cluster # 2837

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Anopheles gambiae
cluster # 2837 cluster # 2837 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2837#0 length = 638 sequences # 1

consensus_2837#1 length = 586 sequences # 1

consensusID : consensus_2837#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 638
fasta sequence

                              [CTTGTGATTTTCCGCGATTTTGATCAATTTCACACAAAAATGCAGGACGATATGGACGGTACCCATTCGGAAGACTCCAGCTGCGAGCAGCTGCTAAAGGCAGGAACGCCACTACGGGAGCAGGACCGGTTCCTCCCGATTGCCAACATAACGAAAATAATGAAAAAGTCCGTACCGAATAATGGCAAAATTGCGAAAGAAGCGCGTGAATGCATTCAGGAGTGCGTGTCCGAGTTTATCTCCTTCATCACATCCGAGGCGAGCGATCGGTGCCACATGGAGAAGCGCAAAACCATCAACGGAGAGGACATTCTGTGTGCCATGTATGCGCTAGGTTTCGACAACTACATCGAACCGCTCAAGCTCTACCTGAGCAAGTACAAGGAAAACATAATGTCGGAGCGTCAAGCATCGGAGGAGCGCGGTGAGCCAGTGCAGACGGGAGAATCGAGCCGGCAGGGTAATGTTATTGGCAATGCCGAGATCATTTACCAGTCGGAGGACGGCACGCTGTACTTCAAGAACGAACCGTACGAGCAGATGTGATGTTAATGTTAGCTTGTCGATTGGCTACGTATTTTATTAAGCTATATTAAGGTGTTTCTTAATTTTCAATAAATGATCTTCATTAGTGCGCT]

[+] EMBL BX628260             [CTTGTGATTTTCCGCGATTTTGATCAATTTCACACAAAAATGCAGGACGATATGGACGGTACCCATTCGGAAGACTCCAGCTGCGAGCAGCTGCTAAAGGCAGGAACGCCACTACGGGAGCAGGACCGGTTCCTCCCGATTGCCAACATAACGAAAATAATGAAAAAGTCCGTACCGAATAATGGCAAAATTGCGAAAGAAGCGCGTGAATGCATTCAGGAGTGCGTGTCCGAGTTTATCTCCTTCATCACATCCGAGGCGAGCGATCGGTGCCACATGGAGAAGCGCAAAACCATCAACGGAGAGGACATTCTGTGTGCCATGTATGCGCTAGGTTTCGACAACTACATCGAACCGCTCAAGCTCTACCTGAGCAAGTACAAGGAAAACATAATGTCGGAGCGTCAAGCATCGGAGGAGCGCGGTGAGCCAGTGCAGACGGGAGAATCGAGCCGGCAGGGTAATGTTATTGGCAATGCCGAGATCATTTACCAGTCGGAGGACGGCACGCTGTACTTCAAGAACGAACCGTACGAGCAGATGTGATGTTAATGTTAGCTTGTCGATTGGCTACGTATTTTATTAAGCTATATTAAGGTGTTTCTTAATTTTCAATAAATGATCTTCATTAGTGCGCT]




>consensus_2837#0
CTTGTGATTTTCCGCGATTTTGATCAATTTCACACAAAAATGCAGGACGATATGGACGGT
ACCCATTCGGAAGACTCCAGCTGCGAGCAGCTGCTAAAGGCAGGAACGCCACTACGGGAG
CAGGACCGGTTCCTCCCGATTGCCAACATAACGAAAATAATGAAAAAGTCCGTACCGAAT
AATGGCAAAATTGCGAAAGAAGCGCGTGAATGCATTCAGGAGTGCGTGTCCGAGTTTATC
TCCTTCATCACATCCGAGGCGAGCGATCGGTGCCACATGGAGAAGCGCAAAACCATCAAC
GGAGAGGACATTCTGTGTGCCATGTATGCGCTAGGTTTCGACAACTACATCGAACCGCTC
AAGCTCTACCTGAGCAAGTACAAGGAAAACATAATGTCGGAGCGTCAAGCATCGGAGGAG
CGCGGTGAGCCAGTGCAGACGGGAGAATCGAGCCGGCAGGGTAATGTTATTGGCAATGCC
GAGATCATTTACCAGTCGGAGGACGGCACGCTGTACTTCAAGAACGAACCGTACGAGCAG
ATGTGATGTTAATGTTAGCTTGTCGATTGGCTACGTATTTTATTAAGCTATATTAAGGTG
TTTCTTAATTTTCAATAAATGATCTTCATTAGTGCGCT

consensusID : consensus_2837#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 586
fasta sequence

                              [GAGCAGCTGCTAAAGGCAGGAACGCCACTACGGGAGCAAGACCGGTTCCTCCCGATTGCCAACATAACGAAAATAATGAAAAAGTCCGTACCGAATAATGGCAAAATTGCGAAAGAAGCGCGTGAATGCATTCAGGAGTGCGTGTCCGAGTTTATCTCCTTCATCACATCCGAGGCGAGCGATCGGTGCCACATGGAGAAGCGCAAAACCATCAACGGAGAGGACATTCTGTGTGCCATGTATGCGCTAGGTTTCGACAACTACATCGAACCGCTCAAGCTCTACCTGAGCAAGTACAAGGAACAGAACATAATGTCGGAGCGTCAAGCATCGGAGGAGCGCGGTGAGCCAGTGCAGACGGGAGAATCGAGCCGGCAGGGAAATGATTCTGTAACCGCTCAAGTCCTTCCCACAGTTATTGGCAATGCCGAGATCATTTACCAGTCGGAGGACGGCACGCTGTACTTCAAGAACGAACCGTACGAGCAGATGTGATGTTAATGTTAGCTTGTCGATTAGCTACGTATTTTATTAAGCTATATTAAGGTGTTTCTTAATTTTCAATAAATGATCTTCATTAGTGCGC]

[+] EMBL BX609263             [GAGCAGCTGCTAAAGGCAGGAACGCCACTACGGGAGCAAGACCGGTTCCTCCCGATTGCCAACATAACGAAAATAATGAAAAAGTCCGTACCGAATAATGGCAAAATTGCGAAAGAAGCGCGTGAATGCATTCAGGAGTGCGTGTCCGAGTTTATCTCCTTCATCACATCCGAGGCGAGCGATCGGTGCCACATGGAGAAGCGCAAAACCATCAACGGAGAGGACATTCTGTGTGCCATGTATGCGCTAGGTTTCGACAACTACATCGAACCGCTCAAGCTCTACCTGAGCAAGTACAAGGAACAGAACATAATGTCGGAGCGTCAAGCATCGGAGGAGCGCGGTGAGCCAGTGCAGACGGGAGAATCGAGCCGGCAGGGAAATGATTCTGTAACCGCTCAAGTCCTTCCCACAGTTATTGGCAATGCCGAGATCATTTACCAGTCGGAGGACGGCACGCTGTACTTCAAGAACGAACCGTACGAGCAGATGTGATGTTAATGTTAGCTTGTCGATTAGCTACGTATTTTATTAAGCTATATTAAGGTGTTTCTTAATTTTCAATAAATGATCTTCATTAGTGCGC]




>consensus_2837#1
GAGCAGCTGCTAAAGGCAGGAACGCCACTACGGGAGCAAGACCGGTTCCTCCCGATTGCC
AACATAACGAAAATAATGAAAAAGTCCGTACCGAATAATGGCAAAATTGCGAAAGAAGCG
CGTGAATGCATTCAGGAGTGCGTGTCCGAGTTTATCTCCTTCATCACATCCGAGGCGAGC
GATCGGTGCCACATGGAGAAGCGCAAAACCATCAACGGAGAGGACATTCTGTGTGCCATG
TATGCGCTAGGTTTCGACAACTACATCGAACCGCTCAAGCTCTACCTGAGCAAGTACAAG
GAACAGAACATAATGTCGGAGCGTCAAGCATCGGAGGAGCGCGGTGAGCCAGTGCAGACG
GGAGAATCGAGCCGGCAGGGAAATGATTCTGTAACCGCTCAAGTCCTTCCCACAGTTATT
GGCAATGCCGAGATCATTTACCAGTCGGAGGACGGCACGCTGTACTTCAAGAACGAACCG
TACGAGCAGATGTGATGTTAATGTTAGCTTGTCGATTAGCTACGTATTTTATTAAGCTAT
ATTAAGGTGTTTCTTAATTTTCAATAAATGATCTTCATTAGTGCGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2837#0      CTTGTGATTTTCCGCGATTTTGATCAATTTCACACAAAAATGCAGGACGATATGGACGGT 60
consensus_2837#1      ------------------------------------------------------------
                                                                                  

consensus_2837#0      ACCCATTCGGAAGACTCCAGCTGCGAGCAGCTGCTAAAGGCAGGAACGCCACTACGGGAG 120
consensus_2837#1      ------------------------GAGCAGCTGCTAAAGGCAGGAACGCCACTACGGGAG 36
                                              ************************************

consensus_2837#0      CAGGACCGGTTCCTCCCGATTGCCAACATAACGAAAATAATGAAAAAGTCCGTACCGAAT 180
consensus_2837#1      CAAGACCGGTTCCTCCCGATTGCCAACATAACGAAAATAATGAAAAAGTCCGTACCGAAT 96
                      ** *********************************************************

consensus_2837#0      AATGGCAAAATTGCGAAAGAAGCGCGTGAATGCATTCAGGAGTGCGTGTCCGAGTTTATC 240
consensus_2837#1      AATGGCAAAATTGCGAAAGAAGCGCGTGAATGCATTCAGGAGTGCGTGTCCGAGTTTATC 156
                      ************************************************************

consensus_2837#0      TCCTTCATCACATCCGAGGCGAGCGATCGGTGCCACATGGAGAAGCGCAAAACCATCAAC 300
consensus_2837#1      TCCTTCATCACATCCGAGGCGAGCGATCGGTGCCACATGGAGAAGCGCAAAACCATCAAC 216
                      ************************************************************

consensus_2837#0      GGAGAGGACATTCTGTGTGCCATGTATGCGCTAGGTTTCGACAACTACATCGAACCGCTC 360
consensus_2837#1      GGAGAGGACATTCTGTGTGCCATGTATGCGCTAGGTTTCGACAACTACATCGAACCGCTC 276
                      ************************************************************

consensus_2837#0      AAGCTCTACCTGAGCAAGTACAAGGAA---AACATAATGTCGGAGCGTCAAGCATCGGAG 417
consensus_2837#1      AAGCTCTACCTGAGCAAGTACAAGGAACAGAACATAATGTCGGAGCGTCAAGCATCGGAG 336
                      ***************************   ******************************

consensus_2837#0      GAGCGCGGTGAGCCAGTGCAGACGGGAGAATCGAGCCGGCAGGGTAATG----------- 466
consensus_2837#1      GAGCGCGGTGAGCCAGTGCAGACGGGAGAATCGAGCCGGCAGGGAAATGATTCTGTAACC 396
                      ******************************************** ****           

consensus_2837#0      -------------------TTATTGGCAATGCCGAGATCATTTACCAGTCGGAGGACGGC 507
consensus_2837#1      GCTCAAGTCCTTCCCACAGTTATTGGCAATGCCGAGATCATTTACCAGTCGGAGGACGGC 456
                                         *****************************************

consensus_2837#0      ACGCTGTACTTCAAGAACGAACCGTACGAGCAGATGTGATGTTAATGTTAGCTTGTCGAT 567
consensus_2837#1      ACGCTGTACTTCAAGAACGAACCGTACGAGCAGATGTGATGTTAATGTTAGCTTGTCGAT 516
                      ************************************************************

consensus_2837#0      TGGCTACGTATTTTATTAAGCTATATTAAGGTGTTTCTTAATTTTCAATAAATGATCTTC 627
consensus_2837#1      TAGCTACGTATTTTATTAAGCTATATTAAGGTGTTTCTTAATTTTCAATAAATGATCTTC 576
                      * **********************************************************

consensus_2837#0      ATTAGTGCGCT 638
consensus_2837#1      ATTAGTGCGC- 586
                      **********