cluster # 2842

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Anopheles gambiae
cluster # 2842 cluster # 2842 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2842#0 length = 696 sequences # 1

consensus_2842#1 length = 475 sequences # 1

consensusID : consensus_2842#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 696
fasta sequence

                              [CCGGCACGATATCCGCGAGTGTATCCAGATGGAGAAGGACACTCGGGCCAAGGCATCTCAGATGCAACAGGGCGCTCTGGAGTCGCTAAAGCAATCGTTGTCTGATGTCCAACAGCTCATCCAGACAGAGATTGTAGTGAAGGAGGTGTCGAAGCCGTTGTTCGCTTTGGAGAGTACGATCAACGAGCTCGTCGGCCAGCCTATGAAGCTTGAGAGCATTGAGCTGGTGAATGCCATTACAACTCCTATTGCGAAGGTGACCGAGACCTTGAAGAACATCGATCTGCAGTCGGCTCATGTGGAACCGACGGTAGTGATGGAGGATTGTTTGCTGCAGATGTGCGAGTCGCTTGAAAAGGCACAGTCTGAGCATTCATTGGAACAGGCCAAAGAGGGCACAGTTCATAGCAAACTGCTCGAGACGGTCACTCATGTACAGCACGACATCCGCGAGTGTATCCAGATGGAGAAGGACACTCGGGCCAAGGCATCTCAGATGCAACAGGGCGCTCTGGAGTCGCTGAAGCAATCGTTGTCTGATGTCCAACAGCTTATCCAGACAGAGATTGTAGTGAAGGAGGTGTCGAAGCCGTTGTTCGCTTTGGAGAGTACGATCAACGAGCTCGTCGGGCAGCCTATGAAGCTTGAGAGCATTGAGCTGGTGAATGCCATTGCAACTCCTATTGCGAAGGTGAC]

[+] EMBL BM653396             [CCGGCACGATATCCGCGAGTGTATCCAGATGGAGAAGGACACTCGGGCCAAGGCATCTCAGATGCAACAGGGCGCTCTGGAGTCGCTAAAGCAATCGTTGTCTGATGTCCAACAGCTCATCCAGACAGAGATTGTAGTGAAGGAGGTGTCGAAGCCGTTGTTCGCTTTGGAGAGTACGATCAACGAGCTCGTCGGCCAGCCTATGAAGCTTGAGAGCATTGAGCTGGTGAATGCCATTACAACTCCTATTGCGAAGGTGACCGAGACCTTGAAGAACATCGATCTGCAGTCGGCTCATGTGGAACCGACGGTAGTGATGGAGGATTGTTTGCTGCAGATGTGCGAGTCGCTTGAAAAGGCACAGTCTGAGCATTCATTGGAACAGGCCAAAGAGGGCACAGTTCATAGCAAACTGCTCGAGACGGTCACTCATGTACAGCACGACATCCGCGAGTGTATCCAGATGGAGAAGGACACTCGGGCCAAGGCATCTCAGATGCAACAGGGCGCTCTGGAGTCGCTGAAGCAATCGTTGTCTGATGTCCAACAGCTTATCCAGACAGAGATTGTAGTGAAGGAGGTGTCGAAGCCGTTGTTCGCTTTGGAGAGTACGATCAACGAGCTCGTCGGGCAGCCTATGAAGCTTGAGAGCATTGAGCTGGTGAATGCCATTGCAACTCCTATTGCGAAGGTGAC]




>consensus_2842#0
CCGGCACGATATCCGCGAGTGTATCCAGATGGAGAAGGACACTCGGGCCAAGGCATCTCA
GATGCAACAGGGCGCTCTGGAGTCGCTAAAGCAATCGTTGTCTGATGTCCAACAGCTCAT
CCAGACAGAGATTGTAGTGAAGGAGGTGTCGAAGCCGTTGTTCGCTTTGGAGAGTACGAT
CAACGAGCTCGTCGGCCAGCCTATGAAGCTTGAGAGCATTGAGCTGGTGAATGCCATTAC
AACTCCTATTGCGAAGGTGACCGAGACCTTGAAGAACATCGATCTGCAGTCGGCTCATGT
GGAACCGACGGTAGTGATGGAGGATTGTTTGCTGCAGATGTGCGAGTCGCTTGAAAAGGC
ACAGTCTGAGCATTCATTGGAACAGGCCAAAGAGGGCACAGTTCATAGCAAACTGCTCGA
GACGGTCACTCATGTACAGCACGACATCCGCGAGTGTATCCAGATGGAGAAGGACACTCG
GGCCAAGGCATCTCAGATGCAACAGGGCGCTCTGGAGTCGCTGAAGCAATCGTTGTCTGA
TGTCCAACAGCTTATCCAGACAGAGATTGTAGTGAAGGAGGTGTCGAAGCCGTTGTTCGC
TTTGGAGAGTACGATCAACGAGCTCGTCGGGCAGCCTATGAAGCTTGAGAGCATTGAGCT
GGTGAATGCCATTGCAACTCCTATTGCGAAGGTGAC

consensusID : consensus_2842#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 475
fasta sequence

                              [CAGAATCCCCGAGGTTAACAGAGATTGTAGTGAAGGAGCGTGTCGAAGCCGTTGTTCGCTTTGGAGAGTACGATCAACGAGCTCATCGGCCAGACCTATNAAGCTCGAGAGCATTGAGCTGGTGAATGCCATTGCAACTCCTATTGCGAAGGTAACCGAGANCTTGNAAGAACATCGATCTGCGAGTCTGGCTCAAGTAGAGCCGACGGTAGTGATGGAGCATTCACTTGGAACAGGCCAAAGAAGGCACAGTTCATAGCAAACTGCTCGAGACGGTCCACTCATGTACAGCACGACATCGCGAGTGTATCCNGATGGAGAAGGACTCTCGGGCCAAGGCATCTCAGATGCAACAGGGCGCTCTGGAGTCGCTGAAGCAATCGTTGTCTGATGTCCAACAGCTCATCCAGACAGAGATTGTAGTGAAGTGAGGTGTCGAAGCCGGTTGTTCGCCTCTCTGGGGACGAAGGGTTAA]

[+] EMBL AL933376             [CAGAATCCCCGAGGTTAACAGAGATTGTAGTGAAGGAGCGTGTCGAAGCCGTTGTTCGCTTTGGAGAGTACGATCAACGAGCTCATCGGCCAGACCTATNAAGCTCGAGAGCATTGAGCTGGTGAATGCCATTGCAACTCCTATTGCGAAGGTAACCGAGANCTTGNAAGAACATCGATCTGCGAGTCTGGCTCAAGTAGAGCCGACGGTAGTGATGGAGCATTCACTTGGAACAGGCCAAAGAAGGCACAGTTCATAGCAAACTGCTCGAGACGGTCCACTCATGTACAGCACGACATCGCGAGTGTATCCNGATGGAGAAGGACTCTCGGGCCAAGGCATCTCAGATGCAACAGGGCGCTCTGGAGTCGCTGAAGCAATCGTTGTCTGATGTCCAACAGCTCATCCAGACAGAGATTGTAGTGAAGTGAGGTGTCGAAGCCGGTTGTTCGCCTCTCTGGGGACGAAGGGTTAA]




>consensus_2842#1
CAGAATCCCCGAGGTTAACAGAGATTGTAGTGAAGGAGCGTGTCGAAGCCGTTGTTCGCT
TTGGAGAGTACGATCAACGAGCTCATCGGCCAGACCTATNAAGCTCGAGAGCATTGAGCT
GGTGAATGCCATTGCAACTCCTATTGCGAAGGTAACCGAGANCTTGNAAGAACATCGATC
TGCGAGTCTGGCTCAAGTAGAGCCGACGGTAGTGATGGAGCATTCACTTGGAACAGGCCA
AAGAAGGCACAGTTCATAGCAAACTGCTCGAGACGGTCCACTCATGTACAGCACGACATC
GCGAGTGTATCCNGATGGAGAAGGACTCTCGGGCCAAGGCATCTCAGATGCAACAGGGCG
CTCTGGAGTCGCTGAAGCAATCGTTGTCTGATGTCCAACAGCTCATCCAGACAGAGATTG
TAGTGAAGTGAGGTGTCGAAGCCGGTTGTTCGCCTCTCTGGGGACGAAGGGTTAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2842#0      CCGGCACGATATCCGCGAGTGTATCCAGATGGAGAAGGACACTCGGGCCAAGGCATCTCA 60
consensus_2842#1      ------------------------------------------------------------
                                                                                  

consensus_2842#0      GATGCAACAGGGCGCTCTGGAGTCGCTAAAGCAATCGTTGTCTGATGTCCAACAGCTCAT 120
consensus_2842#1      -----------------------------------------------CAGAATCCCCGAG 13
                                                                        **   *  * 

consensus_2842#0      CCAGACAGAGATTGTAGTGAAGGAG-GTGTCGAAGCCGTTGTTCGCTTTGGAGAGTACGA 179
consensus_2842#1      GTTAACAGAGATTGTAGTGAAGGAGCGTGTCGAAGCCGTTGTTCGCTTTGGAGAGTACGA 73
                          ********************* **********************************

consensus_2842#0      TCAACGAGCTCGTCGGCCAG-CCTATGAAGCTTGAGAGCATTGAGCTGGTGAATGCCATT 238
consensus_2842#1      TCAACGAGCTCATCGGCCAGACCTATNAAGCTCGAGAGCATTGAGCTGGTGAATGCCATT 133
                      *********** ******** ***** ***** ***************************

consensus_2842#0      ACAACTCCTATTGCGAAGGTGACCGAGACCTTGAA-GAACATCGATCTGC-AGTC-GGCT 295
consensus_2842#1      GCAACTCCTATTGCGAAGGTAACCGAGANCTTGNAAGAACATCGATCTGCGAGTCTGGCT 193
                       ******************* ******* **** * ************** **** ****

consensus_2842#0      CATGTGGAACCGACGGTAGTGATGGAGGATTGTTTGCTGCAGATGTGCGAGTCGCTTGAA 355
consensus_2842#1      CAAGTAGAGCCGACGGTAGTGATGGAGCATT----------------------------- 224
                      ** ** ** ****************** ***                             

consensus_2842#0      AAGGCACAGTCTGAGCATTCATTGGAACAGGCCAAAGAGGGCACAGTTCATAGCAAACTG 415
consensus_2842#1      ----CAC--------------TTGGAACAGGCCAAAGAAGGCACAGTTCATAGCAAACTG 266
                          ***              ***************** *********************

consensus_2842#0      CTCGAGACGGTC-ACTCATGTACAGCACGACATCCGCGAGTGTATCCAGATGGAGAAGGA 474
consensus_2842#1      CTCGAGACGGTCCACTCATGTACAGCACGACATC-GCGAGTGTATCCNGATGGAGAAGGA 325
                      ************ ********************* ************ ************

consensus_2842#0      CACTCGGGCCAAGGCATCTCAGATGCAACAGGGCGCTCTGGAGTCGCTGAAGCAATCGTT 534
consensus_2842#1      CTCTCGGGCCAAGGCATCTCAGATGCAACAGGGCGCTCTGGAGTCGCTGAAGCAATCGTT 385
                      * **********************************************************

consensus_2842#0      GTCTGATGTCCAACAGCTTATCCAGACAGAGATTGTAGTGAAG-GAGGTGTCGAAGCCG- 592
consensus_2842#1      GTCTGATGTCCAACAGCTCATCCAGACAGAGATTGTAGTGAAGTGAGGTGTCGAAGCCGG 445
                      ****************** ************************ *************** 

consensus_2842#0      TTGTTCGCTTTGGAGAGTACGATCAACGAGCTCGTCGGGCAGCCTATGAAGCTTGAGAGC 652
consensus_2842#1      TTGTTCGCCTCTCTGGGGACGAAGGGTTAA------------------------------ 475
                      ******** *    * * ****      *                               

consensus_2842#0      ATTGAGCTGGTGAATGCCATTGCAACTCCTATTGCGAAGGTGAC 696
consensus_2842#1      --------------------------------------------