cluster # 2894

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Anopheles gambiae
cluster # 2894 cluster # 2894 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2894#0 length = 685 sequences # 1

consensus_2894#1 length = 376 sequences # 1

consensusID : consensus_2894#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 685
fasta sequence

                              [CAGATCGGCCGAGGAGNGTATCGCCTTTGGCATGCGAACAAGCTGCGATTTGATATCAGTCCCAATTACGTGGCTGAGGCGCGTAACACTAACACACAACGCCGATAGTCTCGATTGTTGTCTCAAGTGCTACGCTCCCGCTGATAGGTTATCATCGTTCATCGTCTTCGTAGTTTGGAACGACCGTGTCCAACCGTGGAAGTGCCGTCTCGCAGTGTCCGGGCAGCGTGTCAACAGTTTACACAAGCCAGCCCAATCATGGGCTTTTGGAGACGGCGATTCCGTGTCATCGAGCAAACTCCTTGCTGTGGTAGAGCCCTCCGACCAGGACATTGCTATCCAGCACGTGCCATCGGCTGGCTCATCGGTGGGAATCGATTTCCTGCTGCTTGTTTGCTTCCTGGTGATGATCTTGCTGGTCGGGTTCGTGTTGCGACTGTTTCTTCAAATGTGGCGTGCTCGCATCGAGTGCCAATGGACGGAGGATGCGGCCGTAGTACGGCGATTAGTTTAGCGAGATAGTGCAAATTGTTGAACGCATCGAGCGCTGCCGGAAGGGAGCGAGTGGCGGGAACAGGGCCGAAAGTGGGAGGTTGATCTGTGATATTTGGTGCACTTGCGTCATGGGCGATCATAAACATGTGTGGTGTGATTTTATTGAAGGGTGAGACATTATTTTTACTGC]

[+] EMBL BX468626             [CAGATCGGCCGAGGAGNGTATCGCCTTTGGCATGCGAACAAGCTGCGATTTGATATCAGTCCCAATTACGTGGCTGAGGCGCGTAACACTAACACACAACGCCGATAGTCTCGATTGTTGTCTCAAGTGCTACGCTCCCGCTGATAGGTTATCATCGTTCATCGTCTTCGTAGTTTGGAACGACCGTGTCCAACCGTGGAAGTGCCGTCTCGCAGTGTCCGGGCAGCGTGTCAACAGTTTACACAAGCCAGCCCAATCATGGGCTTTTGGAGACGGCGATTCCGTGTCATCGAGCAAACTCCTTGCTGTGGTAGAGCCCTCCGACCAGGACATTGCTATCCAGCACGTGCCATCGGCTGGCTCATCGGTGGGAATCGATTTCCTGCTGCTTGTTTGCTTCCTGGTGATGATCTTGCTGGTCGGGTTCGTGTTGCGACTGTTTCTTCAAATGTGGCGTGCTCGCATCGAGTGCCAATGGACGGAGGATGCGGCCGTAGTACGGCGATTAGTTTAGCGAGATAGTGCAAATTGTTGAACGCATCGAGCGCTGCCGGAAGGGAGCGAGTGGCGGGAACAGGGCCGAAAGTGGGAGGTTGATCTGTGATATTTGGTGCACTTGCGTCATGGGCGATCATAAACATGTGTGGTGTGATTTTATTGAAGGGTGAGACATTATTTTTACTGC]




>consensus_2894#0
CAGATCGGCCGAGGAGNGTATCGCCTTTGGCATGCGAACAAGCTGCGATTTGATATCAGT
CCCAATTACGTGGCTGAGGCGCGTAACACTAACACACAACGCCGATAGTCTCGATTGTTG
TCTCAAGTGCTACGCTCCCGCTGATAGGTTATCATCGTTCATCGTCTTCGTAGTTTGGAA
CGACCGTGTCCAACCGTGGAAGTGCCGTCTCGCAGTGTCCGGGCAGCGTGTCAACAGTTT
ACACAAGCCAGCCCAATCATGGGCTTTTGGAGACGGCGATTCCGTGTCATCGAGCAAACT
CCTTGCTGTGGTAGAGCCCTCCGACCAGGACATTGCTATCCAGCACGTGCCATCGGCTGG
CTCATCGGTGGGAATCGATTTCCTGCTGCTTGTTTGCTTCCTGGTGATGATCTTGCTGGT
CGGGTTCGTGTTGCGACTGTTTCTTCAAATGTGGCGTGCTCGCATCGAGTGCCAATGGAC
GGAGGATGCGGCCGTAGTACGGCGATTAGTTTAGCGAGATAGTGCAAATTGTTGAACGCA
TCGAGCGCTGCCGGAAGGGAGCGAGTGGCGGGAACAGGGCCGAAAGTGGGAGGTTGATCT
GTGATATTTGGTGCACTTGCGTCATGGGCGATCATAAACATGTGTGGTGTGATTTTATTG
AAGGGTGAGACATTATTTTTACTGC

consensusID : consensus_2894#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 376
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGTTTAGCGAGATAGTGCAAATTGTTAAACGCATCGAGCGCTTCTGGAAGGGAGCGAGTGTTGGGAACAGGGCCGAAAGTGGGAGGTTGATCTGTGATATTTGGTGCACTTGCGTCATGGGCGATTATAAACATGTGTGGTGTGATTTTATTGAAGGGAGGGACATTATTTTACTGCCCCGTTTATTTCACTGCAGCGACGTATGACGACACACACGCACACACTGTACTGTGATAGATGATGGAAGGGGGTTCGAAAATAACGATGGATTGGAGTGCTCGAACCAGAAAATCAGCTGATGGTGATCAGCTGAGGAGAACTGAAATTAATAAAAAGTCAGTGAAGTAGCT]

[+] EMBL BM640330             [CCGCCCACGCGTCCGCCCACGCGTCCGGTTTAGCGAGATAGTGCAAATTGTTAAACGCATCGAGCGCTTCTGGAAGGGAGCGAGTGTTGGGAACAGGGCCGAAAGTGGGAGGTTGATCTGTGATATTTGGTGCACTTGCGTCATGGGCGATTATAAACATGTGTGGTGTGATTTTATTGAAGGGAGGGACATTATTTTACTGCCCCGTTTATTTCACTGCAGCGACGTATGACGACACACACGCACACACTGTACTGTGATAGATGATGGAAGGGGGTTCGAAAATAACGATGGATTGGAGTGCTCGAACCAGAAAATCAGCTGATGGTGATCAGCTGAGGAGAACTGAAATTAATAAAAAGTCAGTGAAGTAGCT]




>consensus_2894#1
CCGCCCACGCGTCCGCCCACGCGTCCGGTTTAGCGAGATAGTGCAAATTGTTAAACGCAT
CGAGCGCTTCTGGAAGGGAGCGAGTGTTGGGAACAGGGCCGAAAGTGGGAGGTTGATCTG
TGATATTTGGTGCACTTGCGTCATGGGCGATTATAAACATGTGTGGTGTGATTTTATTGA
AGGGAGGGACATTATTTTACTGCCCCGTTTATTTCACTGCAGCGACGTATGACGACACAC
ACGCACACACTGTACTGTGATAGATGATGGAAGGGGGTTCGAAAATAACGATGGATTGGA
GTGCTCGAACCAGAAAATCAGCTGATGGTGATCAGCTGAGGAGAACTGAAATTAATAAAA
AGTCAGTGAAGTAGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2894#0      CAGATCGGCCGAGGAGNGTATCGCCTTTGGCATGCGAACAAGCTGCGATTTGATATCAGT 60
consensus_2894#1      ------------------------------------------------------------
                                                                                  

consensus_2894#0      CCCAATTACGTGGCTGAGGCGCGTAACACTAACACACAACGCCGATAGTCTCGATTGTTG 120
consensus_2894#1      ------------------------------------------------------------
                                                                                  

consensus_2894#0      TCTCAAGTGCTACGCTCCCGCTGATAGGTTATCATCGTTCATCGTCTTCGTAGTTTGGAA 180
consensus_2894#1      ------------------------------------------------------------
                                                                                  

consensus_2894#0      CGACCGTGTCCAACCGTGGAAGTGCCGTCTCGCAGTGTCCGGGCAGCGTGTCAACAGTTT 240
consensus_2894#1      ------------------------------------------------------------
                                                                                  

consensus_2894#0      ACACAAGCCAGCCCAATCATGGGCTTTTGGAGACGGCGATTCCGTGTCATCGAGCAAACT 300
consensus_2894#1      --------CCGCCCACGCGTCCGCCCACGCGTCCGG---TTTAGCGAGATAGTGCAAATT 49
                              * *****  * *  **    *    ***   **  * *  ** * ***** *

consensus_2894#0      CCTTGCTGTGGTAGAGCCCTCCGACCAGGACATTGCTATCCAGCACGTGCCATCGGCTGG 360
consensus_2894#1      GTTAAACGCA-TCGAGCGCTTCTGGAAGGG-----------AGCGAGTGTTGGGAACAGG 97
                        *    *   * **** ** *    ***            ***  ***       * **

consensus_2894#0      CTCATCGGTGGGAATCGATTTCCTGCTGCTTGTTTGCTTCCTGGTGATGATCTTGCTGGT 420
consensus_2894#1      GCCGAAAGTGGGAGGTTGATCTGTGATATTT--------------GGTGCACTTGCG--- 140
                        *    ******      *   ** *  **              * **  *****    

consensus_2894#0      CGGGTTCGTGTTGCGACTGTTTCTTCAAATGTGGCGTGCTCGCATCGAGTGCCAATGGAC 480
consensus_2894#1      -----TCATGG-GCGATTATAAA--CATGTGTGGTGTGATTTTATTGAAGG--------- 183
                           ** **  **** * *     **  ***** *** *   ** **  *         

consensus_2894#0      GGAGGATGCGGCCGTAGTACGGCGATTAGTTTAGCGAGATAGTGCAAATTGTTGAACGCA 540
consensus_2894#1      GAGGGACATTATTTTACTGCCCCGTTTATTTCACTGCAGCGACGTATGACGACACACACG 243
                      *  ***        ** * *  ** *** ** *  *       * *    *    ** * 

consensus_2894#0      TCGAGCGCTGCCGGAAGGGAGCGAGTGGCGGGAACAGGGCCGAAAGTGGGAGGTTGATCT 600
consensus_2894#1      -CACACACTGT---ACTGTGATAGATGATGGAAGGGGGTTCGAAAATA--ACGATGGATT 297
                       *   * ***    *  *       **  ** *   **  ***** *   * * **   *

consensus_2894#0      GTGATATTTGGTGCACTTGCGTCATGGGCGATCATAAACATGTGTGGTGTGATTTTATTG 660
consensus_2894#1      GGAGTGCTCGAACCAGAAAATCAGCTGATGGTGATCAGCTGAGGAGAACTGAAATTAATA 357
                      *   *  * *   **           *  * * ** * *    * *   ***  *** * 

consensus_2894#0      AAGGGTGAG-ACATTATTTTTACTGC 685
consensus_2894#1      AAAAGTCAGTGAAGTAGCT------- 376
                      **  ** **   * **  *