These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2849#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 657 fasta sequence [CCGAGCGAGCGAATCGTACGTGCACGGGTCCGTCGGTCCGTCTGCGGAAGAAGCAAAGGCAGTAATAATAATAAAGAAAAAACGCACGCAGTCGGTCGCGCGTGTACTGTCTATCCGTACGGGCGCTACACACAGTTCGTTATCACCAGCGAAGGAGAGCGAGCGCTTTGTTCTGCATCGCATCAGTTGGTGCGGTACAAGTGCGGGCTTGCAGCTCCGTTTGTGGGCCGTTGATAGAATTTCACAAGTGCGGCTGCGACAGATTCGACTCATTCCGCCGATCATCGCGGCCGTGCGAGGAACGACGAGCCGCTCGGAGCGTTTAGTGTAATTGCATTTGTTAGGCCACCGTTTTTCGCCCAAATTTTCCTTCCTCTCCCCCTTGCTGAAGTGAAGAAAGTTTGCAAGCCCGCAGGGGGGTGGTAATTCTGCAGCGCAAACGTTTGTGCTGCAGCAAAACACGGCCTCGGAAAAGTCATCTCGTCACCGTGTGTGTGTGTGTGTGCGCGCTAAAAATACGTTCCCTTTCTTCCACCTCACCAAAAAGAAAAAAAAATTTGTGTGTGTGAGTTTTTTTGGCTTTCATTGCGCGTACATTTTCCACTCCGTGAAAGCCGCCTATGACGGACGGACGCTTTTCCTTCCAATCGTTGCACC] [+] EMBL BM641982 [CCGAGCGAGCGAATCGTACGTGCACGGGTCCGTCGGTCCGTCTGCGGAAGAAGCAAAGGCAGTAATAATAATAAAGAAAAAACGCACGCAGTCGGTCGCGCGTGTACTGTCTATCCGTACGGGCGCTACACACAGTTCGTTATCACCAGCGAAGGAGAGCGAGCGCTTTGTTCTGCATCGCATCAGTTGGTGCGGTACAAGTGCGGGCTTGCAGCTCCGTTTGTGGGCCGTTGATAGAATTTCACAAGTGCGGCTGCGACAGATTCGACTCATTCCGCCGATCATCGCGGCCGTGCGAGGAACGACGAGCCGCTCGGAGCGTTTAGTGTAATTGCATTTGTTAGGCCACCGTTTTTCGCCCAAATTTTCCTTCCTCTCCCCCTTGCTGAAGTGAAGAAAGTTTGCAAGCCCGCAGGGGGGTGGTAATTCTGCAGCGCAAACGTTTGTGCTGCAGCAAAACACGGCCTCGGAAAAGTCATCTCGTCACCGTGTGTGTGTGTGTGTGCGCGCTAAAAATACGTTCCCTTTCTTCCACCTCACCAAAAAGAAAAAAAAATTTGTGTGTGTGAGTTTTTTTGGCTTTCATTGCGCGTACATTTTCCACTCCGTGAAAGCCGCCTATGACGGACGGACGCTTTTCCTTCCAATCGTTGCACC] consensusID : consensus_2849#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 449 fasta sequence [ATGCCGAGGNTAAGGAGAGCGAGCGCTTTGTTCTGCATCGCATCAGTTGGTGCGGTACAAGTGCGGGCTTGCAGCTCCGTTTGTGGGCCGTTGATAGAATTTCACAAGTGCGGCTGCGACAGATTCGACTCATTCCGCCGATCATCGCGGCCGTGCGAGGAACGACGAGCCGCTCGGAGCGTTTAGTGTAATTGCATTTGTTAGGCCACCGTTTTTCGCCCAAATTTTCCTTCCTCTCCCCCTTGCTGAAGTGAAGAAAGTTTGCAAGCCCGCAGGGGGGTGGTAATTCTGCAGCGCAAACGTTTGTGCTGCAGCAAAACACGGCCTCGGAAAAGTCATCTCGTCACCGTGTGTGTGTGTGTGTGCGCGCTAAAAATACGTTCCCTTTCTTCCACCTCACCAAAAAGAAAAAAAAATTTGTGTGTGTGAGTTTTTTGGCTTTCATTGCG] [+] EMBL AL932496 [ATGCCGAGGNTAAGGAGAGCGAGCGCTTTGTTCTGCATCGCATCAGTTGGTGCGGTACAAGTGCGGGCTTGCAGCTCCGTTTGTGGGCCGTTGATAGAATTTCACAAGTGCGGCTGCGACAGATTCGACTCATTCCGCCGATCATCGCGGCCGTGCGAGGAACGACGAGCCGCTCGGAGCGTTTAGTGTAATTGCATTTGTTAGGCCACCGTTTTTCGCCCAAATTTTCCTTCCTCTCCCCCTTGCTGAAGTGAAGAAAGTTTGCAAGCCCGCAGGGGGGTGGTAATTCTGCAGCGCAAACGTTTGTGCTGCAGCAAAACACGGCCTCGGAAAAGTCATCTCGTCACCGTGTGTGTGTGTGTGTGCGCGCTAAAAATACGTTCCCTTTCTTCCACCTCACCAAAAAGAAAAAAAAATTTGTGTGTGTGAGTTTTTTGGCTTTCATTGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2849#0 CCGAGCGAGCGAATCGTACGTGCACGGGTCCGTCGGTCCGTCTGCGGAAGAAGCAAAGGC 60 consensus_2849#1 ------------------------------------------------------------ consensus_2849#0 AGTAATAATAATAAAGAAAAAACGCACGCAGTCGGTCGCGCGTGTACTGTCTATCCGTAC 120 consensus_2849#1 ------------------------------------------------------------ consensus_2849#0 GGGCGCTACACACAGTTCGTTATCACCAGCG-AAGGAGAGCGAGCGCTTTGTTCTGCATC 179 consensus_2849#1 ---------------------ATGCCGAGGNTAAGGAGAGCGAGCGCTTTGTTCTGCATC 39 ** * ** **************************** consensus_2849#0 GCATCAGTTGGTGCGGTACAAGTGCGGGCTTGCAGCTCCGTTTGTGGGCCGTTGATAGAA 239 consensus_2849#1 GCATCAGTTGGTGCGGTACAAGTGCGGGCTTGCAGCTCCGTTTGTGGGCCGTTGATAGAA 99 ************************************************************ consensus_2849#0 TTTCACAAGTGCGGCTGCGACAGATTCGACTCATTCCGCCGATCATCGCGGCCGTGCGAG 299 consensus_2849#1 TTTCACAAGTGCGGCTGCGACAGATTCGACTCATTCCGCCGATCATCGCGGCCGTGCGAG 159 ************************************************************ consensus_2849#0 GAACGACGAGCCGCTCGGAGCGTTTAGTGTAATTGCATTTGTTAGGCCACCGTTTTTCGC 359 consensus_2849#1 GAACGACGAGCCGCTCGGAGCGTTTAGTGTAATTGCATTTGTTAGGCCACCGTTTTTCGC 219 ************************************************************ consensus_2849#0 CCAAATTTTCCTTCCTCTCCCCCTTGCTGAAGTGAAGAAAGTTTGCAAGCCCGCAGGGGG 419 consensus_2849#1 CCAAATTTTCCTTCCTCTCCCCCTTGCTGAAGTGAAGAAAGTTTGCAAGCCCGCAGGGGG 279 ************************************************************ consensus_2849#0 GTGGTAATTCTGCAGCGCAAACGTTTGTGCTGCAGCAAAACACGGCCTCGGAAAAGTCAT 479 consensus_2849#1 GTGGTAATTCTGCAGCGCAAACGTTTGTGCTGCAGCAAAACACGGCCTCGGAAAAGTCAT 339 ************************************************************ consensus_2849#0 CTCGTCACCGTGTGTGTGTGTGTGTGCGCGCTAAAAATACGTTCCCTTTCTTCCACCTCA 539 consensus_2849#1 CTCGTCACCGTGTGTGTGTGTGTGTGCGCGCTAAAAATACGTTCCCTTTCTTCCACCTCA 399 ************************************************************ consensus_2849#0 CCAAAAAGAAAAAAAAATTTGTGTGTGTGAGTTTTTTTGGCTTTCATTGCGCGTACATTT 599 consensus_2849#1 CCAAAAAGAAAAAAAAATTTGTGTGTGTGAGTTTTTT-GGCTTTCATTGCG--------- 449 ************************************* ************* consensus_2849#0 TCCACTCCGTGAAAGCCGCCTATGACGGACGGACGCTTTTCCTTCCAATCGTTGCACC 657 consensus_2849#1 ---------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||