These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2857#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 654 fasta sequence [GGCAGAATCGGNCACGAGGTACGCTGTTGCTTTGCACGTGCTTCGCAAGTGTTGCTCCGAAATGTTTAAATTTTCTTTCCAAGTAGAGCCGGAAGATGAATCGCCATCAACCACATCGAAGGATGAGAAAGCGAAACCAGAATCCAGCACAGAGGAGAGCAAATCAACTGTGAAGGGAGACAGTGATGTGTACCCTTGCGAGGAACTTGATTTTTGAGTCCTTACAATCCAAACAAAACTGCCGTCAAATCCGGAAGTAAACGAGTAGCTTTACACCGGGAGCAGAGCTAGCGATCGATTACCTTAACCATCTTGCCCTCCTGGATGAAACCTTCACGGACGATATCGTGACGGCCGAAACGGACCACATCGGACCTGATACCGAACCGGTACGAGGGTGGGCTGAAGGTGTGGGAATGTACGTACGATTTAGGGAGAGTTTTNATCCGCATGCGAGGAAAGGCGGGCCGAGTTTGGCGGGAAGAAGGTGCTGGGATCTTGGCTGTGGTGCAGGCCTGCTCGGTATCGAGGCACTGCTGCTGGGCGCCAGCTGTGTACACGTTTCAGGATTACAACAAGGATGTACTGACGAAGCTACGATGGTCAACTACGACCTTAACTGTCGGCTCGGTCAACGGAAAGCGACGAGTCGAA] [+] EMBL BX468694 [GGCAGAATCGGNCACGAGGTACGCTGTTGCTTTGCACGTGCTTCGCAAGTGTTGCTCCGAAATGTTTAAATTTTCTTTCCAAGTAGAGCCGGAAGATGAATCGCCATCAACCACATCGAAGGATGAGAAAGCGAAACCAGAATCCAGCACAGAGGAGAGCAAATCAACTGTGAAGGGAGACAGTGATGTGTACCCTTGCGAGGAACTTGATTTTTGAGTCCTTACAATCCAAACAAAACTGCCGTCAAATCCGGAAGTAAACGAGTAGCTTTACACCGGGAGCAGAGCTAGCGATCGATTACCTTAACCATCTTGCCCTCCTGGATGAAACCTTCACGGACGATATCGTGACGGCCGAAACGGACCACATCGGACCTGATACCGAACCGGTACGAGGGTGGGCTGAAGGTGTGGGAATGTACGTACGATTTAGGGAGAGTTTTNATCCGCATGCGAGGAAAGGCGGGCCGAGTTTGGCGGGAAGAAGGTGCTGGGATCTTGGCTGTGGTGCAGGCCTGCTCGGTATCGAGGCACTGCTGCTGGGCGCCAGCTGTGTACACGTTTCAGGATTACAACAAGGATGTACTGACGAAGCTACGATGGTCAACTACGACCTTAACTGTCGGCTCGGTCAACGGAAAGCGACGAGTCGAA] consensusID : consensus_2857#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 516 fasta sequence [ATTGCCCGAGGNNCTCTCAATCACCGCTGTTGCTTTGCACGTGCTTCGCAAGTGTTGCTCCGAAATGTTTAAATTTTCTTTCCAAGTAGAGCCGGAAGATGAATCGCCATCAACCACATCGAAGGATGAGAAAGCGAAACCAGAATCCAGCACAGAGGAGAGCAAATCAACTGTGAAGGGAGACAGTGATGTGTACCCTTGGCGAGGAACTTGATTTTGAGTCCTTACAATCCAACAAAACTGNCGTCAATCCGGAAGTAACGAGTAGCTTTACACCGGGAGCAGAGCTAGCGATCGATTACCTTAACCATCTTGCCCTCCTGGATGAAACCTTCACGGACGATATCGTGACGGCCGAAACGGACCACTCGGACCTGATACCGAACCGGTACGAGGGTGGGCTGAAGGTGTGGGAATGTACGTACGATTTGGGAGAGTTTTTATCCGCATGCGAGGAAAGGCGGGCCGAGTTTGGCGGGAAGAAGGTGCTGGATCTTGGCTGTGGTGCAGGCCTGC] [+] EMBL AL932222 [ATTGCCCGAGGNNCTCTCAATCACCGCTGTTGCTTTGCACGTGCTTCGCAAGTGTTGCTCCGAAATGTTTAAATTTTCTTTCCAAGTAGAGCCGGAAGATGAATCGCCATCAACCACATCGAAGGATGAGAAAGCGAAACCAGAATCCAGCACAGAGGAGAGCAAATCAACTGTGAAGGGAGACAGTGATGTGTACCCTTGGCGAGGAACTTGATTTTGAGTCCTTACAATCCAACAAAACTGNCGTCAATCCGGAAGTAACGAGTAGCTTTACACCGGGAGCAGAGCTAGCGATCGATTACCTTAACCATCTTGCCCTCCTGGATGAAACCTTCACGGACGATATCGTGACGGCCGAAACGGACCACTCGGACCTGATACCGAACCGGTACGAGGGTGGGCTGAAGGTGTGGGAATGTACGTACGATTTGGGAGAGTTTTTATCCGCATGCGAGGAAAGGCGGGCCGAGTTTGGCGGGAAGAAGGTGCTGGATCTTGGCTGTGGTGCAGGCCTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2857#0 ---GGCAGAATCGGNCACGAGGTACGCTGTTGCTTTGCACGTGCTTCGCAAGTGTTGCTC 57 consensus_2857#1 ATTGCCCGAGGNNCTCTCAATCACCGCTGTTGCTTTGCACGTGCTTCGCAAGTGTTGCTC 60 * * ** * * * ************************************ consensus_2857#0 CGAAATGTTTAAATTTTCTTTCCAAGTAGAGCCGGAAGATGAATCGCCATCAACCACATC 117 consensus_2857#1 CGAAATGTTTAAATTTTCTTTCCAAGTAGAGCCGGAAGATGAATCGCCATCAACCACATC 120 ************************************************************ consensus_2857#0 GAAGGATGAGAAAGCGAAACCAGAATCCAGCACAGAGGAGAGCAAATCAACTGTGAAGGG 177 consensus_2857#1 GAAGGATGAGAAAGCGAAACCAGAATCCAGCACAGAGGAGAGCAAATCAACTGTGAAGGG 180 ************************************************************ consensus_2857#0 AGACAGTGATGTGTACCCTTG-CGAGGAACTTGATTTTTGAGTCCTTACAATCCAAACAA 236 consensus_2857#1 AGACAGTGATGTGTACCCTTGGCGAGGAACTTGATTTT-GAGTCCTTACAATCCAA-CAA 238 ********************* **************** ***************** *** consensus_2857#0 AACTGCCGTCAAATCCGGAAGTAAACGAGTAGCTTTACACCGGGAGCAGAGCTAGCGATC 296 consensus_2857#1 AACTGNCGTCAA-TCCGGAAGTAA-CGAGTAGCTTTACACCGGGAGCAGAGCTAGCGATC 296 ***** ****** *********** *********************************** consensus_2857#0 GATTACCTTAACCATCTTGCCCTCCTGGATGAAACCTTCACGGACGATATCGTGACGGCC 356 consensus_2857#1 GATTACCTTAACCATCTTGCCCTCCTGGATGAAACCTTCACGGACGATATCGTGACGGCC 356 ************************************************************ consensus_2857#0 GAAACGGACCACATCGGACCTGATACCGAACCGGTACGAGGGTGGGCTGAAGGTGTGGGA 416 consensus_2857#1 GAAACGGACCAC-TCGGACCTGATACCGAACCGGTACGAGGGTGGGCTGAAGGTGTGGGA 415 ************ *********************************************** consensus_2857#0 ATGTACGTACGATTTAGGGAGAGTTTTNATCCGCATGCGAGGAAAGGCGGGCCGAGTTTG 476 consensus_2857#1 ATGTACGTACGATTT-GGGAGAGTTTTTATCCGCATGCGAGGAAAGGCGGGCCGAGTTTG 474 *************** *********** ******************************** consensus_2857#0 GCGGGAAGAAGGTGCTGGGATCTTGGCTGTGGTGCAGGCCTGCTCGGTATCGAGGCACTG 536 consensus_2857#1 GCGGGAAGAAGGTGCTGG-ATCTTGGCTGTGGTGCAGGCCTGC----------------- 516 ****************** ************************ consensus_2857#0 CTGCTGGGCGCCAGCTGTGTACACGTTTCAGGATTACAACAAGGATGTACTGACGAAGCT 596 consensus_2857#1 ------------------------------------------------------------ consensus_2857#0 ACGATGGTCAACTACGACCTTAACTGTCGGCTCGGTCAACGGAAAGCGACGAGTCGAA 654 consensus_2857#1 ---------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||