cluster # 293

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Anopheles gambiae
cluster # 293 cluster # 293 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_293#0 length = 672 sequences # 1

consensus_293#1 length = 147 sequences # 1

consensusID : consensus_293#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 672
fasta sequence

                              [CCGGACACACGAAACAATTGAACCACTCGCAGGAAGGCAGCAGCAGCCAGTTTTCTCACTGAAAGCACCCATCATCCGTGTCCCGGCGACCAATATTCGACGGGGACGTGACGTACGTGCGTGCGTGCGTGCTTGTGTGTTCCCAGTGTGCAGTGGTGTGTTGTGGAGGAGCAGTAGCCGCAGGAAACGAATCGGCCGATCCCATAGGGCTGGGTAAGAGGTAAACCGAAAATAACATGGTATGCGCCAAGGACGACGAAGCGCTCTGCACCATCAGAGACGTCCGACCAGACGCAGTACAGAAACGCTTTTCCATAACGGTCCGTCCGCACTATACCGTCGCCACGCTGTACGAGGATGTGCGGCTGCAGACGGCATTCAGTGACTTCGAGCTACATCTAATCGGTACCGAGTCGGACGTACAGATTCCTCTACACGAACGGCAACAGGAGAAGTTAGCGGATGTTGGTATAAAGTTTGGTATCGTGAACAACTTTACGATTGTTCCGCGGATGTCATTGTTGATGCCCGCGGAGGATATGTCATCCGATGACGATCTAGCGCTAGGTGCATCGGCAAGCCCGGTAGAGTCCGGTAACTACAATATCCCAGAGGCGACGGCAATTCCACCACCGATCCTGCGGCGGTTCAACAACGACATCGAAATACACA]

[+] EMBL BM626409             [CCGGACACACGAAACAATTGAACCACTCGCAGGAAGGCAGCAGCAGCCAGTTTTCTCACTGAAAGCACCCATCATCCGTGTCCCGGCGACCAATATTCGACGGGGACGTGACGTACGTGCGTGCGTGCGTGCTTGTGTGTTCCCAGTGTGCAGTGGTGTGTTGTGGAGGAGCAGTAGCCGCAGGAAACGAATCGGCCGATCCCATAGGGCTGGGTAAGAGGTAAACCGAAAATAACATGGTATGCGCCAAGGACGACGAAGCGCTCTGCACCATCAGAGACGTCCGACCAGACGCAGTACAGAAACGCTTTTCCATAACGGTCCGTCCGCACTATACCGTCGCCACGCTGTACGAGGATGTGCGGCTGCAGACGGCATTCAGTGACTTCGAGCTACATCTAATCGGTACCGAGTCGGACGTACAGATTCCTCTACACGAACGGCAACAGGAGAAGTTAGCGGATGTTGGTATAAAGTTTGGTATCGTGAACAACTTTACGATTGTTCCGCGGATGTCATTGTTGATGCCCGCGGAGGATATGTCATCCGATGACGATCTAGCGCTAGGTGCATCGGCAAGCCCGGTAGAGTCCGGTAACTACAATATCCCAGAGGCGACGGCAATTCCACCACCGATCCTGCGGCGGTTCAACAACGACATCGAAATACACA]




>consensus_293#0
CCGGACACACGAAACAATTGAACCACTCGCAGGAAGGCAGCAGCAGCCAGTTTTCTCACT
GAAAGCACCCATCATCCGTGTCCCGGCGACCAATATTCGACGGGGACGTGACGTACGTGC
GTGCGTGCGTGCTTGTGTGTTCCCAGTGTGCAGTGGTGTGTTGTGGAGGAGCAGTAGCCG
CAGGAAACGAATCGGCCGATCCCATAGGGCTGGGTAAGAGGTAAACCGAAAATAACATGG
TATGCGCCAAGGACGACGAAGCGCTCTGCACCATCAGAGACGTCCGACCAGACGCAGTAC
AGAAACGCTTTTCCATAACGGTCCGTCCGCACTATACCGTCGCCACGCTGTACGAGGATG
TGCGGCTGCAGACGGCATTCAGTGACTTCGAGCTACATCTAATCGGTACCGAGTCGGACG
TACAGATTCCTCTACACGAACGGCAACAGGAGAAGTTAGCGGATGTTGGTATAAAGTTTG
GTATCGTGAACAACTTTACGATTGTTCCGCGGATGTCATTGTTGATGCCCGCGGAGGATA
TGTCATCCGATGACGATCTAGCGCTAGGTGCATCGGCAAGCCCGGTAGAGTCCGGTAACT
ACAATATCCCAGAGGCGACGGCAATTCCACCACCGATCCTGCGGCGGTTCAACAACGACA
TCGAAATACACA

consensusID : consensus_293#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 147
fasta sequence

                              [CCGCCCACGCGTCCGGGCAGCAGCAGCCAGTTTTCTCACTGAAAGCACCCATCATCCGTGTCCCGGCGACCAATATTCGACGGGGACGTGACGTACGTGCGTGCGTGCGTGCTTGTGTGTTCCCAGTGTGCAGTGGTGTGTTGTGGA]

[+] EMBL BM634130             [CCGCCCACGCGTCCGGGCAGCAGCAGCCAGTTTTCTCACTGAAAGCACCCATCATCCGTGTCCCGGCGACCAATATTCGACGGGGACGTGACGTACGTGCGTGCGTGCGTGCTTGTGTGTTCCCAGTGTGCAGTGGTGTGTTGTGGA]




>consensus_293#1
CCGCCCACGCGTCCGGGCAGCAGCAGCCAGTTTTCTCACTGAAAGCACCCATCATCCGTG
TCCCGGCGACCAATATTCGACGGGGACGTGACGTACGTGCGTGCGTGCGTGCTTGTGTGT
TCCCAGTGTGCAGTGGTGTGTTGTGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_293#0      CCGGACACACGAAACAATTGAACCACTCGCAGGA--AGGCAGCAGCAGCCAGTTTTCTCA 58
consensus_293#1      ----------------------CCGCCCACGCGTCCGGGCAGCAGCAGCCAGTTTTCTCA 38
                                           ** * * *  *    ***********************

consensus_293#0      CTGAAAGCACCCATCATCCGTGTCCCGGCGACCAATATTCGACGGGGACGTGACGTACGT 118
consensus_293#1      CTGAAAGCACCCATCATCCGTGTCCCGGCGACCAATATTCGACGGGGACGTGACGTACGT 98
                     ************************************************************

consensus_293#0      GCGTGCGTGCGTGCTTGTGTGTTCCCAGTGTGCAGTGGTGTGTTGTGGAGGAGCAGTAGC 178
consensus_293#1      GCGTGCGTGCGTGCTTGTGTGTTCCCAGTGTGCAGTGGTGTGTTGTGGA----------- 147
                     *************************************************           

consensus_293#0      CGCAGGAAACGAATCGGCCGATCCCATAGGGCTGGGTAAGAGGTAAACCGAAAATAACAT 238
consensus_293#1      ------------------------------------------------------------
                                                                                 

consensus_293#0      GGTATGCGCCAAGGACGACGAAGCGCTCTGCACCATCAGAGACGTCCGACCAGACGCAGT 298
consensus_293#1      ------------------------------------------------------------
                                                                                 

consensus_293#0      ACAGAAACGCTTTTCCATAACGGTCCGTCCGCACTATACCGTCGCCACGCTGTACGAGGA 358
consensus_293#1      ------------------------------------------------------------
                                                                                 

consensus_293#0      TGTGCGGCTGCAGACGGCATTCAGTGACTTCGAGCTACATCTAATCGGTACCGAGTCGGA 418
consensus_293#1      ------------------------------------------------------------
                                                                                 

consensus_293#0      CGTACAGATTCCTCTACACGAACGGCAACAGGAGAAGTTAGCGGATGTTGGTATAAAGTT 478
consensus_293#1      ------------------------------------------------------------
                                                                                 

consensus_293#0      TGGTATCGTGAACAACTTTACGATTGTTCCGCGGATGTCATTGTTGATGCCCGCGGAGGA 538
consensus_293#1      ------------------------------------------------------------
                                                                                 

consensus_293#0      TATGTCATCCGATGACGATCTAGCGCTAGGTGCATCGGCAAGCCCGGTAGAGTCCGGTAA 598
consensus_293#1      ------------------------------------------------------------
                                                                                 

consensus_293#0      CTACAATATCCCAGAGGCGACGGCAATTCCACCACCGATCCTGCGGCGGTTCAACAACGA 658
consensus_293#1      ------------------------------------------------------------
                                                                                 

consensus_293#0      CATCGAAATACACA 672
consensus_293#1      --------------