Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 2823 cluster # 2823       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2823#0 length = 674 sequences # 1  
consensus_2823#1 length = 503 sequences # 1  

consensusID : consensus_2823#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 674
fasta sequence
                              [ATGTACTTCCCCGGAGCGGAGAAGTACGACATCATCACATCACTGGATGGTTTGGAAAGCAACCTCGACCGGTGGATTCTATCACGCCTTGCCGGGTGTATTGAAACTGCAAACCGGGGTTTCGAAAAGTACGAGTTTGCCCTGGCTACAAACGCTTGCTACAACTTCTGGCTTTACGATTTATGCGACGTTTACCTGGAGTGTTTGAAATCCGTTTTCCAAACGAATGATGAATCAGCGAAAGCATCCGCCCGTCGCACGCTGTACACGTGTCTCAATTTGGGTCTGAAATTGCTTTCACCCTTCATGCCCTTTATTACGGAGGAATTGTACCAACGACTGCCCAGGGGCGATTTTGCCACGGTTGCTAGTATTTGTGTTGCATCTTATCCGGAGCAGACCGACAGCCCTTGGAAGGATGAATCGATCGAAAAAGGATTCGAATTCGTGCAGAAAACGGCTCGGGACATACGTTCGGCACGCAGCGACTACAATATTCCTAACAAGACCAAAACCGACGCATACTTCATCTGTAGCGATGAAGGAGTACGCAGCGCACTGGAACGGTTCACTCTCGAGCTGGAAACGATGGCATTCTCGCAAGTGCACTTTGGCACTGTGCCTCCGGCAGGCTGCGCGATTCTGACCATTTCCGGTCAGTGTGTGGTGCACCT]

[+] EMBL BX621289             [ATGTACTTCCCCGGAGCGGAGAAGTACGACATCATCACATCACTGGATGGTTTGGAAAGCAACCTCGACCGGTGGATTCTATCACGCCTTGCCGGGTGTATTGAAACTGCAAACCGGGGTTTCGAAAAGTACGAGTTTGCCCTGGCTACAAACGCTTGCTACAACTTCTGGCTTTACGATTTATGCGACGTTTACCTGGAGTGTTTGAAATCCGTTTTCCAAACGAATGATGAATCAGCGAAAGCATCCGCCCGTCGCACGCTGTACACGTGTCTCAATTTGGGTCTGAAATTGCTTTCACCCTTCATGCCCTTTATTACGGAGGAATTGTACCAACGACTGCCCAGGGGCGATTTTGCCACGGTTGCTAGTATTTGTGTTGCATCTTATCCGGAGCAGACCGACAGCCCTTGGAAGGATGAATCGATCGAAAAAGGATTCGAATTCGTGCAGAAAACGGCTCGGGACATACGTTCGGCACGCAGCGACTACAATATTCCTAACAAGACCAAAACCGACGCATACTTCATCTGTAGCGATGAAGGAGTACGCAGCGCACTGGAACGGTTCACTCTCGAGCTGGAAACGATGGCATTCTCGCAAGTGCACTTTGGCACTGTGCCTCCGGCAGGCTGCGCGATTCTGACCATTTCCGGTCAGTGTGTGGTGCACCT]


>consensus_2823#0 ATGTACTTCCCCGGAGCGGAGAAGTACGACATCATCACATCACTGGATGGTTTGGAAAGC AACCTCGACCGGTGGATTCTATCACGCCTTGCCGGGTGTATTGAAACTGCAAACCGGGGT TTCGAAAAGTACGAGTTTGCCCTGGCTACAAACGCTTGCTACAACTTCTGGCTTTACGAT TTATGCGACGTTTACCTGGAGTGTTTGAAATCCGTTTTCCAAACGAATGATGAATCAGCG AAAGCATCCGCCCGTCGCACGCTGTACACGTGTCTCAATTTGGGTCTGAAATTGCTTTCA CCCTTCATGCCCTTTATTACGGAGGAATTGTACCAACGACTGCCCAGGGGCGATTTTGCC ACGGTTGCTAGTATTTGTGTTGCATCTTATCCGGAGCAGACCGACAGCCCTTGGAAGGAT GAATCGATCGAAAAAGGATTCGAATTCGTGCAGAAAACGGCTCGGGACATACGTTCGGCA CGCAGCGACTACAATATTCCTAACAAGACCAAAACCGACGCATACTTCATCTGTAGCGAT GAAGGAGTACGCAGCGCACTGGAACGGTTCACTCTCGAGCTGGAAACGATGGCATTCTCG CAAGTGCACTTTGGCACTGTGCCTCCGGCAGGCTGCGCGATTCTGACCATTTCCGGTCAG TGTGTGGTGCACCT



consensusID : consensus_2823#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 503
fasta sequence
                              [GAATCGCCCCGAGGNNTTTATGCGACGTTTACCTGGAGTGTTTGAAATCCGTTTTCCAAACGAATGATGAATCAGCGAAAGCATCCGCCCGTCGCACGCTGTACACGTGTCTCAATTTGGGTCTGAAATTGCTTTCACCCTTCATGCCCTTTATTACGGAGGAATTGTACCAACGACTGCCCAGGGGCGATTTTGCCACGGTTGCTAGTATTTGTGTTGCATCTTATCCGGAGCAGACCGACAGCCCTTGGAAGGATGAATCGATCGAAAAAGGATTCGAATTCGTGCAGAAAACGGCTCGGGACATACGTTCGGCACGCAGCGACTACAATATTCCTAACAAGACCAAAACCGACGCATACTTCATCTGTAGCGATGAAGGAGTACGCAGCGCACTGGAACGGTTCACTCTCGAGCTGGAAACGATGGCATTCTCGCAAGTGCACTTTGGCACTGTGCCTCCGGCAGGCTGCGCGATTCTGACCATTTCCGGTCAGTGTGTG]

[+] EMBL AL932919             [GAATCGCCCCGAGGNNTTTATGCGACGTTTACCTGGAGTGTTTGAAATCCGTTTTCCAAACGAATGATGAATCAGCGAAAGCATCCGCCCGTCGCACGCTGTACACGTGTCTCAATTTGGGTCTGAAATTGCTTTCACCCTTCATGCCCTTTATTACGGAGGAATTGTACCAACGACTGCCCAGGGGCGATTTTGCCACGGTTGCTAGTATTTGTGTTGCATCTTATCCGGAGCAGACCGACAGCCCTTGGAAGGATGAATCGATCGAAAAAGGATTCGAATTCGTGCAGAAAACGGCTCGGGACATACGTTCGGCACGCAGCGACTACAATATTCCTAACAAGACCAAAACCGACGCATACTTCATCTGTAGCGATGAAGGAGTACGCAGCGCACTGGAACGGTTCACTCTCGAGCTGGAAACGATGGCATTCTCGCAAGTGCACTTTGGCACTGTGCCTCCGGCAGGCTGCGCGATTCTGACCATTTCCGGTCAGTGTGTG]


>consensus_2823#1 GAATCGCCCCGAGGNNTTTATGCGACGTTTACCTGGAGTGTTTGAAATCCGTTTTCCAAA CGAATGATGAATCAGCGAAAGCATCCGCCCGTCGCACGCTGTACACGTGTCTCAATTTGG GTCTGAAATTGCTTTCACCCTTCATGCCCTTTATTACGGAGGAATTGTACCAACGACTGC CCAGGGGCGATTTTGCCACGGTTGCTAGTATTTGTGTTGCATCTTATCCGGAGCAGACCG ACAGCCCTTGGAAGGATGAATCGATCGAAAAAGGATTCGAATTCGTGCAGAAAACGGCTC GGGACATACGTTCGGCACGCAGCGACTACAATATTCCTAACAAGACCAAAACCGACGCAT ACTTCATCTGTAGCGATGAAGGAGTACGCAGCGCACTGGAACGGTTCACTCTCGAGCTGG AAACGATGGCATTCTCGCAAGTGCACTTTGGCACTGTGCCTCCGGCAGGCTGCGCGATTC TGACCATTTCCGGTCAGTGTGTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2823#0      ATGTACTTCCCCGGAGCGGAGAAGTACGACATCATCACATCACTGGATGGTTTGGAAAGC 60
consensus_2823#1      ------------------------------------------------------------
                                                                                  

consensus_2823#0      AACCTCGACCGGTGGATTCTATCACGCCTTGCCGGGTGTATTGAAACTGCAAACCGGGGT 120
consensus_2823#1      ------------------------------------------------------------
                                                                                  

consensus_2823#0      TTCGAAAAGTACGAGTTTGCCCTGGCTACAAACGCTTGCTACAACTTCTGGCTTTACGAT 180
consensus_2823#1      -------------------------------------------GAATCGCCCCGAGGNNT 17
                                                                    **   *       *

consensus_2823#0      TTATGCGACGTTTACCTGGAGTGTTTGAAATCCGTTTTCCAAACGAATGATGAATCAGCG 240
consensus_2823#1      TTATGCGACGTTTACCTGGAGTGTTTGAAATCCGTTTTCCAAACGAATGATGAATCAGCG 77
                      ************************************************************

consensus_2823#0      AAAGCATCCGCCCGTCGCACGCTGTACACGTGTCTCAATTTGGGTCTGAAATTGCTTTCA 300
consensus_2823#1      AAAGCATCCGCCCGTCGCACGCTGTACACGTGTCTCAATTTGGGTCTGAAATTGCTTTCA 137
                      ************************************************************

consensus_2823#0      CCCTTCATGCCCTTTATTACGGAGGAATTGTACCAACGACTGCCCAGGGGCGATTTTGCC 360
consensus_2823#1      CCCTTCATGCCCTTTATTACGGAGGAATTGTACCAACGACTGCCCAGGGGCGATTTTGCC 197
                      ************************************************************

consensus_2823#0      ACGGTTGCTAGTATTTGTGTTGCATCTTATCCGGAGCAGACCGACAGCCCTTGGAAGGAT 420
consensus_2823#1      ACGGTTGCTAGTATTTGTGTTGCATCTTATCCGGAGCAGACCGACAGCCCTTGGAAGGAT 257
                      ************************************************************

consensus_2823#0      GAATCGATCGAAAAAGGATTCGAATTCGTGCAGAAAACGGCTCGGGACATACGTTCGGCA 480
consensus_2823#1      GAATCGATCGAAAAAGGATTCGAATTCGTGCAGAAAACGGCTCGGGACATACGTTCGGCA 317
                      ************************************************************

consensus_2823#0      CGCAGCGACTACAATATTCCTAACAAGACCAAAACCGACGCATACTTCATCTGTAGCGAT 540
consensus_2823#1      CGCAGCGACTACAATATTCCTAACAAGACCAAAACCGACGCATACTTCATCTGTAGCGAT 377
                      ************************************************************

consensus_2823#0      GAAGGAGTACGCAGCGCACTGGAACGGTTCACTCTCGAGCTGGAAACGATGGCATTCTCG 600
consensus_2823#1      GAAGGAGTACGCAGCGCACTGGAACGGTTCACTCTCGAGCTGGAAACGATGGCATTCTCG 437
                      ************************************************************

consensus_2823#0      CAAGTGCACTTTGGCACTGTGCCTCCGGCAGGCTGCGCGATTCTGACCATTTCCGGTCAG 660
consensus_2823#1      CAAGTGCACTTTGGCACTGTGCCTCCGGCAGGCTGCGCGATTCTGACCATTTCCGGTCAG 497
                      ************************************************************

consensus_2823#0      TGTGTGGTGCACCT 674
consensus_2823#1      TGTGTG-------- 503
                      ******        




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)