cluster # 2919

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Anopheles gambiae
cluster # 2919 cluster # 2919 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2919#0 length = 594 sequences # 1

consensus_2919#1 length = 118 sequences # 1

consensusID : consensus_2919#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 594
fasta sequence

                              [CTGAAGATGTATCTGTACGACCTGGACGTGCTGGGGCATTTCGAAAGCCTGCGCAACTACTTCCTCCTGATGGACGGTGAGTTTTCCACCCACATCTGTGACAATCTGTTCCAGCGGCTCGAAACCGTACGCACGCCGGAGGAGCTGCTGAACTACCAAACGCTTCACTCCATCCTGGATGGGGCGCTGTACTCGAGCAATGCCGGCACGGACCGTAATGCCGACCGGCTGTCCTTCATCGTGTGCCAGGTGCCGGAAAAGTTTGACCTCTACTCGCCGAACGTGTTCAGCATGCTGAACCTTAGCTACCGGGTCGAGTGGCCCCTCAATCTAATCTTCTCGAACGAAACGATCGAACAGTACACGAACGTGTTCAAATACCTGGTGAAGGTGCGCCGCGTTAGCTACGTGCTGGAGGATTCCTTCCAGCTGCTGAAGGAAGCGAGCAGGCGGCTGGGGAAACCGTTGCTCCATTCGCCCCAGTACGCCCGGGTGCAGCTGATCCGCCACAAGCTGTCCCATCTGGTGAACGCGCTCAAGAACTACATCACGAGCAGTGCGCTGCACGCGTCCTGGGAAACGTTCCGGGAGGAT]

[+] EMBL BX618368             [CTGAAGATGTATCTGTACGACCTGGACGTGCTGGGGCATTTCGAAAGCCTGCGCAACTACTTCCTCCTGATGGACGGTGAGTTTTCCACCCACATCTGTGACAATCTGTTCCAGCGGCTCGAAACCGTACGCACGCCGGAGGAGCTGCTGAACTACCAAACGCTTCACTCCATCCTGGATGGGGCGCTGTACTCGAGCAATGCCGGCACGGACCGTAATGCCGACCGGCTGTCCTTCATCGTGTGCCAGGTGCCGGAAAAGTTTGACCTCTACTCGCCGAACGTGTTCAGCATGCTGAACCTTAGCTACCGGGTCGAGTGGCCCCTCAATCTAATCTTCTCGAACGAAACGATCGAACAGTACACGAACGTGTTCAAATACCTGGTGAAGGTGCGCCGCGTTAGCTACGTGCTGGAGGATTCCTTCCAGCTGCTGAAGGAAGCGAGCAGGCGGCTGGGGAAACCGTTGCTCCATTCGCCCCAGTACGCCCGGGTGCAGCTGATCCGCCACAAGCTGTCCCATCTGGTGAACGCGCTCAAGAACTACATCACGAGCAGTGCGCTGCACGCGTCCTGGGAAACGTTCCGGGAGGAT]




>consensus_2919#0
CTGAAGATGTATCTGTACGACCTGGACGTGCTGGGGCATTTCGAAAGCCTGCGCAACTAC
TTCCTCCTGATGGACGGTGAGTTTTCCACCCACATCTGTGACAATCTGTTCCAGCGGCTC
GAAACCGTACGCACGCCGGAGGAGCTGCTGAACTACCAAACGCTTCACTCCATCCTGGAT
GGGGCGCTGTACTCGAGCAATGCCGGCACGGACCGTAATGCCGACCGGCTGTCCTTCATC
GTGTGCCAGGTGCCGGAAAAGTTTGACCTCTACTCGCCGAACGTGTTCAGCATGCTGAAC
CTTAGCTACCGGGTCGAGTGGCCCCTCAATCTAATCTTCTCGAACGAAACGATCGAACAG
TACACGAACGTGTTCAAATACCTGGTGAAGGTGCGCCGCGTTAGCTACGTGCTGGAGGAT
TCCTTCCAGCTGCTGAAGGAAGCGAGCAGGCGGCTGGGGAAACCGTTGCTCCATTCGCCC
CAGTACGCCCGGGTGCAGCTGATCCGCCACAAGCTGTCCCATCTGGTGAACGCGCTCAAG
AACTACATCACGAGCAGTGCGCTGCACGCGTCCTGGGAAACGTTCCGGGAGGAT

consensusID : consensus_2919#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 118
fasta sequence

                              [GAAGGAAGCGAGCAGGCGGCGGGGGAAACCGTAGCTCCATTCGCCCCAGAACGCCCGGGGGCAGCAGAACCGCCACAAGCGGCCCCACCGGGGGAACGCGCCCAAGAACAACATCACG]

[+] EMBL BX609925             [GAAGGAAGCGAGCAGGCGGCGGGGGAAACCGTAGCTCCATTCGCCCCAGAACGCCCGGGGGCAGCAGAACCGCCACAAGCGGCCCCACCGGGGGAACGCGCCCAAGAACAACATCACG]




>consensus_2919#1
GAAGGAAGCGAGCAGGCGGCGGGGGAAACCGTAGCTCCATTCGCCCCAGAACGCCCGGGG
GCAGCAGAACCGCCACAAGCGGCCCCACCGGGGGAACGCGCCCAAGAACAACATCACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2919#0      CTGAAGATGTATCTGTACGACCTGGACGTGCTGGGGCATTTCGAAAGCCTGCGCAACTAC 60
consensus_2919#1      ------------------------------------------------------------
                                                                                  

consensus_2919#0      TTCCTCCTGATGGACGGTGAGTTTTCCACCCACATCTGTGACAATCTGTTCCAGCGGCTC 120
consensus_2919#1      ------------------------------------------------------------
                                                                                  

consensus_2919#0      GAAACCGTACGCACGCCGGAGGAGCTGCTGAACTACCAAACGCTTCACTCCATCCTGGAT 180
consensus_2919#1      ------------------------------------------------------------
                                                                                  

consensus_2919#0      GGGGCGCTGTACTCGAGCAATGCCGGCACGGACCGTAATGCCGACCGGCTGTCCTTCATC 240
consensus_2919#1      ------------------------------------------------------------
                                                                                  

consensus_2919#0      GTGTGCCAGGTGCCGGAAAAGTTTGACCTCTACTCGCCGAACGTGTTCAGCATGCTGAAC 300
consensus_2919#1      ------------------------------------------------------------
                                                                                  

consensus_2919#0      CTTAGCTACCGGGTCGAGTGGCCCCTCAATCTAATCTTCTCGAACGAAACGATCGAACAG 360
consensus_2919#1      ------------------------------------------------------------
                                                                                  

consensus_2919#0      TACACGAACGTGTTCAAATACCTGGTGAAGGTGCGCCGCGTTAGCTACGTGCTGGAGGAT 420
consensus_2919#1      ------------------------------------------------------------
                                                                                  

consensus_2919#0      TCCTTCCAGCTGCTGAAGGAAGCGAGCAGGCGGCTGGGGAAACCGTTGCTCCATTCGCCC 480
consensus_2919#1      --------------GAAGGAAGCGAGCAGGCGGCGGGGGAAACCGTAGCTCCATTCGCCC 46
                                    ******************** *********** *************

consensus_2919#0      CAGTACGCCCGGGTGCAGCTGATCCGCCACAAGCTGTCCCATCTGGTGAACGCGCTCAAG 540
consensus_2919#1      CAGAACGCCCGGGGGCAGCAGAACCGCCACAAGCGGCCCCACCGGGGGAACGCGCCCAAG 106
                      *** ********* ***** ** *********** * **** * ** ******** ****

consensus_2919#0      AACTACATCACGAGCAGTGCGCTGCACGCGTCCTGGGAAACGTTCCGGGAGGAT 594
consensus_2919#1      AACAACATCACG------------------------------------------ 118
                      *** ********