cluster # 2849

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Anopheles gambiae
cluster # 2849 cluster # 2849 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2849#0 length = 657 sequences # 1

consensus_2849#1 length = 449 sequences # 1

consensusID : consensus_2849#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 657
fasta sequence

                              [CCGAGCGAGCGAATCGTACGTGCACGGGTCCGTCGGTCCGTCTGCGGAAGAAGCAAAGGCAGTAATAATAATAAAGAAAAAACGCACGCAGTCGGTCGCGCGTGTACTGTCTATCCGTACGGGCGCTACACACAGTTCGTTATCACCAGCGAAGGAGAGCGAGCGCTTTGTTCTGCATCGCATCAGTTGGTGCGGTACAAGTGCGGGCTTGCAGCTCCGTTTGTGGGCCGTTGATAGAATTTCACAAGTGCGGCTGCGACAGATTCGACTCATTCCGCCGATCATCGCGGCCGTGCGAGGAACGACGAGCCGCTCGGAGCGTTTAGTGTAATTGCATTTGTTAGGCCACCGTTTTTCGCCCAAATTTTCCTTCCTCTCCCCCTTGCTGAAGTGAAGAAAGTTTGCAAGCCCGCAGGGGGGTGGTAATTCTGCAGCGCAAACGTTTGTGCTGCAGCAAAACACGGCCTCGGAAAAGTCATCTCGTCACCGTGTGTGTGTGTGTGTGCGCGCTAAAAATACGTTCCCTTTCTTCCACCTCACCAAAAAGAAAAAAAAATTTGTGTGTGTGAGTTTTTTTGGCTTTCATTGCGCGTACATTTTCCACTCCGTGAAAGCCGCCTATGACGGACGGACGCTTTTCCTTCCAATCGTTGCACC]

[+] EMBL BM641982             [CCGAGCGAGCGAATCGTACGTGCACGGGTCCGTCGGTCCGTCTGCGGAAGAAGCAAAGGCAGTAATAATAATAAAGAAAAAACGCACGCAGTCGGTCGCGCGTGTACTGTCTATCCGTACGGGCGCTACACACAGTTCGTTATCACCAGCGAAGGAGAGCGAGCGCTTTGTTCTGCATCGCATCAGTTGGTGCGGTACAAGTGCGGGCTTGCAGCTCCGTTTGTGGGCCGTTGATAGAATTTCACAAGTGCGGCTGCGACAGATTCGACTCATTCCGCCGATCATCGCGGCCGTGCGAGGAACGACGAGCCGCTCGGAGCGTTTAGTGTAATTGCATTTGTTAGGCCACCGTTTTTCGCCCAAATTTTCCTTCCTCTCCCCCTTGCTGAAGTGAAGAAAGTTTGCAAGCCCGCAGGGGGGTGGTAATTCTGCAGCGCAAACGTTTGTGCTGCAGCAAAACACGGCCTCGGAAAAGTCATCTCGTCACCGTGTGTGTGTGTGTGTGCGCGCTAAAAATACGTTCCCTTTCTTCCACCTCACCAAAAAGAAAAAAAAATTTGTGTGTGTGAGTTTTTTTGGCTTTCATTGCGCGTACATTTTCCACTCCGTGAAAGCCGCCTATGACGGACGGACGCTTTTCCTTCCAATCGTTGCACC]




>consensus_2849#0
CCGAGCGAGCGAATCGTACGTGCACGGGTCCGTCGGTCCGTCTGCGGAAGAAGCAAAGGC
AGTAATAATAATAAAGAAAAAACGCACGCAGTCGGTCGCGCGTGTACTGTCTATCCGTAC
GGGCGCTACACACAGTTCGTTATCACCAGCGAAGGAGAGCGAGCGCTTTGTTCTGCATCG
CATCAGTTGGTGCGGTACAAGTGCGGGCTTGCAGCTCCGTTTGTGGGCCGTTGATAGAAT
TTCACAAGTGCGGCTGCGACAGATTCGACTCATTCCGCCGATCATCGCGGCCGTGCGAGG
AACGACGAGCCGCTCGGAGCGTTTAGTGTAATTGCATTTGTTAGGCCACCGTTTTTCGCC
CAAATTTTCCTTCCTCTCCCCCTTGCTGAAGTGAAGAAAGTTTGCAAGCCCGCAGGGGGG
TGGTAATTCTGCAGCGCAAACGTTTGTGCTGCAGCAAAACACGGCCTCGGAAAAGTCATC
TCGTCACCGTGTGTGTGTGTGTGTGCGCGCTAAAAATACGTTCCCTTTCTTCCACCTCAC
CAAAAAGAAAAAAAAATTTGTGTGTGTGAGTTTTTTTGGCTTTCATTGCGCGTACATTTT
CCACTCCGTGAAAGCCGCCTATGACGGACGGACGCTTTTCCTTCCAATCGTTGCACC

consensusID : consensus_2849#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 449
fasta sequence

                              [ATGCCGAGGNTAAGGAGAGCGAGCGCTTTGTTCTGCATCGCATCAGTTGGTGCGGTACAAGTGCGGGCTTGCAGCTCCGTTTGTGGGCCGTTGATAGAATTTCACAAGTGCGGCTGCGACAGATTCGACTCATTCCGCCGATCATCGCGGCCGTGCGAGGAACGACGAGCCGCTCGGAGCGTTTAGTGTAATTGCATTTGTTAGGCCACCGTTTTTCGCCCAAATTTTCCTTCCTCTCCCCCTTGCTGAAGTGAAGAAAGTTTGCAAGCCCGCAGGGGGGTGGTAATTCTGCAGCGCAAACGTTTGTGCTGCAGCAAAACACGGCCTCGGAAAAGTCATCTCGTCACCGTGTGTGTGTGTGTGTGCGCGCTAAAAATACGTTCCCTTTCTTCCACCTCACCAAAAAGAAAAAAAAATTTGTGTGTGTGAGTTTTTTGGCTTTCATTGCG]

[+] EMBL AL932496             [ATGCCGAGGNTAAGGAGAGCGAGCGCTTTGTTCTGCATCGCATCAGTTGGTGCGGTACAAGTGCGGGCTTGCAGCTCCGTTTGTGGGCCGTTGATAGAATTTCACAAGTGCGGCTGCGACAGATTCGACTCATTCCGCCGATCATCGCGGCCGTGCGAGGAACGACGAGCCGCTCGGAGCGTTTAGTGTAATTGCATTTGTTAGGCCACCGTTTTTCGCCCAAATTTTCCTTCCTCTCCCCCTTGCTGAAGTGAAGAAAGTTTGCAAGCCCGCAGGGGGGTGGTAATTCTGCAGCGCAAACGTTTGTGCTGCAGCAAAACACGGCCTCGGAAAAGTCATCTCGTCACCGTGTGTGTGTGTGTGTGCGCGCTAAAAATACGTTCCCTTTCTTCCACCTCACCAAAAAGAAAAAAAAATTTGTGTGTGTGAGTTTTTTGGCTTTCATTGCG]




>consensus_2849#1
ATGCCGAGGNTAAGGAGAGCGAGCGCTTTGTTCTGCATCGCATCAGTTGGTGCGGTACAA
GTGCGGGCTTGCAGCTCCGTTTGTGGGCCGTTGATAGAATTTCACAAGTGCGGCTGCGAC
AGATTCGACTCATTCCGCCGATCATCGCGGCCGTGCGAGGAACGACGAGCCGCTCGGAGC
GTTTAGTGTAATTGCATTTGTTAGGCCACCGTTTTTCGCCCAAATTTTCCTTCCTCTCCC
CCTTGCTGAAGTGAAGAAAGTTTGCAAGCCCGCAGGGGGGTGGTAATTCTGCAGCGCAAA
CGTTTGTGCTGCAGCAAAACACGGCCTCGGAAAAGTCATCTCGTCACCGTGTGTGTGTGT
GTGTGCGCGCTAAAAATACGTTCCCTTTCTTCCACCTCACCAAAAAGAAAAAAAAATTTG
TGTGTGTGAGTTTTTTGGCTTTCATTGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2849#0      CCGAGCGAGCGAATCGTACGTGCACGGGTCCGTCGGTCCGTCTGCGGAAGAAGCAAAGGC 60
consensus_2849#1      ------------------------------------------------------------
                                                                                  

consensus_2849#0      AGTAATAATAATAAAGAAAAAACGCACGCAGTCGGTCGCGCGTGTACTGTCTATCCGTAC 120
consensus_2849#1      ------------------------------------------------------------
                                                                                  

consensus_2849#0      GGGCGCTACACACAGTTCGTTATCACCAGCG-AAGGAGAGCGAGCGCTTTGTTCTGCATC 179
consensus_2849#1      ---------------------ATGCCGAGGNTAAGGAGAGCGAGCGCTTTGTTCTGCATC 39
                                           **  * **   ****************************

consensus_2849#0      GCATCAGTTGGTGCGGTACAAGTGCGGGCTTGCAGCTCCGTTTGTGGGCCGTTGATAGAA 239
consensus_2849#1      GCATCAGTTGGTGCGGTACAAGTGCGGGCTTGCAGCTCCGTTTGTGGGCCGTTGATAGAA 99
                      ************************************************************

consensus_2849#0      TTTCACAAGTGCGGCTGCGACAGATTCGACTCATTCCGCCGATCATCGCGGCCGTGCGAG 299
consensus_2849#1      TTTCACAAGTGCGGCTGCGACAGATTCGACTCATTCCGCCGATCATCGCGGCCGTGCGAG 159
                      ************************************************************

consensus_2849#0      GAACGACGAGCCGCTCGGAGCGTTTAGTGTAATTGCATTTGTTAGGCCACCGTTTTTCGC 359
consensus_2849#1      GAACGACGAGCCGCTCGGAGCGTTTAGTGTAATTGCATTTGTTAGGCCACCGTTTTTCGC 219
                      ************************************************************

consensus_2849#0      CCAAATTTTCCTTCCTCTCCCCCTTGCTGAAGTGAAGAAAGTTTGCAAGCCCGCAGGGGG 419
consensus_2849#1      CCAAATTTTCCTTCCTCTCCCCCTTGCTGAAGTGAAGAAAGTTTGCAAGCCCGCAGGGGG 279
                      ************************************************************

consensus_2849#0      GTGGTAATTCTGCAGCGCAAACGTTTGTGCTGCAGCAAAACACGGCCTCGGAAAAGTCAT 479
consensus_2849#1      GTGGTAATTCTGCAGCGCAAACGTTTGTGCTGCAGCAAAACACGGCCTCGGAAAAGTCAT 339
                      ************************************************************

consensus_2849#0      CTCGTCACCGTGTGTGTGTGTGTGTGCGCGCTAAAAATACGTTCCCTTTCTTCCACCTCA 539
consensus_2849#1      CTCGTCACCGTGTGTGTGTGTGTGTGCGCGCTAAAAATACGTTCCCTTTCTTCCACCTCA 399
                      ************************************************************

consensus_2849#0      CCAAAAAGAAAAAAAAATTTGTGTGTGTGAGTTTTTTTGGCTTTCATTGCGCGTACATTT 599
consensus_2849#1      CCAAAAAGAAAAAAAAATTTGTGTGTGTGAGTTTTTT-GGCTTTCATTGCG--------- 449
                      ************************************* *************         

consensus_2849#0      TCCACTCCGTGAAAGCCGCCTATGACGGACGGACGCTTTTCCTTCCAATCGTTGCACC 657
consensus_2849#1      ----------------------------------------------------------