cluster # 2872

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Anopheles gambiae
cluster # 2872 cluster # 2872 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2872#0 length = 668 sequences # 1

consensus_2872#1 length = 485 sequences # 1

consensusID : consensus_2872#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 668
fasta sequence

                              [CCGGCGACACCGAACGATACGGACGGCTCAAAAGGGGGCCAACGCTTCTTGGTCGCTCGTCACCCACACCGTGGGACGTGATTTGCTTCTGGCTGTGTGGTGACTTGGATTGGGCACAGCGAAAGAGAAAGAGCCAGTGCGTTACTGTGTTGTGTGTGCGTGTGCTGTTGGTGTGTGATTCTGTGTCACGAACGTTTGGTGTGTGCCATGGTGCGCCGACGGTGCGGTGATAAGCAGTAGAATTGTTTCACCCCACACTCTCCAGTTTGTGCCAGCATCAGCAGAAACGCCCGTCCAGCCGGACCAAGAGATCACCGACCGATTAACAAAAAAGCATAGAAGAAGGCACTACCCGTGGTTAGACGACTTGCGGCATCGGAGAGCAGCCGGCATACATCCGTTTTTTTCTTCCCTATTGCTGCTGATTCACCCCTTGCTGAACCGAACACAATGGAGCAATCGGCCAACAGCAAGGTACATCTGGAGAAGGCACAGAACTTTATGCGCCAGTACCGGGATCCGGAGTCGCGCGAGCTGAAGAAGCTGTCCGCCAACCAGTTCATGGACGTCTGGAGTCATTACGATCGCGATGGGAACGGCTACATCGAAGGATCCGAGCTGGACGGATTTCTCAAGGAGTTCGTCTCGAGCGCCAACGCAACCGACAT]

[+] EMBL BM593487             [CCGGCGACACCGAACGATACGGACGGCTCAAAAGGGGGCCAACGCTTCTTGGTCGCTCGTCACCCACACCGTGGGACGTGATTTGCTTCTGGCTGTGTGGTGACTTGGATTGGGCACAGCGAAAGAGAAAGAGCCAGTGCGTTACTGTGTTGTGTGTGCGTGTGCTGTTGGTGTGTGATTCTGTGTCACGAACGTTTGGTGTGTGCCATGGTGCGCCGACGGTGCGGTGATAAGCAGTAGAATTGTTTCACCCCACACTCTCCAGTTTGTGCCAGCATCAGCAGAAACGCCCGTCCAGCCGGACCAAGAGATCACCGACCGATTAACAAAAAAGCATAGAAGAAGGCACTACCCGTGGTTAGACGACTTGCGGCATCGGAGAGCAGCCGGCATACATCCGTTTTTTTCTTCCCTATTGCTGCTGATTCACCCCTTGCTGAACCGAACACAATGGAGCAATCGGCCAACAGCAAGGTACATCTGGAGAAGGCACAGAACTTTATGCGCCAGTACCGGGATCCGGAGTCGCGCGAGCTGAAGAAGCTGTCCGCCAACCAGTTCATGGACGTCTGGAGTCATTACGATCGCGATGGGAACGGCTACATCGAAGGATCCGAGCTGGACGGATTTCTCAAGGAGTTCGTCTCGAGCGCCAACGCAACCGACAT]




>consensus_2872#0
CCGGCGACACCGAACGATACGGACGGCTCAAAAGGGGGCCAACGCTTCTTGGTCGCTCGT
CACCCACACCGTGGGACGTGATTTGCTTCTGGCTGTGTGGTGACTTGGATTGGGCACAGC
GAAAGAGAAAGAGCCAGTGCGTTACTGTGTTGTGTGTGCGTGTGCTGTTGGTGTGTGATT
CTGTGTCACGAACGTTTGGTGTGTGCCATGGTGCGCCGACGGTGCGGTGATAAGCAGTAG
AATTGTTTCACCCCACACTCTCCAGTTTGTGCCAGCATCAGCAGAAACGCCCGTCCAGCC
GGACCAAGAGATCACCGACCGATTAACAAAAAAGCATAGAAGAAGGCACTACCCGTGGTT
AGACGACTTGCGGCATCGGAGAGCAGCCGGCATACATCCGTTTTTTTCTTCCCTATTGCT
GCTGATTCACCCCTTGCTGAACCGAACACAATGGAGCAATCGGCCAACAGCAAGGTACAT
CTGGAGAAGGCACAGAACTTTATGCGCCAGTACCGGGATCCGGAGTCGCGCGAGCTGAAG
AAGCTGTCCGCCAACCAGTTCATGGACGTCTGGAGTCATTACGATCGCGATGGGAACGGC
TACATCGAAGGATCCGAGCTGGACGGATTTCTCAAGGAGTTCGTCTCGAGCGCCAACGCA
ACCGACAT

consensusID : consensus_2872#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 485
fasta sequence

                              [TCTTGAATTGGGGTAAGTTTTCGCCTGCGCCACGTTCGCTCGTTTGTGTAGTACCGTGAGCTCTGTTTATCAATTGACTGTAAGCACAGCGAAAGAGAAAGAGCCAGTGCGTTACTGTGTTGTGTGTGCGTGTGCTGTTGGTGTGTGATTCTGTGTCACGAACGTTTGGTGTGTGCCATGGTGCGCCGACGGTGCGGTGATAAGCAGTAGAATTGTTTCACCCCACACTCTCCAGTTTGTGCCAGCATCAGCAGAAACGCCCGTCCAGCCGGACCAAGAGATCACCAAACGGTAAACAAAAAGCCTAGAAGAAGGCACTACCCTTGGGTTAGACGACTTGCGGCATCGGAGAGCAGCCGGCATACATCCGTTTTTTCTTCCCTATTGCTGCTGATTCACCCCTTGCTGAACCGAACACAATGGAGCAATCGGCCAACAGCAAGGTACATCTGGAGAAGGCACAGAACTTTATGCGCCAGTACCGG]

[+] EMBL BX619472             [TCTTGAATTGGGGTAAGTTTTCGCCTGCGCCACGTTCGCTCGTTTGTGTAGTACCGTGAGCTCTGTTTATCAATTGACTGTAAGCACAGCGAAAGAGAAAGAGCCAGTGCGTTACTGTGTTGTGTGTGCGTGTGCTGTTGGTGTGTGATTCTGTGTCACGAACGTTTGGTGTGTGCCATGGTGCGCCGACGGTGCGGTGATAAGCAGTAGAATTGTTTCACCCCACACTCTCCAGTTTGTGCCAGCATCAGCAGAAACGCCCGTCCAGCCGGACCAAGAGATCACCAAACGGTAAACAAAAAGCCTAGAAGAAGGCACTACCCTTGGGTTAGACGACTTGCGGCATCGGAGAGCAGCCGGCATACATCCGTTTTTTCTTCCCTATTGCTGCTGATTCACCCCTTGCTGAACCGAACACAATGGAGCAATCGGCCAACAGCAAGGTACATCTGGAGAAGGCACAGAACTTTATGCGCCAGTACCGG]




>consensus_2872#1
TCTTGAATTGGGGTAAGTTTTCGCCTGCGCCACGTTCGCTCGTTTGTGTAGTACCGTGAG
CTCTGTTTATCAATTGACTGTAAGCACAGCGAAAGAGAAAGAGCCAGTGCGTTACTGTGT
TGTGTGTGCGTGTGCTGTTGGTGTGTGATTCTGTGTCACGAACGTTTGGTGTGTGCCATG
GTGCGCCGACGGTGCGGTGATAAGCAGTAGAATTGTTTCACCCCACACTCTCCAGTTTGT
GCCAGCATCAGCAGAAACGCCCGTCCAGCCGGACCAAGAGATCACCAAACGGTAAACAAA
AAGCCTAGAAGAAGGCACTACCCTTGGGTTAGACGACTTGCGGCATCGGAGAGCAGCCGG
CATACATCCGTTTTTTCTTCCCTATTGCTGCTGATTCACCCCTTGCTGAACCGAACACAA
TGGAGCAATCGGCCAACAGCAAGGTACATCTGGAGAAGGCACAGAACTTTATGCGCCAGT
ACCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2872#0      CCGGCGACACCGAACGATACGGACGGCTCAAAAGGGGGCCAACGCTTCTTGGTCGCTCGT 60
consensus_2872#1      -------------------------TCTTGAATTGGGGTAAGTTTTCGCCTGCGCCACGT 35
                                                **  **  ****  *    *     *   * ***

consensus_2872#0      CACCCACACCGTGGGACGTGATTTGCTTCTGGCTGTGTGGTGACTTGGATTGGGCACAGC 120
consensus_2872#1      TCGCTCGTTTGTGTAGTACCGTGAGCT-CTGTTTATCAATTGACT----GTAAGCACAGC 90
                         *      ***        *  *** ***  * *    *****     *  *******

consensus_2872#0      GAAAGAGAAAGAGCCAGTGCGTTACTGTGTTGTGTGTGCGTGTGCTGTTGGTGTGTGATT 180
consensus_2872#1      GAAAGAGAAAGAGCCAGTGCGTTACTGTGTTGTGTGTGCGTGTGCTGTTGGTGTGTGATT 150
                      ************************************************************

consensus_2872#0      CTGTGTCACGAACGTTTGGTGTGTGCCATGGTGCGCCGACGGTGCGGTGATAAGCAGTAG 240
consensus_2872#1      CTGTGTCACGAACGTTTGGTGTGTGCCATGGTGCGCCGACGGTGCGGTGATAAGCAGTAG 210
                      ************************************************************

consensus_2872#0      AATTGTTTCACCCCACACTCTCCAGTTTGTGCCAGCATCAGCAGAAACGCCCGTCCAGCC 300
consensus_2872#1      AATTGTTTCACCCCACACTCTCCAGTTTGTGCCAGCATCAGCAGAAACGCCCGTCCAGCC 270
                      ************************************************************

consensus_2872#0      GGACCAAGAGATCACCGACCGATTAACAAAAAAGCATAGAAGAAGGCACTACCCGTGG-T 359
consensus_2872#1      GGACCAAGAGATCACCAAACGGTAAACAAAAA-GCCTAGAAGAAGGCACTACCCTTGGGT 329
                      **************** * ** * ******** ** ****************** *** *

consensus_2872#0      TAGACGACTTGCGGCATCGGAGAGCAGCCGGCATACATCCGTTTTTTTCTTCCCTATTGC 419
consensus_2872#1      TAGACGACTTGCGGCATCGGAGAGCAGCCGGCATACATCCGTTTTTT-CTTCCCTATTGC 388
                      *********************************************** ************

consensus_2872#0      TGCTGATTCACCCCTTGCTGAACCGAACACAATGGAGCAATCGGCCAACAGCAAGGTACA 479
consensus_2872#1      TGCTGATTCACCCCTTGCTGAACCGAACACAATGGAGCAATCGGCCAACAGCAAGGTACA 448
                      ************************************************************

consensus_2872#0      TCTGGAGAAGGCACAGAACTTTATGCGCCAGTACCGGGATCCGGAGTCGCGCGAGCTGAA 539
consensus_2872#1      TCTGGAGAAGGCACAGAACTTTATGCGCCAGTACCGG----------------------- 485
                      *************************************                       

consensus_2872#0      GAAGCTGTCCGCCAACCAGTTCATGGACGTCTGGAGTCATTACGATCGCGATGGGAACGG 599
consensus_2872#1      ------------------------------------------------------------
                                                                                  

consensus_2872#0      CTACATCGAAGGATCCGAGCTGGACGGATTTCTCAAGGAGTTCGTCTCGAGCGCCAACGC 659
consensus_2872#1      ------------------------------------------------------------
                                                                                  

consensus_2872#0      AACCGACAT 668
consensus_2872#1      ---------