACGCATACTTCATCTGTAGCGATGAAGGAGTACGCAGCGCACTGGAACGGTTCACTCTCGAGCTGGAAACGATGGCATTCTCGCAAGTGCACTTTGGCACTGTGCCTCCGGCAGGCTGCGCGATTCTGACCATTTCCGGTCAGTGTGTGGTGCACCT] [+] EMBL BX621289 [ATGTACTTCCCCGGAGCGGAGAAGTACGACATCATCACATCACTGGATGGTTTGGAAAGCAACCTCGACCGGTGGATTCTATCACGCCTTGCCGGGTGTATTGAAACTGCAAACCGGGGTTTCGAAAAGTACGAGTTTGCCCTGGCTACAAACGCTTGCTACAACTTCTGGCTTTACGATTTATGCGACGTTTACCTGGAGTGTTTGAAATCCGTTTTCCAAACGAATGATGAATCAGCGAAAGCATCCGCCCGTCGCACGCTGTACACGTGTCTCAATTTGGGTCTGAAATTGCTTTCACCCTTCATGCCCTTTATTACGGAGGAATTGTACCAACGACTGCCCAGGGGCGATTTTGCCACGGTTGCTAGTATTTGTGTTGCATCTTATCCGGAGCAGACCGACAGCCCTTGGAAGGATGAATCGATCGAAAAAGGATTCGAATTCGTGCAGAAAACGGCTCGGGACATACGTTCGGCACGCAGCGACTACAATATTCCTAACAAGACCAAAACCGACGCATACTTCATCTGTAGCGATGAAGGAGTACGCAGCGCACTGGAACGGTTCACTCTCGAGCTGGAAACGATGGCATTCTCGCAAGTGCACTTTGGCACTGTGCCTCCGGCAGGCTGCGCGATTCTGACCATTTCCGGTCAGTGTGTGGTGCACCT] consensusID : consensus_2823#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 503 fasta sequence [GAATCGCCCCGAGGNNTTTATGCGACGTTTACCTGGAGTGTTTGAAATCCGTTTTCCAAACGAATGATGAATCAGCGAAAGCATCCGCCCGTCGCACGCTGTACACGTGTCTCAATTTGGGTCTGAAATTGCTTTCACCCTTCATGCCCTTTATTACGGAGGAATTGTACCAACGACTGCCCAGGGGCGATTTTGCCACGGTTGCTAGTATTTGTGTTGCATCTTATCCGGAGCAGACCGACAGCCCTTGGAAGGATGAATCGATCGAAAAAGGATTCGAATTCGTGCAGAAAACGGCTCGGGACATACGTTCGGCACGCAGCGACTACAATATTCCTAACAAGACCAAAACCGACGCATACTTCATCTGTAGCGATGAAGGAGTACGCAGCGCACTGGAACGGTTCACTCTCGAGCTGGAAACGATGGCATTCTCGCAAGTGCACTTTGGCACTGTGCCTCCGGCAGGCTGCGCGATTCTGACCATTTCCGGTCAGTGTGTG] [+] EMBL AL932919 [GAATCGCCCCGAGGNNTTTATGCGACGTTTACCTGGAGTGTTTGAAATCCGTTTTCCAAACGAATGATGAATCAGCGAAAGCATCCGCCCGTCGCACGCTGTACACGTGTCTCAATTTGGGTCTGAAATTGCTTTCACCCTTCATGCCCTTTATTACGGAGGAATTGTACCAACGACTGCCCAGGGGCGATTTTGCCACGGTTGCTAGTATTTGTGTTGCATCTTATCCGGAGCAGACCGACAGCCCTTGGAAGGATGAATCGATCGAAAAAGGATTCGAATTCGTGCAGAAAACGGCTCGGGACATACGTTCGGCACGCAGCGACTACAATATTCCTAACAAGACCAAAACCGACGCATACTTCATCTGTAGCGATGAAGGAGTACGCAGCGCACTGGAACGGTTCACTCTCGAGCTGGAAACGATGGCATTCTCGCAAGTGCACTTTGGCACTGTGCCTCCGGCAGGCTGCGCGATTCTGACCATTTCCGGTCAGTGTGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2823#0 ATGTACTTCCCCGGAGCGGAGAAGTACGACATCATCACATCACTGGATGGTTTGGAAAGC 60 consensus_2823#1 ------------------------------------------------------------ consensus_2823#0 AACCTCGACCGGTGGATTCTATCACGCCTTGCCGGGTGTATTGAAACTGCAAACCGGGGT 120 consensus_2823#1 ------------------------------------------------------------ consensus_2823#0 TTCGAAAAGTACGAGTTTGCCCTGGCTACAAACGCTTGCTACAACTTCTGGCTTTACGAT 180 consensus_2823#1 -------------------------------------------GAATCGCCCCGAGGNNT 17 ** * * consensus_2823#0 TTATGCGACGTTTACCTGGAGTGTTTGAAATCCGTTTTCCAAACGAATGATGAATCAGCG 240 consensus_2823#1 TTATGCGACGTTTACCTGGAGTGTTTGAAATCCGTTTTCCAAACGAATGATGAATCAGCG 77 ************************************************************ consensus_2823#0 AAAGCATCCGCCCGTCGCACGCTGTACACGTGTCTCAATTTGGGTCTGAAATTGCTTTCA 300 consensus_2823#1 AAAGCATCCGCCCGTCGCACGCTGTACACGTGTCTCAATTTGGGTCTGAAATTGCTTTCA 137 ************************************************************ consensus_2823#0 CCCTTCATGCCCTTTATTACGGAGGAATTGTACCAACGACTGCCCAGGGGCGATTTTGCC 360 consensus_2823#1 CCCTTCATGCCCTTTATTACGGAGGAATTGTACCAACGACTGCCCAGGGGCGATTTTGCC 197 ************************************************************ consensus_2823#0 ACGGTTGCTAGTATTTGTGTTGCATCTTATCCGGAGCAGACCGACAGCCCTTGGAAGGAT 420 consensus_2823#1 ACGGTTGCTAGTATTTGTGTTGCATCTTATCCGGAGCAGACCGACAGCCCTTGGAAGGAT 257 ************************************************************ consensus_2823#0 GAATCGATCGAAAAAGGATTCGAATTCGTGCAGAAAACGGCTCGGGACATACGTTCGGCA 480 consensus_2823#1 GAATCGATCGAAAAAGGATTCGAATTCGTGCAGAAAACGGCTCGGGACATACGTTCGGCA 317 ************************************************************ consensus_2823#0 CGCAGCGACTACAATATTCCTAACAAGACCAAAACCGACGCATACTTCATCTGTAGCGAT 540 consensus_2823#1 CGCAGCGACTACAATATTCCTAACAAGACCAAAACCGACGCATACTTCATCTGTAGCGAT 377 ************************************************************ consensus_2823#0 GAAGGAGTACGCAGCGCACTGGAACGGTTCACTCTCGAGCTGGAAACGATGGCATTCTCG 600 consensus_2823#1 GAAGGAGTACGCAGCGCACTGGAACGGTTCACTCTCGAGCTGGAAACGATGGCATTCTCG 437 ************************************************************ consensus_2823#0 CAAGTGCACTTTGGCACTGTGCCTCCGGCAGGCTGCGCGATTCTGACCATTTCCGGTCAG 660 consensus_2823#1 CAAGTGCACTTTGGCACTGTGCCTCCGGCAGGCTGCGCGATTCTGACCATTTCCGGTCAG 497 ************************************************************ consensus_2823#0 TGTGTGGTGCACCT 674 consensus_2823#1 TGTGTG-------- 503 ****** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||