|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_294#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 674 fasta sequence
[CCGGTAGAAGTCAATGCATGGCAAAGAATGAACATAGAGCAGACAAAAACAAGTAGCGTCAACCAAAAACAGACATATAAACAGAAACCAATGCTGATTGCAATGCAACTACATATAACCATCTTACCCAAGGTATATATATATATATACATACAAAGAAACAAACAAAATCGAGCAAATAACAAATATAAACCCAAGCATATATGGAAGAAAATATATATATTTAGAGTATTGCATTCATGCTGGGCGAGCCAATTGGTGTAGCACTTGGGAAAGAAGATGGTGAATGCGAATTTGCAGCTGCTCGTGAAAACCAGCAAACATGGCCTCAAGGTAAACGTGGGCGAAAAGCATGCGCAACAAAACAATGGCTTGACAAAATAATAGCAAGCTCGATCAAGTGTGCGATCTACTGAAAAACAACTAATCGATCGATCGTTTGAGAACAAGAAATGAACAAAAATGTTGATAGCACATGTGCGCTGTTTTGGATTATGAATTCAATGGAATTATATGCTCGTTTTAAGAAGGATACATTGAGAATGAAACAAATCTTACATTCCCGTTGATTGTTAAAGGAAAAAACAAGTAAAGGTAAACAGCGTGAGCGTGTGTTTTTGGTTAAAACTAAGACATTTAGATGGCAAGTCGGTATTACTCAGTAAGAGGTGTTT]
[+] EMBL BM626372 [CCGGTAGAAGTCAATGCATGGCAAAGAATGAACATAGAGCAGACAAAAACAAGTAGCGTCAACCAAAAACAGACATATAAACAGAAACCAATGCTGATTGCAATGCAACTACATATAACCATCTTACCCAAGGTATATATATATATATACATACAAAGAAACAAACAAAATCGAGCAAATAACAAATATAAACCCAAGCATATATGGAAGAAAATATATATATTTAGAGTATTGCATTCATGCTGGGCGAGCCAATTGGTGTAGCACTTGGGAAAGAAGATGGTGAATGCGAATTTGCAGCTGCTCGTGAAAACCAGCAAACATGGCCTCAAGGTAAACGTGGGCGAAAAGCATGCGCAACAAAACAATGGCTTGACAAAATAATAGCAAGCTCGATCAAGTGTGCGATCTACTGAAAAACAACTAATCGATCGATCGTTTGAGAACAAGAAATGAACAAAAATGTTGATAGCACATGTGCGCTGTTTTGGATTATGAATTCAATGGAATTATATGCTCGTTTTAAGAAGGATACATTGAGAATGAAACAAATCTTACATTCCCGTTGATTGTTAAAGGAAAAAACAAGTAAAGGTAAACAGCGTGAGCGTGTGTTTTTGGTTAAAACTAAGACATTTAGATGGCAAGTCGGTATTACTCAGTAAGAGGTGTTT]
consensusID : consensus_294#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 584 fasta sequence
[ACAGACATATAAACAGAAACCAATGCTGATTGCAATGCAACTACATATAACCATCTTACCCAAGGTATATATATATACATACAAAGAAACAAACAAAATCGAGCAAATAACAAATATAAACCCAAGTATATATATTTAGAGTATTGCATTCATGCTGGGCGAGCCAATTGGTGTAGCACTTGGGAAAGAAGATGGTGAATGCAAATTTGCAGCAGCTCGTGAAAACCATCAAACATGGCCTCAAGGTAAACGTGGGCGAAAAGCATGCGCAACAAAACAATGAAAAACAACTAATCGATCGATCGTTTGAGAACAAGAAATGAACAAAAATGTTGATAGCACATGTGCGCTGTTTTGGATTATGAATTCAATGGAATTATATGCTCGTTTTAAGAAGGATACATTGAGAATGGAACAAGTCTTACATTCCCGTTGATTGTTAAAGGAAAAAACAAGTAAAGGTAAACAGCGTGAGCGTGTGTTTTTGGTTAAAACTAAGACATTTAGATGGCAAGTCGGTATTACTCAGTAAGAGGTGTTTAAAGAGTTGGACAGGCAAAACCTACAGGGATAAGCAGTATAAC]
[+] EMBL BX615471 [ACAGACATATAAACAGAAACCAATGCTGATTGCAATGCAACTACATATAACCATCTTACCCAAGGTATATATATATACATACAAAGAAACAAACAAAATCGAGCAAATAACAAATATAAACCCAAGTATATATATTTAGAGTATTGCATTCATGCTGGGCGAGCCAATTGGTGTAGCACTTGGGAAAGAAGATGGTGAATGCAAATTTGCAGCAGCTCGTGAAAACCATCAAACATGGCCTCAAGGTAAACGTGGGCGAAAAGCATGCGCAACAAAACAATGAAAAACAACTAATCGATCGATCGTTTGAGAACAAGAAATGAACAAAAATGTTGATAGCACATGTGCGCTGTTTTGGATTATGAATTCAATGGAATTATATGCTCGTTTTAAGAAGGATACATTGAGAATGGAACAAGTCTTACATTCCCGTTGATTGTTAAAGGAAAAAACAAGTAAAGGTAAACAGCGTGAGCGTGTGTTTTTGGTTAAAACTAAGACATTTAGATGGCAAGTCGGTATTACTCAGTAAGAGGTGTTTAAAGAGTTGGACAGGCAAAACCTACAGGGATAAGCAGTATAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_294#0 CCGGTAGAAGTCAATGCATGGCAAAGAATGAACATAGAGCAGACAAAAACAAGTAGCGTC 60
consensus_294#1 ------------------------------------------------------------
consensus_294#0 AACCAAAAACAGACATATAAACAGAAACCAATGCTGATTGCAATGCAACTACATATAACC 120
consensus_294#1 --------ACAGACATATAAACAGAAACCAATGCTGATTGCAATGCAACTACATATAACC 52
****************************************************
consensus_294#0 ATCTTACCCAAGGTATATATATATATATACATACAAAGAAACAAACAAAATCGAGCAAAT 180
consensus_294#1 ATCTTACCCAAGGTATATATATA----TACATACAAAGAAACAAACAAAATCGAGCAAAT 108
*********************** *********************************
consensus_294#0 AACAAATATAAACCCAAGCATATATGGAAGAAAATATATATATTTAGAGTATTGCATTCA 240
consensus_294#1 AACAAATATAAACCCAAG----------------TATATATATTTAGAGTATTGCATTCA 152
****************** **************************
consensus_294#0 TGCTGGGCGAGCCAATTGGTGTAGCACTTGGGAAAGAAGATGGTGAATGCGAATTTGCAG 300
consensus_294#1 TGCTGGGCGAGCCAATTGGTGTAGCACTTGGGAAAGAAGATGGTGAATGCAAATTTGCAG 212
************************************************** *********
consensus_294#0 CTGCTCGTGAAAACCAGCAAACATGGCCTCAAGGTAAACGTGGGCGAAAAGCATGCGCAA 360
consensus_294#1 CAGCTCGTGAAAACCATCAAACATGGCCTCAAGGTAAACGTGGGCGAAAAGCATGCGCAA 272
* ************** *******************************************
consensus_294#0 CAAAACAATGGCTTGACAAAATAATAGCAAGCTCGATCAAGTGTGCGATCTACTGAAAAA 420
consensus_294#1 CAAAACAATG---------------------------------------------AAAAA 287
********** *****
consensus_294#0 CAACTAATCGATCGATCGTTTGAGAACAAGAAATGAACAAAAATGTTGATAGCACATGTG 480
consensus_294#1 CAACTAATCGATCGATCGTTTGAGAACAAGAAATGAACAAAAATGTTGATAGCACATGTG 347
************************************************************
consensus_294#0 CGCTGTTTTGGATTATGAATTCAATGGAATTATATGCTCGTTTTAAGAAGGATACATTGA 540
consensus_294#1 CGCTGTTTTGGATTATGAATTCAATGGAATTATATGCTCGTTTTAAGAAGGATACATTGA 407
************************************************************
consensus_294#0 GAATGAAACAAATCTTACATTCCCGTTGATTGTTAAAGGAAAAAACAAGTAAAGGTAAAC 600
consensus_294#1 GAATGGAACAAGTCTTACATTCCCGTTGATTGTTAAAGGAAAAAACAAGTAAAGGTAAAC 467
***** ***** ************************************************
consensus_294#0 AGCGTGAGCGTGTGTTTTTGGTTAAAACTAAGACATTTAGATGGCAAGTCGGTATTACTC 660
consensus_294#1 AGCGTGAGCGTGTGTTTTTGGTTAAAACTAAGACATTTAGATGGCAAGTCGGTATTACTC 527
************************************************************
consensus_294#0 AGTAAGAGGTGTTT------------------------------------------- 674
consensus_294#1 AGTAAGAGGTGTTTAAAGAGTTGGACAGGCAAAACCTACAGGGATAAGCAGTATAAC 584
**************
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||