cluster # 2923

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Anopheles gambiae
cluster # 2923 cluster # 2923 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2923#0 length = 648 sequences # 1

consensus_2923#1 length = 175 sequences # 1

consensusID : consensus_2923#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 648
fasta sequence

                              [CCGAGCGGATTGGCAAGCTTCTACTGTAATTGGCAAGCGGATTGGCAAGCTTCTACTGTAATGCTTTTCAATCCGCTTGCCAATTACGTTTGTAAGAACTCTCTTAAGAAGTTGTGAAACTGCAACCCAAAACATGAAACAGCAACACTTCTTGCTTCAATGCGTATGGCAATTGTGTAGTTATTAGCGTTAAGTGCGTTGAAAAGCATTAGAAAAGTAAGAATTGCATGGCCAGCTGCCACTGATATTCCATAACGATTCGTCACTCAAAAGCTCATTACCGATATGTCAGGAAGGCAAATAATAAGACAGGCAAAGCAAATCACATCCACCAGCGCCGTCCGTTTTGTTTTTAGCCATTCTCAAATGCGGTCCTATTTGACTGCCCGGTTGACGGGGCGTGGGCACCGACGATAATCCGACGCTCTGGCAATCGCATGTCTCCGATTGCACTAATTGATTTTGCTGATAACGAAGCTTACAGCCGGATACCAGGTGTAAGGGACGATTTGTTTGTGTTACAATGATTTGCAATTGGTTAGCAAGAGGGCAAAAAACAACACACACGCAACGGGCTGTGTTGGCGGTGCGGTACCGGTCGATTCAATTGCACTTTAATAGAGCCACCAAGCGTCTCCATGCATCCAG]

[+] EMBL BM657427             [CCGAGCGGATTGGCAAGCTTCTACTGTAATTGGCAAGCGGATTGGCAAGCTTCTACTGTAATGCTTTTCAATCCGCTTGCCAATTACGTTTGTAAGAACTCTCTTAAGAAGTTGTGAAACTGCAACCCAAAACATGAAACAGCAACACTTCTTGCTTCAATGCGTATGGCAATTGTGTAGTTATTAGCGTTAAGTGCGTTGAAAAGCATTAGAAAAGTAAGAATTGCATGGCCAGCTGCCACTGATATTCCATAACGATTCGTCACTCAAAAGCTCATTACCGATATGTCAGGAAGGCAAATAATAAGACAGGCAAAGCAAATCACATCCACCAGCGCCGTCCGTTTTGTTTTTAGCCATTCTCAAATGCGGTCCTATTTGACTGCCCGGTTGACGGGGCGTGGGCACCGACGATAATCCGACGCTCTGGCAATCGCATGTCTCCGATTGCACTAATTGATTTTGCTGATAACGAAGCTTACAGCCGGATACCAGGTGTAAGGGACGATTTGTTTGTGTTACAATGATTTGCAATTGGTTAGCAAGAGGGCAAAAAACAACACACACGCAACGGGCTGTGTTGGCGGTGCGGTACCGGTCGATTCAATTGCACTTTAATAGAGCCACCAAGCGTCTCCATGCATCCAG]




>consensus_2923#0
CCGAGCGGATTGGCAAGCTTCTACTGTAATTGGCAAGCGGATTGGCAAGCTTCTACTGTA
ATGCTTTTCAATCCGCTTGCCAATTACGTTTGTAAGAACTCTCTTAAGAAGTTGTGAAAC
TGCAACCCAAAACATGAAACAGCAACACTTCTTGCTTCAATGCGTATGGCAATTGTGTAG
TTATTAGCGTTAAGTGCGTTGAAAAGCATTAGAAAAGTAAGAATTGCATGGCCAGCTGCC
ACTGATATTCCATAACGATTCGTCACTCAAAAGCTCATTACCGATATGTCAGGAAGGCAA
ATAATAAGACAGGCAAAGCAAATCACATCCACCAGCGCCGTCCGTTTTGTTTTTAGCCAT
TCTCAAATGCGGTCCTATTTGACTGCCCGGTTGACGGGGCGTGGGCACCGACGATAATCC
GACGCTCTGGCAATCGCATGTCTCCGATTGCACTAATTGATTTTGCTGATAACGAAGCTT
ACAGCCGGATACCAGGTGTAAGGGACGATTTGTTTGTGTTACAATGATTTGCAATTGGTT
AGCAAGAGGGCAAAAAACAACACACACGCAACGGGCTGTGTTGGCGGTGCGGTACCGGTC
GATTCAATTGCACTTTAATAGAGCCACCAAGCGTCTCCATGCATCCAG

consensusID : consensus_2923#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 175
fasta sequence

                              [GCACACGATTTAAAGTGAAAAGCATTACAGTAGAAGCTTGCCAATCCGCTTGCCAATTACGTTTGTAAGAACTCTCTTAAGAAGTTGTGAAACTGCAACCCAAAACATGAAACAGCAACACTTCTTGCTTCAATGCGTATGGCAATTGTGTAGTTATTAGCGTTAAGTGCGTTGA]

[+] EMBL BX617980             [GCACACGATTTAAAGTGAAAAGCATTACAGTAGAAGCTTGCCAATCCGCTTGCCAATTACGTTTGTAAGAACTCTCTTAAGAAGTTGTGAAACTGCAACCCAAAACATGAAACAGCAACACTTCTTGCTTCAATGCGTATGGCAATTGTGTAGTTATTAGCGTTAAGTGCGTTGA]




>consensus_2923#1
GCACACGATTTAAAGTGAAAAGCATTACAGTAGAAGCTTGCCAATCCGCTTGCCAATTAC
GTTTGTAAGAACTCTCTTAAGAAGTTGTGAAACTGCAACCCAAAACATGAAACAGCAACA
CTTCTTGCTTCAATGCGTATGGCAATTGTGTAGTTATTAGCGTTAAGTGCGTTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2923#0      CCGAGCGGATTGGCAAGCTTCTACTGTAATTGGCAAGCGGATTGGCAAGCTTCTACTGTA 60
consensus_2923#1      -------------------------GCACACGATT--TAAAGTGAAAAGCAT-TACAGTA 32
                                               * *   *        * **  **** * *** ***

consensus_2923#0      -ATGCTTTTCAATCCGCTTGCCAATTACGTTTGTAAGAACTCTCTTAAGAAGTTGTGAAA 119
consensus_2923#1      GAAGCTTGCCAATCCGCTTGCCAATTACGTTTGTAAGAACTCTCTTAAGAAGTTGTGAAA 92
                       * ****  ***************************************************

consensus_2923#0      CTGCAACCCAAAACATGAAACAGCAACACTTCTTGCTTCAATGCGTATGGCAATTGTGTA 179
consensus_2923#1      CTGCAACCCAAAACATGAAACAGCAACACTTCTTGCTTCAATGCGTATGGCAATTGTGTA 152
                      ************************************************************

consensus_2923#0      GTTATTAGCGTTAAGTGCGTTGAAAAGCATTAGAAAAGTAAGAATTGCATGGCCAGCTGC 239
consensus_2923#1      GTTATTAGCGTTAAGTGCGTTGA------------------------------------- 175
                      ***********************                                     

consensus_2923#0      CACTGATATTCCATAACGATTCGTCACTCAAAAGCTCATTACCGATATGTCAGGAAGGCA 299
consensus_2923#1      ------------------------------------------------------------
                                                                                  

consensus_2923#0      AATAATAAGACAGGCAAAGCAAATCACATCCACCAGCGCCGTCCGTTTTGTTTTTAGCCA 359
consensus_2923#1      ------------------------------------------------------------
                                                                                  

consensus_2923#0      TTCTCAAATGCGGTCCTATTTGACTGCCCGGTTGACGGGGCGTGGGCACCGACGATAATC 419
consensus_2923#1      ------------------------------------------------------------
                                                                                  

consensus_2923#0      CGACGCTCTGGCAATCGCATGTCTCCGATTGCACTAATTGATTTTGCTGATAACGAAGCT 479
consensus_2923#1      ------------------------------------------------------------
                                                                                  

consensus_2923#0      TACAGCCGGATACCAGGTGTAAGGGACGATTTGTTTGTGTTACAATGATTTGCAATTGGT 539
consensus_2923#1      ------------------------------------------------------------
                                                                                  

consensus_2923#0      TAGCAAGAGGGCAAAAAACAACACACACGCAACGGGCTGTGTTGGCGGTGCGGTACCGGT 599
consensus_2923#1      ------------------------------------------------------------
                                                                                  

consensus_2923#0      CGATTCAATTGCACTTTAATAGAGCCACCAAGCGTCTCCATGCATCCAG 648
consensus_2923#1      -------------------------------------------------