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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2943#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1092 fasta sequence
[GGCAGAATCCCCCCGAGGTTTAATATTCATTGACACTTTCACCTTTAACTGACTTTATTCGGGGTANAAATGTTTGTTAAATNTAACGTTTCATATACCTTTACAACACAACGTGATCATCTCACCAATCAGATTCGTAACGGGCATAACAATAGTCATATAGTAAACGTATTAAAAGCAACATAATCGTACACAATACAAAACATCGCAGTAACAGAAACATCTACAAACAAAACGAAACTCTGTTGTATGTTGCTCTGTGACGGGATCTGGCGGANGCGTGTTAACCAAAGTGACANAACCTAAACGGACCTATNCTTAAACTGGGTACAAAATATATTAATGATATATACNGCTTGGCATTATTGATGCCACTATTAAAATGGCCCTNTGGATNNTCTGACTCAATACCGTATTTGGCNAAAACCAACACACATTACCGTATCCACATACCGGGCATCCNTCACCTGGGCACCTTGTANAGANACTGCCTGCATNTCTGNNCACAATTNCCNACCCGCNCACCNCNACCNCTGGCGCACCCACCCACCCTTGGNCNGCNACAACCCACAGANTNCCACCGCACNAAGCAAGCGCACGCATTCAACCCGCCCTTGGATACCTTNGGGTTGAGCCCCCTTAANTTGGTNAACGATTAATAAACTCTCAACCATGTAGCACAGTTNACCCACATCATCAATTGGCTTNTGACCACAGAATCATATTGTATCCNCGACCCTTTACCTAACACCAAATAAAANCCCCTAGGGACCGGACNCCCACGGCGGGGCNAAGGCAAACCGAACAACAACNCACGGNAANAACGGCAANNAAACAATAAACGGCCNCNCCACCGAACANCCAACCCGACCTGGAGAGCACCGCCCAACCACGAATACCCACAACACACACAGACAACCCCTGGGCAAACAGACACCCCTCTATCCAACAACCCAACCACTNGGCCGCCACCACCAAACACNAACAACAACACCCACAACANCNAAAACACCGNCCAACCCCACCGCGCACANCACCCCCCCCANACNCCCCCCCCACACACCNNGANACCACCGCACNNCACCACACGNG]
[+] EMBL AL932048 [GGCAGAATCCCCCCGAGGTTTAATATTCATTGACACTTTCACCTTTAACTGACTTTATTCGGGGTANAAATGTTTGTTAAATNTAACGTTTCATATACCTTTACAACACAACGTGATCATCTCACCAATCAGATTCGTAACGGGCATAACAATAGTCATATAGTAAACGTATTAAAAGCAACATAATCGTACACAATACAAAACATCGCAGTAACAGAAACATCTACAAACAAAACGAAACTCTGTTGTATGTTGCTCTGTGACGGGATCTGGCGGANGCGTGTTAACCAAAGTGACANAACCTAAACGGACCTATNCTTAAACTGGGTACAAAATATATTAATGATATATACNGCTTGGCATTATTGATGCCACTATTAAAATGGCCCTNTGGATNNTCTGACTCAATACCGTATTTGGCNAAAACCAACACACATTACCGTATCCACATACCGGGCATCCNTCACCTGGGCACCTTGTANAGANACTGCCTGCATNTCTGNNCACAATTNCCNACCCGCNCACCNCNACCNCTGGCGCACCCACCCACCCTTGGNCNGCNACAACCCACAGANTNCCACCGCACNAAGCAAGCGCACGCATTCAACCCGCCCTTGGATACCTTNGGGTTGAGCCCCCTTAANTTGGTNAACGATTAATAAACTCTCAACCATGTAGCACAGTTNACCCACATCATCAATTGGCTTNTGACCACAGAATCATATTGTATCCNCGACCCTTTACCTAACACCAAATAAAANCCCCTAGGGACCGGACNCCCACGGCGGGGCNAAGGCAAACCGAACAACAACNCACGGNAANAACGGCAANNAAACAATAAACGGCCNCNCCACCGAACANCCAACCCGACCTGGAGAGCACCGCCCAACCACGAATACCCACAACACACACAGACAACCCCTGGGCAAACAGACACCCCTCTATCCAACAACCCAACCACTNGGCCGCCACCACCAAACACNAACAACAACACCCACAACANCNAAAACACCGNCCAACCCCACCGCGCACANCACCCCCCCCANACNCCCCCCCCACACACCNNGANACCACCGCACNNCACCACACGNG]
consensusID : consensus_2943#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence
[CCAACACAACGTGATCATCTCACCAATCAGATTCGTAACGGGCATAACAATAGTCATTAGTAAACGTATTAAAAGCAACATAATCGTACACAATACAAAACATCGCAGTAACAGAAACATCTACAAAAAAACGAAACTCTGTTGTTGTGCTCTGTGACGGGATCGGCGGAAGCGTGTTAACAAAGTGACAAACTAAACGGACCTATCTAACGGTCAATATTTTGATTTAGCTGCATTTGATGCACTTAAAGCCTTGATTCGTTTTATCGTTTGCAAACAAAAAATCGTTCAATCGGTTCCTACTGCACTGTTGATTGCTGATTGTAATCACGGTTTTTGGTCACACTGTTTACAGATTCGAGAGAGAGGTATTTATTAGCATGGTTTCTGCTTTGTCGAACGAAACGAATTGAAAATTTCAATCTCTACCCTACCATTTCAGATACGCTGTACTGCTGCCCCTAGTGTTAGATATAAATTAATGTGAATTCCACTTATGCTGGCCAGTTTTGTCGGGACCTTCTACCATTCCCTGGCGCCCACGGGTTGTTCTTACATTGTAATGACTAATACGCTCAGATCCTCGCTGTAACCCATTATCCATTAGGCACTGTTTTCCTTCTAAACACATGCTGCTATACTAAATCGAACATAGTTGTACGCGCGTCGTCCCTCACCCTCATCCTGTACTGTA]
[-] EMBL BX627810 [CCAACACAACGTGATCATCTCACCAATCAGATTCGTAACGGGCATAACAATAGTCATTAGTAAACGTATTAAAAGCAACATAATCGTACACAATACAAAACATCGCAGTAACAGAAACATCTACAAAAAAACGAAACTCTGTTGTTGTGCTCTGTGACGGGATCGGCGGAAGCGTGTTAACAAAGTGACAAACTAAACGGACCTATCTAACGGTCAATATTTTGATTTAGCTGCATTTGATGCACTTAAAGCCTTGATTCGTTTTATCGTTTGCAAACAAAAAATCGTTCAATCGGTTCCTACTGCACTGTTGATTGCTGATTGTAATCACGGTTTTTGGTCACACTGTTTACAGATTCGAGAGAGAGGTATTTATTAGCATGGTTTCTGCTTTGTCGAACGAAACGAATTGAAAATTTCAATCTCTACCCTACCATTTCAGATACGCTGTACTGCTGCCCCTAGTGTTAGATATAAATTAATGTGAATTCCACTTATGCTGGCCAGTTTTGTCGGGACCTTCTACCATTCCCTGGCGCCCACGGGTTGTTCTTACATTGTAATGACTAATACGCTCAGATCCTCGCTGTAACCCATTATCCATTAGGCACTGTTTTCCTTCTAAACACATGCTGCTATACTAAATCGAACATAGTTGTACGCGCGTCGTCCCTCACCCTCATCCTGTACTGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2943#0 GGCAGAATCCCCCCGAGGTTTAATATTCATTGACACTTTCACCTTTAACTGACTTTATTC 60
consensus_2943#1 ------------------------------------------------------------
consensus_2943#0 GGGGTANAAATGTTTGTTAAATNTAACGTTTCATATACCTTTACAACACAACGTGATCAT 120
consensus_2943#1 ------------------------------------------CCAACACAACGTGATCAT 18
*****************
consensus_2943#0 CTCACCAATCAGATTCGTAACGGGCATAACAATAGTCATATAGTAAACGTATTAAAAGCA 180
consensus_2943#1 CTCACCAATCAGATTCGTAACGGGCATAACAATAGTCAT-TAGTAAACGTATTAAAAGCA 77
*************************************** ********************
consensus_2943#0 ACATAATCGTACACAATACAAAACATCGCAGTAACAGAAACATCTACAAACAAAACGAAA 240
consensus_2943#1 ACATAATCGTACACAATACAAAACATCGCAGTAACAGAAACATCTACAAA-AAAACGAAA 136
************************************************** *********
consensus_2943#0 CTCTGTTGTATGTTGCTCTGTGACGGGATCTGGCGGANGCGTGTTAACCAAAGTGACANA 300
consensus_2943#1 CTCTGTTGT-TGT-GCTCTGTGACGGGATC-GGCGGAAGCGTGTTAAC-AAAGTGACAAA 192
********* *** **************** ****** ********** ********* *
consensus_2943#0 ACCTAAACGGACCTATNCTTAAACTGGGTACAAAATATATTAATGATATATACNGCTTGG 360
consensus_2943#1 --CTAAACGGACCTATCT---AAC--GGT---CAATATTTTGATT-TAGCTGCA-TTTGA 240
************** *** *** ***** ** ** ** * * ***
consensus_2943#0 CATTATTGATGCCACTATTAAAATGGCCCTNTGGATNNTCTGACTCAATACCGTATTTGG 420
consensus_2943#1 TGCACTTAAAGCCTTGAT-----TCGTTTTATCG-TTTGCAAACAAAAAATCG--TTCAA 292
** * *** ** * * * * * * * ** ** * ** **
consensus_2943#0 CNAAAACCAACACACATTACCGTATCCACATACCGGGCATCCNTCACCTGGGCACCTTGT 480
consensus_2943#1 TCGGTTCCTAC-TGCACTGTTGATTGCTGATTGTAATCACGGTT--TTTGGTCACACTGT 349
** ** ** * * * * ** ** * *** *** ***
consensus_2943#0 ANAGANACTGCCTGCATNTCTGNNCACAATTNCCNACCCGCNCACCNCNACCNCTGGCGC 540
consensus_2943#1 TTACAGA----------TTCGAGAGAGAGGTATTTATTAGCATGGTTTCTGCTTTGTCGA 399
* * * ** * * * * ** * ** **
consensus_2943#0 ACCCACCCACCCTTGGNCNGCNACAACCCACAGANTNCCACCGCACNAAGCAAGCGCACG 600
consensus_2943#1 ACGAAACGAA---TTGAAAATTTCAATCTCTACCCTACCATTTCAGATAC--GCTGTACT 454
** * * * * * *** * * * *** ** * * **
consensus_2943#0 CATTCAACCCGCCCTTGG-ATACCTTNGGGTTGAGCCCCCTTAANTTGGTNAACGATTAA 659
consensus_2943#1 GCTGCCCCTAGTGTTAGATATAAATTAATGTGAATTCCACTTATGCTGGCCAGTTTTGTC 514
* * * * * * *** ** ** * ** **** *** * *
consensus_2943#0 TAAACTCTCAACCATGTAGCACAGTTNACCCACATCATCAATTGGCTTNTGACCACAGAA 719
consensus_2943#1 GGGACCTTCTACCATTC--CCTGGCGCCCACGGGTTGTTC-TTACATTGTAATGACTAAT 571
** ** ***** * * * * * * ** ** * * ** *
consensus_2943#0 TCATATTGTATCCNCGACCCTTTACCTAACACCAAATAAAANCC-CCTAGGGACCGGACN 778
consensus_2943#1 ACGC-TCAGATCCTCG--CTGTAACCCATTATCCATTAGGCACTGTTTTCCTTCTAAACA 628
* * **** ** * * *** * * * * ** * * * **
consensus_2943#0 CCCACGGCGGGGCNAAGGCAAACCGAACAACAACNCACGGNAANAACGGCAANNAAACAA 838
consensus_2943#1 CATGCTGCTATACTAAATCGAAC---ATAGTTGTACGCGCGTCGTCCCTCACCCTCATCC 685
* * ** * ** * *** * * * ** * ** *
consensus_2943#0 TAAACGGCCNCNCCACCGAACANCCAACCCGACCTGGAGAGCACCGCCCAACCACGAATA 898
consensus_2943#1 TGTACTGTA--------------------------------------------------- 694
* ** *
consensus_2943#0 CCCACAACACACACAGACAACCCCTGGGCAAACAGACACCCCTCTATCCAACAACCCAAC 958
consensus_2943#1 ------------------------------------------------------------
consensus_2943#0 CACTNGGCCGCCACCACCAAACACNAACAACAACACCCACAACANCNAAAACACCGNCCA 1018
consensus_2943#1 ------------------------------------------------------------
consensus_2943#0 ACCCCACCGCGCACANCACCCCCCCCANACNCCCCCCCCACACACCNNGANACCACCGCA 1078
consensus_2943#1 ------------------------------------------------------------
consensus_2943#0 CNNCACCACACGNG 1092
consensus_2943#1 --------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||