These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2892#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 553 fasta sequence [TTTTTCTCCATTCCGTTCCCATAACTACAGACTCGCCACTTGAAGACGTTTAAACCGTAAAACAAGGGAAACGAGCCCCAAGTGTCCATTTGGATGCACTCCAATAGCGTTCGGGGAAGCATCCGAGAGAGAGTGTGTTTGTGTGTGTGTAACCTGCATGCAAAAAAAAAACGAAATATGCCAACCAAAACTGAAATCGAAGTGAAGCAGCTCGTGAGAAGTCAGCTTTTTTCTTCTATATTGTAAATGTGTGCCCCCCCCCACCCCACCAGAAGACGGTAGTCAGCCCAGTTTTGATCGAGGAAAGTGACACGAGAGTGAGACTGTGTGCCTAGCACGAAAACAGAAGAAAAACCCTCCCATTGCAAAGTCCTTTATTTGGTGCGTTGATGAGATGAAACGCACCCCCCCCGCCCCCCCCCCCCTTTGCACAGAAAGTGCCTCCAGCGCCGGTTGTTGTGGGTTGGCAAGGCAGGGAGGGGGATCCAGCTGAACGAACACCCCCGCCTTCCCAGCATCTAGCGTCTACGGTCTGCAACTGCGAATTCGTTCT] [+] EMBL BX626708 [TTTTTCTCCATTCCGTTCCCATAACTACAGACTCGCCACTTGAAGACGTTTAAACCGTAAAACAAGGGAAACGAGCCCCAAGTGTCCATTTGGATGCACTCCAATAGCGTTCGGGGAAGCATCCGAGAGAGAGTGTGTTTGTGTGTGTGTAACCTGCATGCAAAAAAAAAACGAAATATGCCAACCAAAACTGAAATCGAAGTGAAGCAGCTCGTGAGAAGTCAGCTTTTTTCTTCTATATTGTAAATGTGTGCCCCCCCCCACCCCACCAGAAGACGGTAGTCAGCCCAGTTTTGATCGAGGAAAGTGACACGAGAGTGAGACTGTGTGCCTAGCACGAAAACAGAAGAAAAACCCTCCCATTGCAAAGTCCTTTATTTGGTGCGTTGATGAGATGAAACGCACCCCCCCCGCCCCCCCCCCCCTTTGCACAGAAAGTGCCTCCAGCGCCGGTTGTTGTGGGTTGGCAAGGCAGGGAGGGGGATCCAGCTGAACGAACACCCCCGCCTTCCCAGCATCTAGCGTCTACGGTCTGCAACTGCGAATTCGTTCT] consensusID : consensus_2892#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence [AAGGGATGGGCACGCTGCAGAAGACTCGCCACTTGAAGACGTTTAAACCGTAAAACAAGGGGGAAACGAGCCAGTTCAGACCGAACCAAGTGTCCATTTTGATGCACTCCAATAGCGCTCGGGGAAGCATCCGAGAGAGAGTGTGTCTGTGTGTTTGTAACCTGCATGCAAAAAACGAAATATGCCAACCAAAACTGAAATCGAAGAGAAGCAGCTCGTGAGAAGTCAGCTTTTTTCTTCTATATTGTAAATGTGTGCCCCCCACCAGAAGACGGTAGTCCGTCCAGTTTTGATCGAGGAAAGTGACACGAGAGTGAGACTGTGTGCCTAGCACGAAAACAGACGAAGAATCCTCCCATTGCAAAGTCCTTTATTTGGTGCGTCGATGCGAGATGAAACGCACCTTCCCCCCTTTGCACAGAAAGTGCCTCCAGCGCCGGTTGTTGTGGGTTGGCAGGGCAGGGAGGGAGAGCCAGCTGAACGAACACCCCCGCCTTCCCAGCGTCTAGCGTCTACGGTCTGCAACTGCGAATTCGTTCTTGCGAAAACT] [+] EMBL BX623779 [AAGGGATGGGCACGCTGCAGAAGACTCGCCACTTGAAGACGTTTAAACCGTAAAACAAGGGGGAAACGAGCCAGTTCAGACCGAACCAAGTGTCCATTTTGATGCACTCCAATAGCGCTCGGGGAAGCATCCGAGAGAGAGTGTGTCTGTGTGTTTGTAACCTGCATGCAAAAAACGAAATATGCCAACCAAAACTGAAATCGAAGAGAAGCAGCTCGTGAGAAGTCAGCTTTTTTCTTCTATATTGTAAATGTGTGCCCCCCACCAGAAGACGGTAGTCCGTCCAGTTTTGATCGAGGAAAGTGACACGAGAGTGAGACTGTGTGCCTAGCACGAAAACAGACGAAGAATCCTCCCATTGCAAAGTCCTTTATTTGGTGCGTCGATGCGAGATGAAACGCACCTTCCCCCCTTTGCACAGAAAGTGCCTCCAGCGCCGGTTGTTGTGGGTTGGCAGGGCAGGGAGGGAGAGCCAGCTGAACGAACACCCCCGCCTTCCCAGCGTCTAGCGTCTACGGTCTGCAACTGCGAATTCGTTCTTGCGAAAACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2892#0 TTTTTCTCCATTCCGTTCCCATAACTACAGACTCGCCACTTGAAGACGTTTAAACCGTAA 60 consensus_2892#1 -------AAGGGATGGGCACGCTGCAGAAGACTCGCCACTTGAAGACGTTTAAACCGTAA 53 * * * * ******************************** consensus_2892#0 AACAAGGG--AAACGAGCC-------------CCAAGTGTCCATTTGGATGCACTCCAAT 105 consensus_2892#1 AACAAGGGGGAAACGAGCCAGTTCAGACCGAACCAAGTGTCCATTTTGATGCACTCCAAT 113 ******** ********* ************** ************* consensus_2892#0 AGCGTTCGGGGAAGCATCCGAGAGAGAGTGTGTTTGTGTGTGTGTAACCTGCATGCAAAA 165 consensus_2892#1 AGCGCTCGGGGAAGCATCCGAGAGAGAGTGTGTCTGTGTGTTTGTAACCTGCATGCAAAA 173 **** **************************** ******* ****************** consensus_2892#0 AAAAAACGAAATATGCCAACCAAAACTGAAATCGAAGTGAAGCAGCTCGTGAGAAGTCAG 225 consensus_2892#1 AA----CGAAATATGCCAACCAAAACTGAAATCGAAGAGAAGCAGCTCGTGAGAAGTCAG 229 ** ******************************* ********************** consensus_2892#0 CTTTTTTCTTCTATATTGTAAATGTGTGCCCCCCCCCACCCCACCAGAAGACGGTAGTCA 285 consensus_2892#1 CTTTTTTCTTCTATATTGTAAATGTGTGCCCCCC--------ACCAGAAGACGGTAGTCC 281 ********************************** ***************** consensus_2892#0 GCCCAGTTTTGATCGAGGAAAGTGACACGAGAGTGAGACTGTGTGCCTAGCACGAAAACA 345 consensus_2892#1 GTCCAGTTTTGATCGAGGAAAGTGACACGAGAGTGAGACTGTGTGCCTAGCACGAAAACA 341 * ********************************************************** consensus_2892#0 GAAGAAAAACCCTCCCATTGCAAAGTCCTTTATTTGGTGCGTTGATG--AGATGAAACGC 403 consensus_2892#1 GACGAAGAATCCTCCCATTGCAAAGTCCTTTATTTGGTGCGTCGATGCGAGATGAAACGC 401 ** *** ** ******************************** **** *********** consensus_2892#0 ACCCCCCCCGCCCCCCCCCCCCTTTGCACAGAAAGTGCCTCCAGCGCCGGTTGTTGTGGG 463 consensus_2892#1 ACCTTCCCC-----------CCTTTGCACAGAAAGTGCCTCCAGCGCCGGTTGTTGTGGG 450 *** **** **************************************** consensus_2892#0 TTGGCAAGGCAGGGAGGGGGATCCAGCTGAACGAACACCCCCGCCTTCCCAGCATCTAGC 523 consensus_2892#1 TTGGCAGGGCAGGGAGGGAGAGCCAGCTGAACGAACACCCCCGCCTTCCCAGCGTCTAGC 510 ****** *********** ** ******************************* ****** consensus_2892#0 GTCTACGGTCTGCAACTGCGAATTCGTTCT---------- 553 consensus_2892#1 GTCTACGGTCTGCAACTGCGAATTCGTTCTTGCGAAAACT 550 ****************************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||