These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2901#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 738 fasta sequence [CTACTGTTGTTATAAACATTAAGCTTGCTGCTTCCTTTTTATTAGCCTGTACCGCGCAAGGCCAAAGGCCATTATAATGCAACATGTAGTGTAAGAAATATACAAAACAAAAAGAACATTATAAACTAGTTGGGCAACGTTATAGCTCAGCACACATTTGAACAGTGCAAACTTATTGCACATACTTTTCGGTTTCTATAAACATACTTTGCAAAATGTAATCCCAGTTATTGTGGAAAACTACATCACATATAAGCCCGTATCCTTAGGACACATCCGTCACAATCGTTGTGAGTCAGTTCTAAAGGTTCTTAGTAATTTTGCAAAAAAAAAAAAACTATATCTATCCAACAATTACTTCAGTAAACCAGTAAACCAAGAAGAAGATGTAATGTTGAACGGGATTAAAGCGTGGCCGACACATACACAACAAACCTAGACGTATTAGAATGCAGTTGCCAAAACGAGAATGAGTTCCAGACAGGGCAGGGCAGTATGAAATACTGATAAAGCTACTAAACAGCGAAACAATGAAATACGATACCGTTCACAGCAACAGTGCCTACAAGTTTTATATTAGCTACGCGTGTGAGCACTCGGGAAGCTCAGGAACCATACAAACAACCTCAACTGAAAAGCATAGGACTGGTACGAAGTAACTACACATGTTTCGGCATTTACCGAACAAACTGTCACAATCGAAAGACTGGNTGGATTCTGTCTACNGCGTGAGAATTA] [+] EMBL BX624856 [CTACTGTTGTTATAAACATTAAGCTTGCTGCTTCCTTTTTATTAGCCTGTACCGCGCAAGGCCAAAGGCCATTATAATGCAACATGTAGTGTAAGAAATATACAAAACAAAAAGAACATTATAAACTAGTTGGGCAACGTTATAGCTCAGCACACATTTGAACAGTGCAAACTTATTGCACATACTTTTCGGTTTCTATAAACATACTTTGCAAAATGTAATCCCAGTTATTGTGGAAAACTACATCACATATAAGCCCGTATCCTTAGGACACATCCGTCACAATCGTTGTGAGTCAGTTCTAAAGGTTCTTAGTAATTTTGCAAAAAAAAAAAAACTATATCTATCCAACAATTACTTCAGTAAACCAGTAAACCAAGAAGAAGATGTAATGTTGAACGGGATTAAAGCGTGGCCGACACATACACAACAAACCTAGACGTATTAGAATGCAGTTGCCAAAACGAGAATGAGTTCCAGACAGGGCAGGGCAGTATGAAATACTGATAAAGCTACTAAACAGCGAAACAATGAAATACGATACCGTTCACAGCAACAGTGCCTACAAGTTTTATATTAGCTACGCGTGTGAGCACTCGGGAAGCTCAGGAACCATACAAACAACCTCAACTGAAAAGCATAGGACTGGTACGAAGTAACTACACATGTTTCGGCATTTACCGAACAAACTGTCACAATCGAAAGACTGGNTGGATTCTGTCTACNGCGTGAGAATTA] consensusID : consensus_2901#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence [AATCGCCCGAGGGTAACAAGAAGAAGATGTATGTTGAACGGGATTAAGCGTGGCCGACACATACACAACAAACCTAGACGTATTAGAATGCAGTTGCCAAAACGAGAATGAGTTCCAGACAGGGCAGGGCAGTATGAAATACTGATAAAGCTACTAAACAGCGAAACAATGAAATACGATACCGTTCACAGCAACAGTGCCTATAAGTNTTATATTAGCTACGCGTGTGAGCACTCGGGAAGCTCAGGAACCATACAAACAACCTCAACTGAAAAGCATAGGACTGGTACGAAGTAACTACACATGTTTCGGCATTTACCGAACAAACTGTCACAATCGAAAGACTGGTTGGATTCTGTCTACGGCGTGAGAATTATACATCTTCCAAACTTGTTTTAATGAATTGCCAGAAATTGTAGGATGCGACAAAGTGATGTTAAAA] [+] EMBL AL932504 [AATCGCCCGAGGGTAACAAGAAGAAGATGTATGTTGAACGGGATTAAGCGTGGCCGACACATACACAACAAACCTAGACGTATTAGAATGCAGTTGCCAAAACGAGAATGAGTTCCAGACAGGGCAGGGCAGTATGAAATACTGATAAAGCTACTAAACAGCGAAACAATGAAATACGATACCGTTCACAGCAACAGTGCCTATAAGTNTTATATTAGCTACGCGTGTGAGCACTCGGGAAGCTCAGGAACCATACAAACAACCTCAACTGAAAAGCATAGGACTGGTACGAAGTAACTACACATGTTTCGGCATTTACCGAACAAACTGTCACAATCGAAAGACTGGTTGGATTCTGTCTACGGCGTGAGAATTATACATCTTCCAAACTTGTTTTAATGAATTGCCAGAAATTGTAGGATGCGACAAAGTGATGTTAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2901#0 CTACTGTTGTTATAAACATTAAGCTTGCTGCTTCCTTTTTATTAGCCTGTACCGCGCAAG 60 consensus_2901#1 ------------------------------------------------------------ consensus_2901#0 GCCAAAGGCCATTATAATGCAACATGTAGTGTAAGAAATATACAAAACAAAAAGAACATT 120 consensus_2901#1 ------------------------------------------------------------ consensus_2901#0 ATAAACTAGTTGGGCAACGTTATAGCTCAGCACACATTTGAACAGTGCAAACTTATTGCA 180 consensus_2901#1 ------------------------------------------------------------ consensus_2901#0 CATACTTTTCGGTTTCTATAAACATACTTTGCAAAATGTAATCCCAGTTATTGTGGAAAA 240 consensus_2901#1 ------------------------------------------------------------ consensus_2901#0 CTACATCACATATAAGCCCGTATCCTTAGGACACATCCGTCACAATCGTTGTGAGTCAGT 300 consensus_2901#1 ------------------------------------------------------------ consensus_2901#0 TCTAAAGGTTCTTAGTAATTTTGCAAAAAAAAAAAAACTATATCTATCCAACAATTACTT 360 consensus_2901#1 ------------------------------------------------------------ consensus_2901#0 CAGTAAACC-AGTAAACCAAGAAGAAGATGTAATGTTGAACGGGATTAAAGCGTGGCCGA 419 consensus_2901#1 -AATCGCCCGAGGGTAACAAGAAGAAGATGTA-TGTTGAACGGGATTAA-GCGTGGCCGA 57 * * ** ** * *************** **************** ********** consensus_2901#0 CACATACACAACAAACCTAGACGTATTAGAATGCAGTTGCCAAAACGAGAATGAGTTCCA 479 consensus_2901#1 CACATACACAACAAACCTAGACGTATTAGAATGCAGTTGCCAAAACGAGAATGAGTTCCA 117 ************************************************************ consensus_2901#0 GACAGGGCAGGGCAGTATGAAATACTGATAAAGCTACTAAACAGCGAAACAATGAAATAC 539 consensus_2901#1 GACAGGGCAGGGCAGTATGAAATACTGATAAAGCTACTAAACAGCGAAACAATGAAATAC 177 ************************************************************ consensus_2901#0 GATACCGTTCACAGCAACAGTGCCTACAAGTTTTATATTAGCTACGCGTGTGAGCACTCG 599 consensus_2901#1 GATACCGTTCACAGCAACAGTGCCTATAAGTNTTATATTAGCTACGCGTGTGAGCACTCG 237 ************************** **** **************************** consensus_2901#0 GGAAGCTCAGGAACCATACAAACAACCTCAACTGAAAAGCATAGGACTGGTACGAAGTAA 659 consensus_2901#1 GGAAGCTCAGGAACCATACAAACAACCTCAACTGAAAAGCATAGGACTGGTACGAAGTAA 297 ************************************************************ consensus_2901#0 CTACACATGTTTCGGCATTTACCGAACAAACTGTCACAATCGAAAGACTGGNTGGATTCT 719 consensus_2901#1 CTACACATGTTTCGGCATTTACCGAACAAACTGTCACAATCGAAAGACTGGTTGGATTCT 357 *************************************************** ******** consensus_2901#0 GTCTACNGCGTGAGAATTA----------------------------------------- 738 consensus_2901#1 GTCTACGGCGTGAGAATTATACATCTTCCAAACTTGTTTTAATGAATTGCCAGAAATTGT 417 ****** ************ consensus_2901#0 ------------------------- consensus_2901#1 AGGATGCGACAAAGTGATGTTAAAA 442 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||