cluster # 2932

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Anopheles gambiae
cluster # 2932 cluster # 2932 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2932#0 length = 702 sequences # 1

consensus_2932#1 length = 430 sequences # 1

consensusID : consensus_2932#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 702
fasta sequence

                              [CAAGAATCCCCCGAGGTTAACAGAGAAGACGACTCCTCCATTCAGCCACAATGAACTCCATCCAACTGCTCGCAGCAGCGTTCGTGCTCGGCCTGGTCGGACTGACCAGCGGCCAGCTCGTCTCGCCCGGAGTCTGCCAGGACTTTCCTGGTGCACTGTGAACTTCGATGTGCCTGCTGCTACCTTGGCCTGTGGTACGAGATCCTGCCGCTACGAGCAGGTGTTCCAGCGTGGTGGTGAGTGCNGTTACCTGCCGAGTACTACGCTGAACTGACGATGGTAGCGTGCGCGTGTTCAACTCGATGCTGGTGCCTGCCCTGGCCAGGTCCTGCCAGTACTGATGTGGGCCTGTGCCTGTGGTTGCCTTCCCCGATGAGTCGCCGCTGGAGGCCAAGCTGAACTGTTACCTTCGATGCGACTGCACTGACATCTCCTGCAACTACTGGGTGCTGGGTACGGACTACGACAGCTACGCCGTCGTGTGGGGCTGCTTCGGAGTGGGCACGACGCTGCGTGCCGAAAGTGCCTGGATCCTGTCCCGCACGCCCACGCTGACTGCCGCAGGCTGAGTGCCGAGGTTCAGCTGCTACGTCGACCTGTACCTGAGCGAGGAAGACCTTCGTCCTGACCTGTCCAGAACTTGGACTTCTGCTGCACGATCGATCCCGAAGTTACCGCTTACCCGCAGTGCCAAAACAGTAA]

[+] EMBL AL932044             [CAAGAATCCCCCGAGGTTAACAGAGAAGACGACTCCTCCATTCAGCCACAATGAACTCCATCCAACTGCTCGCAGCAGCGTTCGTGCTCGGCCTGGTCGGACTGACCAGCGGCCAGCTCGTCTCGCCCGGAGTCTGCCAGGACTTTCCTGGTGCACTGTGAACTTCGATGTGCCTGCTGCTACCTTGGCCTGTGGTACGAGATCCTGCCGCTACGAGCAGGTGTTCCAGCGTGGTGGTGAGTGCNGTTACCTGCCGAGTACTACGCTGAACTGACGATGGTAGCGTGCGCGTGTTCAACTCGATGCTGGTGCCTGCCCTGGCCAGGTCCTGCCAGTACTGATGTGGGCCTGTGCCTGTGGTTGCCTTCCCCGATGAGTCGCCGCTGGAGGCCAAGCTGAACTGTTACCTTCGATGCGACTGCACTGACATCTCCTGCAACTACTGGGTGCTGGGTACGGACTACGACAGCTACGCCGTCGTGTGGGGCTGCTTCGGAGTGGGCACGACGCTGCGTGCCGAAAGTGCCTGGATCCTGTCCCGCACGCCCACGCTGACTGCCGCAGGCTGAGTGCCGAGGTTCAGCTGCTACGTCGACCTGTACCTGAGCGAGGAAGACCTTCGTCCTGACCTGTCCAGAACTTGGACTTCTGCTGCACGATCGATCCCGAAGTTACCGCTTACCCGCAGTGCCAAAACAGTAA]




>consensus_2932#0
CAAGAATCCCCCGAGGTTAACAGAGAAGACGACTCCTCCATTCAGCCACAATGAACTCCA
TCCAACTGCTCGCAGCAGCGTTCGTGCTCGGCCTGGTCGGACTGACCAGCGGCCAGCTCG
TCTCGCCCGGAGTCTGCCAGGACTTTCCTGGTGCACTGTGAACTTCGATGTGCCTGCTGC
TACCTTGGCCTGTGGTACGAGATCCTGCCGCTACGAGCAGGTGTTCCAGCGTGGTGGTGA
GTGCNGTTACCTGCCGAGTACTACGCTGAACTGACGATGGTAGCGTGCGCGTGTTCAACT
CGATGCTGGTGCCTGCCCTGGCCAGGTCCTGCCAGTACTGATGTGGGCCTGTGCCTGTGG
TTGCCTTCCCCGATGAGTCGCCGCTGGAGGCCAAGCTGAACTGTTACCTTCGATGCGACT
GCACTGACATCTCCTGCAACTACTGGGTGCTGGGTACGGACTACGACAGCTACGCCGTCG
TGTGGGGCTGCTTCGGAGTGGGCACGACGCTGCGTGCCGAAAGTGCCTGGATCCTGTCCC
GCACGCCCACGCTGACTGCCGCAGGCTGAGTGCCGAGGTTCAGCTGCTACGTCGACCTGT
ACCTGAGCGAGGAAGACCTTCGTCCTGACCTGTCCAGAACTTGGACTTCTGCTGCACGAT
CGATCCCGAAGTTACCGCTTACCCGCAGTGCCAAAACAGTAA

consensusID : consensus_2932#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 430
fasta sequence

                              [GAATCGCCACGAGGNGTNACGTAGCAGAGAAGACGACCTCCTCCATTCAGCCACAATGAACTCCATCCAACTGCTCGCAGCAGCGTTCGTGCTCGGCCTGGTCGGACTGACCAGCGGCCAGCTCGTCTCGCCCGGAGTCTGCCAGGACTTTCCGGTGCACGTGAACTTCGATGTGCCGCGCTACCTTGGCCTGTGGTACGAGATCCGCCGCTACGAGCAGGTGTTCCAGCGTGGTGGTGAGTGCGTTACCGCCGAGTACTCGCTGAACGACGATGGTAGCGTGCGCGTGTTCAACTCGATGCTGGTGCCGGCCGGCCAGGTCCGCCAGTCTGATGTGGGCCGTGCCGTGGTTGCCTTCCCCGATGAGTCGCCGCATGGGAGGCCAAGCTGAACGTTACCTTCGATGCGACTGGCACCGAGACATCTCCGA]

[+] EMBL BX469194             [GAATCGCCACGAGGNGTNACGTAGCAGAGAAGACGACCTCCTCCATTCAGCCACAATGAACTCCATCCAACTGCTCGCAGCAGCGTTCGTGCTCGGCCTGGTCGGACTGACCAGCGGCCAGCTCGTCTCGCCCGGAGTCTGCCAGGACTTTCCGGTGCACGTGAACTTCGATGTGCCGCGCTACCTTGGCCTGTGGTACGAGATCCGCCGCTACGAGCAGGTGTTCCAGCGTGGTGGTGAGTGCGTTACCGCCGAGTACTCGCTGAACGACGATGGTAGCGTGCGCGTGTTCAACTCGATGCTGGTGCCGGCCGGCCAGGTCCGCCAGTCTGATGTGGGCCGTGCCGTGGTTGCCTTCCCCGATGAGTCGCCGCATGGGAGGCCAAGCTGAACGTTACCTTCGATGCGACTGGCACCGAGACATCTCCGA]




>consensus_2932#1
GAATCGCCACGAGGNGTNACGTAGCAGAGAAGACGACCTCCTCCATTCAGCCACAATGAA
CTCCATCCAACTGCTCGCAGCAGCGTTCGTGCTCGGCCTGGTCGGACTGACCAGCGGCCA
GCTCGTCTCGCCCGGAGTCTGCCAGGACTTTCCGGTGCACGTGAACTTCGATGTGCCGCG
CTACCTTGGCCTGTGGTACGAGATCCGCCGCTACGAGCAGGTGTTCCAGCGTGGTGGTGA
GTGCGTTACCGCCGAGTACTCGCTGAACGACGATGGTAGCGTGCGCGTGTTCAACTCGAT
GCTGGTGCCGGCCGGCCAGGTCCGCCAGTCTGATGTGGGCCGTGCCGTGGTTGCCTTCCC
CGATGAGTCGCCGCATGGGAGGCCAAGCTGAACGTTACCTTCGATGCGACTGGCACCGAG
ACATCTCCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2932#0      CAAGAATCCCC-CGAGGT------TAACAGAGAAGACGAC-TCCTCCATTCAGCCACAAT 52
consensus_2932#1      ---GAATCGCCACGAGGNGTNACGTAGCAGAGAAGACGACCTCCTCCATTCAGCCACAAT 57
                         ***** ** *****       ** ************* *******************

consensus_2932#0      GAACTCCATCCAACTGCTCGCAGCAGCGTTCGTGCTCGGCCTGGTCGGACTGACCAGCGG 112
consensus_2932#1      GAACTCCATCCAACTGCTCGCAGCAGCGTTCGTGCTCGGCCTGGTCGGACTGACCAGCGG 117
                      ************************************************************

consensus_2932#0      CCAGCTCGTCTCGCCCGGAGTCTGCCAGGACTTTCCTGGTGCACTGTGAACTTCGATGTG 172
consensus_2932#1      CCAGCTCGTCTCGCCCGGAGTCTGCCAGGACTTTCC-GGTGCAC-GTGAACTTCGATGTG 175
                      ************************************ ******* ***************

consensus_2932#0      CCTGCTGCTACCTTGGCCTGTGGTACGAGATCCTGCCGCTACGAGCAGGTGTTCCAGCGT 232
consensus_2932#1      CCG--CGCTACCTTGGCCTGTGGTACGAGATCC-GCCGCTACGAGCAGGTGTTCCAGCGT 232
                      **    *************************** **************************

consensus_2932#0      GGTGGTGAGTGCNGTTACCTGCCGAGTACTACGCTGAACTGACGATGGTAGCGTGCGCGT 292
consensus_2932#1      GGTGGTGAGTGCG-TTACC-GCCGAGTACT-CGCTGAAC-GACGATGGTAGCGTGCGCGT 288
                      ************  ***** ********** ******** ********************

consensus_2932#0      GTTCAACTCGATGCTGGTGCCTGCCCTGGCCAGGTCCTGCCAGTACTGATGTGGGCCTGT 352
consensus_2932#1      GTTCAACTCGATGCTGGTGCCGGCC--GGCCAGGTCC-GCCAGT-CTGATGTGGGCC-GT 343
                      ********************* ***  ********** ****** ************ **

consensus_2932#0      GCCTGTGGTTGCCTTCCCCGATGAGTCGCCGCT--GGAGGCCAAGCTGAACTGTTACCTT 410
consensus_2932#1      GCC-GTGGTTGCCTTCCCCGATGAGTCGCCGCATGGGAGGCCAAGCTGAAC-GTTACCTT 401
                      *** ****************************   **************** ********

consensus_2932#0      CGATGCGACTG-CACTGACATCTCCTGCAACTACTGGGTGCTGGGTACGGACTACGACAG 469
consensus_2932#1      CGATGCGACTGGCACCGAGACATCTCCGA------------------------------- 430
                      *********** *** ** *  **    *                               

consensus_2932#0      CTACGCCGTCGTGTGGGGCTGCTTCGGAGTGGGCACGACGCTGCGTGCCGAAAGTGCCTG 529
consensus_2932#1      ------------------------------------------------------------
                                                                                  

consensus_2932#0      GATCCTGTCCCGCACGCCCACGCTGACTGCCGCAGGCTGAGTGCCGAGGTTCAGCTGCTA 589
consensus_2932#1      ------------------------------------------------------------
                                                                                  

consensus_2932#0      CGTCGACCTGTACCTGAGCGAGGAAGACCTTCGTCCTGACCTGTCCAGAACTTGGACTTC 649
consensus_2932#1      ------------------------------------------------------------
                                                                                  

consensus_2932#0      TGCTGCACGATCGATCCCGAAGTTACCGCTTACCCGCAGTGCCAAAACAGTAA 702
consensus_2932#1      -----------------------------------------------------