cluster # 2826

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Anopheles gambiae
cluster # 2826 cluster # 2826 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2826#0 length = 613 sequences # 1

consensus_2826#1 length = 404 sequences # 1

consensusID : consensus_2826#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 613
fasta sequence

                              [ATGCCCCGAGGNNGAGATGAGTACAAGCCGGATCCGGTCGTGATTAAGGCGCGCACCATGCGCCTCAACCACAAACCGTTCACGTACAAGATCAGCCTGACGGCGGACAAGCCGGCCAAGGCGGCCGTGCGCGTCTTCCTCGGACCCAAGTACGACGAGTACGTGTGGACTGTACACGCTGAACGAGAACCGCGAGAACTTCTACGAGCTGGACTACTTCGTGCAGGAGCTGACGGCCGGCAAGAACGTGCTGACGCGCAGCTCGGTCAACTTCAACGGCTACGTCAAGGATCGCACCTCGTTCTACGAGCTGTACCGCAGCGTCATGGCCTGGATACACCGGGGCGGAGAAGTTCCAGCTCGACATGTCCGAGGCGCACTGCGGCTTCCCGAACCGGCTCATGCTGCCGAAGGGCAAGAAGGGCGGTATGCCGTTCCAGCTGTACGTGATCGTGTCGCCGTACAAGGCACCGCAGGTGTCCCAGTACAGCGGCTTCGATCCGGTGCTATCGTGCGGCGTCGGTTCCGGCGCGCGCTACATGGACTCGTACGCCTTCGGCTATCCGTTCGACCGTCCGATCGACGAGAAGCTGTTCTACGCTGTGCCGAACGC]

[+] EMBL AL934735             [ATGCCCCGAGGNNGAGATGAGTACAAGCCGGATCCGGTCGTGATTAAGGCGCGCACCATGCGCCTCAACCACAAACCGTTCACGTACAAGATCAGCCTGACGGCGGACAAGCCGGCCAAGGCGGCCGTGCGCGTCTTCCTCGGACCCAAGTACGACGAGTACGTGTGGACTGTACACGCTGAACGAGAACCGCGAGAACTTCTACGAGCTGGACTACTTCGTGCAGGAGCTGACGGCCGGCAAGAACGTGCTGACGCGCAGCTCGGTCAACTTCAACGGCTACGTCAAGGATCGCACCTCGTTCTACGAGCTGTACCGCAGCGTCATGGCCTGGATACACCGGGGCGGAGAAGTTCCAGCTCGACATGTCCGAGGCGCACTGCGGCTTCCCGAACCGGCTCATGCTGCCGAAGGGCAAGAAGGGCGGTATGCCGTTCCAGCTGTACGTGATCGTGTCGCCGTACAAGGCACCGCAGGTGTCCCAGTACAGCGGCTTCGATCCGGTGCTATCGTGCGGCGTCGGTTCCGGCGCGCGCTACATGGACTCGTACGCCTTCGGCTATCCGTTCGACCGTCCGATCGACGAGAAGCTGTTCTACGCTGTGCCGAACGC]




>consensus_2826#0
ATGCCCCGAGGNNGAGATGAGTACAAGCCGGATCCGGTCGTGATTAAGGCGCGCACCATG
CGCCTCAACCACAAACCGTTCACGTACAAGATCAGCCTGACGGCGGACAAGCCGGCCAAG
GCGGCCGTGCGCGTCTTCCTCGGACCCAAGTACGACGAGTACGTGTGGACTGTACACGCT
GAACGAGAACCGCGAGAACTTCTACGAGCTGGACTACTTCGTGCAGGAGCTGACGGCCGG
CAAGAACGTGCTGACGCGCAGCTCGGTCAACTTCAACGGCTACGTCAAGGATCGCACCTC
GTTCTACGAGCTGTACCGCAGCGTCATGGCCTGGATACACCGGGGCGGAGAAGTTCCAGC
TCGACATGTCCGAGGCGCACTGCGGCTTCCCGAACCGGCTCATGCTGCCGAAGGGCAAGA
AGGGCGGTATGCCGTTCCAGCTGTACGTGATCGTGTCGCCGTACAAGGCACCGCAGGTGT
CCCAGTACAGCGGCTTCGATCCGGTGCTATCGTGCGGCGTCGGTTCCGGCGCGCGCTACA
TGGACTCGTACGCCTTCGGCTATCCGTTCGACCGTCCGATCGACGAGAAGCTGTTCTACG
CTGTGCCGAACGC

consensusID : consensus_2826#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 404
fasta sequence

                              [ACCAGTTCAAGGAGCATCTGCCGGAGTACACGTACGAGGAGCTGTACTACCCGGGCGTGAAGATCGACGGCGTGGTGGTGGACAAGCTGCAGACGTACTTCGATCGCTTCGACGTGGACATCACCAACGCCATCGACATCGAGCCGGAACCGTACGTGCCGGGCAAGTACGAAGGCTTCGGCGAGATCGAGTACAAGCCGGATCCGGTCGTGATTAAGGCGCGCACCATGCGCCTCAACCACAAACCGTTCACGTACAAGATCAGCCTGACGGCGGACAAGCCGGCCAAGGCGGCCGTGCGCGTCTTCCTCGGACCCAAGTACGACGAGTACGGTGGACTGTACACGCTGAACGAGAACCGCGAGAACTTCTACGAGCTGGACTACTTCGTGCAGGAGCTGACG]

[+] EMBL BX625861             [ACCAGTTCAAGGAGCATCTGCCGGAGTACACGTACGAGGAGCTGTACTACCCGGGCGTGAAGATCGACGGCGTGGTGGTGGACAAGCTGCAGACGTACTTCGATCGCTTCGACGTGGACATCACCAACGCCATCGACATCGAGCCGGAACCGTACGTGCCGGGCAAGTACGAAGGCTTCGGCGAGATCGAGTACAAGCCGGATCCGGTCGTGATTAAGGCGCGCACCATGCGCCTCAACCACAAACCGTTCACGTACAAGATCAGCCTGACGGCGGACAAGCCGGCCAAGGCGGCCGTGCGCGTCTTCCTCGGACCCAAGTACGACGAGTACGGTGGACTGTACACGCTGAACGAGAACCGCGAGAACTTCTACGAGCTGGACTACTTCGTGCAGGAGCTGACG]




>consensus_2826#1
ACCAGTTCAAGGAGCATCTGCCGGAGTACACGTACGAGGAGCTGTACTACCCGGGCGTGA
AGATCGACGGCGTGGTGGTGGACAAGCTGCAGACGTACTTCGATCGCTTCGACGTGGACA
TCACCAACGCCATCGACATCGAGCCGGAACCGTACGTGCCGGGCAAGTACGAAGGCTTCG
GCGAGATCGAGTACAAGCCGGATCCGGTCGTGATTAAGGCGCGCACCATGCGCCTCAACC
ACAAACCGTTCACGTACAAGATCAGCCTGACGGCGGACAAGCCGGCCAAGGCGGCCGTGC
GCGTCTTCCTCGGACCCAAGTACGACGAGTACGGTGGACTGTACACGCTGAACGAGAACC
GCGAGAACTTCTACGAGCTGGACTACTTCGTGCAGGAGCTGACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2826#0      ------------------------------------------------------------
consensus_2826#1      ACCAGTTCAAGGAGCATCTGCCGGAGTACACGTACGAGGAGCTGTACTACCCGGGCGTGA 60
                                                                                  

consensus_2826#0      ------------------------------------------------------------
consensus_2826#1      AGATCGACGGCGTGGTGGTGGACAAGCTGCAGACGTACTTCGATCGCTTCGACGTGGACA 120
                                                                                  

consensus_2826#0      --------------------------------------------ATGCCCCGAGGNN--- 13
consensus_2826#1      TCACCAACGCCATCGACATCGAGCCGGAACCGTACGTGCCGGGCAAGTACGAAGGCTTCG 180
                                                                  * *  *  ***     

consensus_2826#0      --GAGAT-GAGTACAAGCCGGATCCGGTCGTGATTAAGGCGCGCACCATGCGCCTCAACC 70
consensus_2826#1      GCGAGATCGAGTACAAGCCGGATCCGGTCGTGATTAAGGCGCGCACCATGCGCCTCAACC 240
                        ***** ****************************************************

consensus_2826#0      ACAAACCGTTCACGTACAAGATCAGCCTGACGGCGGACAAGCCGGCCAAGGCGGCCGTGC 130
consensus_2826#1      ACAAACCGTTCACGTACAAGATCAGCCTGACGGCGGACAAGCCGGCCAAGGCGGCCGTGC 300
                      ************************************************************

consensus_2826#0      GCGTCTTCCTCGGACCCAAGTACGACGAGTACGTGTGGACTGTACACGCTGAACGAGAAC 190
consensus_2826#1      GCGTCTTCCTCGGACCCAAGTACGACGAGTACG-GTGGACTGTACACGCTGAACGAGAAC 359
                      ********************************* **************************

consensus_2826#0      CGCGAGAACTTCTACGAGCTGGACTACTTCGTGCAGGAGCTGACGGCCGGCAAGAACGTG 250
consensus_2826#1      CGCGAGAACTTCTACGAGCTGGACTACTTCGTGCAGGAGCTGACG--------------- 404
                      *********************************************               

consensus_2826#0      CTGACGCGCAGCTCGGTCAACTTCAACGGCTACGTCAAGGATCGCACCTCGTTCTACGAG 310
consensus_2826#1      ------------------------------------------------------------
                                                                                  

consensus_2826#0      CTGTACCGCAGCGTCATGGCCTGGATACACCGGGGCGGAGAAGTTCCAGCTCGACATGTC 370
consensus_2826#1      ------------------------------------------------------------
                                                                                  

consensus_2826#0      CGAGGCGCACTGCGGCTTCCCGAACCGGCTCATGCTGCCGAAGGGCAAGAAGGGCGGTAT 430
consensus_2826#1      ------------------------------------------------------------
                                                                                  

consensus_2826#0      GCCGTTCCAGCTGTACGTGATCGTGTCGCCGTACAAGGCACCGCAGGTGTCCCAGTACAG 490
consensus_2826#1      ------------------------------------------------------------
                                                                                  

consensus_2826#0      CGGCTTCGATCCGGTGCTATCGTGCGGCGTCGGTTCCGGCGCGCGCTACATGGACTCGTA 550
consensus_2826#1      ------------------------------------------------------------
                                                                                  

consensus_2826#0      CGCCTTCGGCTATCCGTTCGACCGTCCGATCGACGAGAAGCTGTTCTACGCTGTGCCGAA 610
consensus_2826#1      ------------------------------------------------------------
                                                                                  

consensus_2826#0      CGC 613
consensus_2826#1      ---