|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2900#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 697 fasta sequence
[CTTCAACTTAATCTCAAGCGTGTAGCCAGCGCCGTATAGATTTTTCAGGTGTTGCGTCGACCCGAGACATCTGGAAATATAAACAAAGCGTCATGCATACCTCGCCTCACGCGCAAACAGTAGGTCGCATTTCAAACCTACCTTAGCTCTCCTTTGACCATGATTCCTACGCGCGAACATAGAGCGTCAGCTCTTCCATCGAATGTGTCGTCAGCATCGCGCAACGTTTTCCGTGGAAGCTGGCAAGGATAGTGTCCCACAGGAATCTTTTCGATTTCGGATCCATCCCAGTTGACGGTTCATCGAGTAGAACTACTTTGGGAGCACCGACCATTGCCATAGCATAGCTAAGTTTACGCCTAGTACCGCCGGAACAGTGTTGGGTTTGCTTATTGGCATGCTCGTTTATGTGCAATCCCGTGAGATACGTCGATATCAATCTGTTCAAATCTTTGCCACGCACGCCCCGGATGCGGGCATACAATTCTAGATGTTCGCGAACAGTAACGTTCTTCCACAGAGCGTCGTGTTGGGGACAATAGCCCAATGTCTTGAATGCGTCGTCTTGATTGATAGTGATACTGTGACCTGCAACACGCACCGTGCCACGCGTTGGAGCCGTTTCTCCTGTCATGATTTTCATGGTGGTCGTTTTGCCGGCACCATTGTGTCCGAGCAAAACCAGTACCTCCCCAGC]
[+] EMBL BX610392 [CTTCAACTTAATCTCAAGCGTGTAGCCAGCGCCGTATAGATTTTTCAGGTGTTGCGTCGACCCGAGACATCTGGAAATATAAACAAAGCGTCATGCATACCTCGCCTCACGCGCAAACAGTAGGTCGCATTTCAAACCTACCTTAGCTCTCCTTTGACCATGATTCCTACGCGCGAACATAGAGCGTCAGCTCTTCCATCGAATGTGTCGTCAGCATCGCGCAACGTTTTCCGTGGAAGCTGGCAAGGATAGTGTCCCACAGGAATCTTTTCGATTTCGGATCCATCCCAGTTGACGGTTCATCGAGTAGAACTACTTTGGGAGCACCGACCATTGCCATAGCATAGCTAAGTTTACGCCTAGTACCGCCGGAACAGTGTTGGGTTTGCTTATTGGCATGCTCGTTTATGTGCAATCCCGTGAGATACGTCGATATCAATCTGTTCAAATCTTTGCCACGCACGCCCCGGATGCGGGCATACAATTCTAGATGTTCGCGAACAGTAACGTTCTTCCACAGAGCGTCGTGTTGGGGACAATAGCCCAATGTCTTGAATGCGTCGTCTTGATTGATAGTGATACTGTGACCTGCAACACGCACCGTGCCACGCGTTGGAGCCGTTTCTCCTGTCATGATTTTCATGGTGGTCGTTTTGCCGGCACCATTGTGTCCGAGCAAAACCAGTACCTCCCCAGC]
consensusID : consensus_2900#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence
[CAACGCCATCGAATCGATTGTCAATGCAGTTGCTGATAACCGGTGCAATGTGGTCCGTACTTTGGTCGAGCTGCAGCTGCTCCTGGCTGCTGCTCGGTTGGCTTTCGATTGGTGTCTCACTGTACACATTTTCTATGTGCTTCAACTTAATCTCAAGCGTGTAGCCAGCGCCGTATAGATTTTTCAGGTGTTGCGTCGACCCGAGACATCTTAGCTCTCCTTTGACCATGATTCCTACGCGCGAACATAGAGCGTCAGCTTCTTCCATCGAATGTGTCGTCAGCATCGCGCAACGTTTTCCGTGGAAGCTGGCAAGGATAGTGTCCCACAGGAATCTTTTCGATTTCGGATCCATCCCAGTTGACGGTTCATCGAGTAGAACTACTTTGGGAGCACCGACCATTGCCATAGCATAGCTAAGTTTACGCCTAGTACCGCCGGAACAGTGTTGGGTTTGCTTATTGGCATGCTCGTTTATGTGCAATCCCGTGAGATACGTCGATATCAATCTGTTCAAATCTTTGCCACGCACGCCCCGGATGCGGGCATACAATTCTAGATGTTCGCGAACAGTAACGTTCTTCCACAGAGCGTCGTGTTGGGGACCGGACGCGTGGGCGG]
[-] EMBL BM640396 [CAACGCCATCGAATCGATTGTCAATGCAGTTGCTGATAACCGGTGCAATGTGGTCCGTACTTTGGTCGAGCTGCAGCTGCTCCTGGCTGCTGCTCGGTTGGCTTTCGATTGGTGTCTCACTGTACACATTTTCTATGTGCTTCAACTTAATCTCAAGCGTGTAGCCAGCGCCGTATAGATTTTTCAGGTGTTGCGTCGACCCGAGACATCTTAGCTCTCCTTTGACCATGATTCCTACGCGCGAACATAGAGCGTCAGCTTCTTCCATCGAATGTGTCGTCAGCATCGCGCAACGTTTTCCGTGGAAGCTGGCAAGGATAGTGTCCCACAGGAATCTTTTCGATTTCGGATCCATCCCAGTTGACGGTTCATCGAGTAGAACTACTTTGGGAGCACCGACCATTGCCATAGCATAGCTAAGTTTACGCCTAGTACCGCCGGAACAGTGTTGGGTTTGCTTATTGGCATGCTCGTTTATGTGCAATCCCGTGAGATACGTCGATATCAATCTGTTCAAATCTTTGCCACGCACGCCCCGGATGCGGGCATACAATTCTAGATGTTCGCGAACAGTAACGTTCTTCCACAGAGCGTCGTGTTGGGGACCGGACGCGTGGGCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2900#0 -----------------------------------------------------------C 1
consensus_2900#1 CAACGCCATCGAATCGATTGTCAATGCAGTTGCTGATAACCGGTGCAATGTGGTCCGTAC 60
*
consensus_2900#0 TTCAACTTAATCTCAA--GCGTGTAGCCAGCGCCGTATAGATTTTTCA--GGTGTTGCGT 57
consensus_2900#1 TTTGGTCGAGCTGCAGCTGCTCCTGGCTGCTGCTCGGTTGGCTTTCGATTGGTGTCTCAC 120
** * ** ** * ** ** * * *** * ***** *
consensus_2900#0 CGACCCGAGACATCTGGAAATATAAACAAAGCGTCATGCATAC--CTCGCCTCACGCGCA 115
consensus_2900#1 TG-TACACATTTTCTATGTGCTTCAACTTAATCTCAAGCGTGTAGCCAGCGCCGTATAGA 179
* * *** * *** * *** ** * * ** * *
consensus_2900#0 AACAGTAGGTCGCATTTCAAACC----TACCTTAGCTCTCCTTTGACCATGATTCCTACG 171
consensus_2900#1 TTTTTCAGGTGTTGCGTCGACCCGAGACATCTTAGCTCTCCTTTGACCATGATTCCTACG 239
**** ** * ** * ******************************
consensus_2900#0 CGCGAACATAGAGCGTCAGCT-CTTCCATCGAATGTGTCGTCAGCATCGCGCAACGTTTT 230
consensus_2900#1 CGCGAACATAGAGCGTCAGCTTCTTCCATCGAATGTGTCGTCAGCATCGCGCAACGTTTT 299
********************* **************************************
consensus_2900#0 CCGTGGAAGCTGGCAAGGATAGTGTCCCACAGGAATCTTTTCGATTTCGGATCCATCCCA 290
consensus_2900#1 CCGTGGAAGCTGGCAAGGATAGTGTCCCACAGGAATCTTTTCGATTTCGGATCCATCCCA 359
************************************************************
consensus_2900#0 GTTGACGGTTCATCGAGTAGAACTACTTTGGGAGCACCGACCATTGCCATAGCATAGCTA 350
consensus_2900#1 GTTGACGGTTCATCGAGTAGAACTACTTTGGGAGCACCGACCATTGCCATAGCATAGCTA 419
************************************************************
consensus_2900#0 AGTTTACGCCTAGTACCGCCGGAACAGTGTTGGGTTTGCTTATTGGCATGCTCGTTTATG 410
consensus_2900#1 AGTTTACGCCTAGTACCGCCGGAACAGTGTTGGGTTTGCTTATTGGCATGCTCGTTTATG 479
************************************************************
consensus_2900#0 TGCAATCCCGTGAGATACGTCGATATCAATCTGTTCAAATCTTTGCCACGCACGCCCCGG 470
consensus_2900#1 TGCAATCCCGTGAGATACGTCGATATCAATCTGTTCAAATCTTTGCCACGCACGCCCCGG 539
************************************************************
consensus_2900#0 ATGCGGGCATACAATTCTAGATGTTCGCGAACAGTAACGTTCTTCCACAGAGCGTCGTGT 530
consensus_2900#1 ATGCGGGCATACAATTCTAGATGTTCGCGAACAGTAACGTTCTTCCACAGAGCGTCGTGT 599
************************************************************
consensus_2900#0 TGGGGACAATAGCCCAATGTCTTGAATGCGTCGTCTTGATTGATAGTGATACTGTGACCT 590
consensus_2900#1 TGGGGAC--CGGACGCGTGGGCGG------------------------------------ 621
******* * * ** *
consensus_2900#0 GCAACACGCACCGTGCCACGCGTTGGAGCCGTTTCTCCTGTCATGATTTTCATGGTGGTC 650
consensus_2900#1 ------------------------------------------------------------
consensus_2900#0 GTTTTGCCGGCACCATTGTGTCCGAGCAAAACCAGTACCTCCCCAGC 697
consensus_2900#1 -----------------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||