cluster # 2902

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 2902 cluster # 2902 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2902#0 length = 342 sequences # 1

consensus_2902#1 length = 272 sequences # 1

consensusID : consensus_2902#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 342
fasta sequence

                              [TTTCATTTCAAGGGGTATCTTAAATTTATTCACTTTATAATGTCCTAAAATTTACACACTATAATGTTTAGGTGCCGGCTCACACCTTAAATGAAATAAGTGGGGACTTCGCCTCATACTCTGCTACCTATCTAGCTGGGTTCGATCGTTCGTTATCGAGTTTTTCCTTTCTGTAGGTCAATGTTATGTCTCACTGTATGTTTATTCGCCCTTAGATATGAAAAACAGAAATTAGAAACGTTTGAATGGGTACAAAAACCCAAACTATACCACAACAGTTCGGATGCCCTCCCACAAAACAGGAGAAAGCGTTCCAAATTATTGACGAGCGATATTTAATGA]

[+] EMBL BX611601             [TTTCATTTCAAGGGGTATCTTAAATTTATTCACTTTATAATGTCCTAAAATTTACACACTATAATGTTTAGGTGCCGGCTCACACCTTAAATGAAATAAGTGGGGACTTCGCCTCATACTCTGCTACCTATCTAGCTGGGTTCGATCGTTCGTTATCGAGTTTTTCCTTTCTGTAGGTCAATGTTATGTCTCACTGTATGTTTATTCGCCCTTAGATATGAAAAACAGAAATTAGAAACGTTTGAATGGGTACAAAAACCCAAACTATACCACAACAGTTCGGATGCCCTCCCACAAAACAGGAGAAAGCGTTCCAAATTATTGACGAGCGATATTTAATGA]




>consensus_2902#0
TTTCATTTCAAGGGGTATCTTAAATTTATTCACTTTATAATGTCCTAAAATTTACACACT
ATAATGTTTAGGTGCCGGCTCACACCTTAAATGAAATAAGTGGGGACTTCGCCTCATACT
CTGCTACCTATCTAGCTGGGTTCGATCGTTCGTTATCGAGTTTTTCCTTTCTGTAGGTCA
ATGTTATGTCTCACTGTATGTTTATTCGCCCTTAGATATGAAAAACAGAAATTAGAAACG
TTTGAATGGGTACAAAAACCCAAACTATACCACAACAGTTCGGATGCCCTCCCACAAAAC
AGGAGAAAGCGTTCCAAATTATTGACGAGCGATATTTAATGA

consensusID : consensus_2902#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 272
fasta sequence

                              [CAAGGGGTATTTTAAATTTATTCACTGTATAATGTCCTAAAATTTACACACTATAATGTTTAGGTGACGGCTCACACCTTAAATGAAATAAGTGGGGACTACGCCTCATACTCTGCTACCTATCTAGCTGGGTTCGATCGTTCGTTCCTTTCTGTAGGTCAATGTTATGTCTCGCTGTATGTTTATTCGCCCTTAGATATGAAAAACAGAAATTAGAAACGTTTGCATGGGTACAAAAACCCAAACGGACGCGTGGGCGGACGCGTGGGCGG]

[-] EMBL BM640406             [CAAGGGGTATTTTAAATTTATTCACTGTATAATGTCCTAAAATTTACACACTATAATGTTTAGGTGACGGCTCACACCTTAAATGAAATAAGTGGGGACTACGCCTCATACTCTGCTACCTATCTAGCTGGGTTCGATCGTTCGTTCCTTTCTGTAGGTCAATGTTATGTCTCGCTGTATGTTTATTCGCCCTTAGATATGAAAAACAGAAATTAGAAACGTTTGCATGGGTACAAAAACCCAAACGGACGCGTGGGCGGACGCGTGGGCGG]




>consensus_2902#1
CAAGGGGTATTTTAAATTTATTCACTGTATAATGTCCTAAAATTTACACACTATAATGTT
TAGGTGACGGCTCACACCTTAAATGAAATAAGTGGGGACTACGCCTCATACTCTGCTACC
TATCTAGCTGGGTTCGATCGTTCGTTCCTTTCTGTAGGTCAATGTTATGTCTCGCTGTAT
GTTTATTCGCCCTTAGATATGAAAAACAGAAATTAGAAACGTTTGCATGGGTACAAAAAC
CCAAACGGACGCGTGGGCGGACGCGTGGGCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2902#0      TTTCATTTCAAGGGGTATCTTAAATTTATTCACTTTATAATGTCCTAAAATTTACACACT 60
consensus_2902#1      --------CAAGGGGTATTTTAAATTTATTCACTGTATAATGTCCTAAAATTTACACACT 52
                              ********** *************** *************************

consensus_2902#0      ATAATGTTTAGGTGCCGGCTCACACCTTAAATGAAATAAGTGGGGACTTCGCCTCATACT 120
consensus_2902#1      ATAATGTTTAGGTGACGGCTCACACCTTAAATGAAATAAGTGGGGACTACGCCTCATACT 112
                      ************** ********************************* ***********

consensus_2902#0      CTGCTACCTATCTAGCTGGGTTCGATCGTTCGTTATCGAGTTTTTCCTTTCTGTAGGTCA 180
consensus_2902#1      CTGCTACCTATCTAGCTGGGTTCGATCGTTCGTT-----------CCTTTCTGTAGGTCA 161
                      **********************************           ***************

consensus_2902#0      ATGTTATGTCTCACTGTATGTTTATTCGCCCTTAGATATGAAAAACAGAAATTAGAAACG 240
consensus_2902#1      ATGTTATGTCTCGCTGTATGTTTATTCGCCCTTAGATATGAAAAACAGAAATTAGAAACG 221
                      ************ ***********************************************

consensus_2902#0      TTTGAATGGGTACAAAAACCCAAACTATACCACAACAGTTCGGATGCCCTCCCACAAAAC 300
consensus_2902#1      TTTGCATGGGTACAAAAACCCAAACGGACGCGTGGGCGGACGCGTGGGCGG--------- 272
                      **** ********************     *      *  **  **  *           

consensus_2902#0      AGGAGAAAGCGTTCCAAATTATTGACGAGCGATATTTAATGA 342
consensus_2902#1      ------------------------------------------