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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2944#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence
[AGGCCAAGAATCCGCACGAGNGGGAATTTGTCCACCACTTCACCGCTAGAGCAGGAAGAGCAGGAGTCGGTCAACACAAAGCTCTCGTCGTCGCTGAAATCGGACGAGATGGAGCGATCGAGCGAACAGGTCGACGAACGGGAACAGTCCCGGGGCGAATTGTCCTTCATCGGGGGGCGCCATTCGATCAGCATGCGTGCGTCGATCGGCGAGAAGCTGTCCTCGACACACATTGGCGAGATGGATCCTCTCGGTCCAATGGCCAATGTTGAAACGGTTTTTGCTTCAGCTGAGAACGCGCAATCCCCTGTCGAGGAGGGCGCACACAGCTCTGAAAAGTTGGAGTCGAACTCCCCTGCAAAGGATGATTCGAGCAGCGTGCGATTGATCGAAAAATCGGAAGAAATCCTCTGCCTCAGCAGCAGCGACGATAGGGTGAAGGTGACGTTCGTGGAGGAAACGAGACCATCGATCGACGTTAAGACTCGTCCACAAGCGCTCGTTCAACCGACCATAACGTCGTTCGTGCGCAGTCAGGACACCGGCGCAGCAGCGAACAGCGGCGTCTCCCAAAGGCGGAGTACGACGCCAAGGTGCNGGCGGCATGGGNCGGGGAGCTTAAAAAGCCAGGTCGTGATGGATCGACAAACGTTGATTGCGCCAACAGTTGNCCAAGGCTGG]
[+] EMBL BX468253 [AGGCCAAGAATCCGCACGAGNGGGAATTTGTCCACCACTTCACCGCTAGAGCAGGAAGAGCAGGAGTCGGTCAACACAAAGCTCTCGTCGTCGCTGAAATCGGACGAGATGGAGCGATCGAGCGAACAGGTCGACGAACGGGAACAGTCCCGGGGCGAATTGTCCTTCATCGGGGGGCGCCATTCGATCAGCATGCGTGCGTCGATCGGCGAGAAGCTGTCCTCGACACACATTGGCGAGATGGATCCTCTCGGTCCAATGGCCAATGTTGAAACGGTTTTTGCTTCAGCTGAGAACGCGCAATCCCCTGTCGAGGAGGGCGCACACAGCTCTGAAAAGTTGGAGTCGAACTCCCCTGCAAAGGATGATTCGAGCAGCGTGCGATTGATCGAAAAATCGGAAGAAATCCTCTGCCTCAGCAGCAGCGACGATAGGGTGAAGGTGACGTTCGTGGAGGAAACGAGACCATCGATCGACGTTAAGACTCGTCCACAAGCGCTCGTTCAACCGACCATAACGTCGTTCGTGCGCAGTCAGGACACCGGCGCAGCAGCGAACAGCGGCGTCTCCCAAAGGCGGAGTACGACGCCAAGGTGCNGGCGGCATGGGNCGGGGAGCTTAAAAAGCCAGGTCGTGATGGATCGACAAACGTTGATTGCGCCAACAGTTGNCCAAGGCTGG]
consensusID : consensus_2944#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence
[CCGCCCACGCGTCCGATTCGAGCAGCGTGCGATTGATCGAAAAATCGGAAGAAATCCTCTGCCTCAGCAGCAGCGACGATGAGGGTGAAGTGACGTTCGTGGAGGAAACGAGACCATCGATCGACGTTAAGACTCGTCCACAAGCGCTCGTTCAACCGACCATAACGTCGTTCGTGCGCAGTCAGGACACGGCGCAGCAGCGACAGCGCGTCTCCCAAAGCGAGTACGACGCCAAGGTGCGGCGCATGGCGGAGCTTAAAAGCCAGGTCGTGATGATCGACAACGTGATGCGCAACAGTGCCAAGCTGCCGGACAAGGGGGCCGGGTTGGTGCGCCGGCTGGCCGAGGTAAAGTCGCAAATATTCGAGCTGTCGAAGGACATCGAGATGACGCGTGCGACGCCGAGCAAGGGCATCAAGAAAACGATACAGCGAAACTTTGACGAAAACATCAGCGGAGGCGATACGAAGCCCCGGCCGGCCGACCACATCTCGTGGGACACGATCAAGCGGGCGACGGACGATATACAGCCGCGGCACACCGGCAAGCAGGGCATTGCGACGTTCGAGAACCAGAAGCTGCTCACGATGGACCGTCTGGAGACGCTGCACAAGTCGATCGAGACGTGCCCGTCCGAGGACACGCTGGCCGATCCGCCCAAGCTGCTCAAGATCGAGCTG]
[+] EMBL BM587648 [CCGCCCACGCGTCCGATTCGAGCAGCGTGCGATTGATCGAAAAATCGGAAGAAATCCTCTGCCTCAGCAGCAGCGACGATGAGGGTGAAGTGACGTTCGTGGAGGAAACGAGACCATCGATCGACGTTAAGACTCGTCCACAAGCGCTCGTTCAACCGACCATAACGTCGTTCGTGCGCAGTCAGGACACGGCGCAGCAGCGACAGCGCGTCTCCCAAAGCGAGTACGACGCCAAGGTGCGGCGCATGGCGGAGCTTAAAAGCCAGGTCGTGATGATCGACAACGTGATGCGCAACAGTGCCAAGCTGCCGGACAAGGGGGCCGGGTTGGTGCGCCGGCTGGCCGAGGTAAAGTCGCAAATATTCGAGCTGTCGAAGGACATCGAGATGACGCGTGCGACGCCGAGCAAGGGCATCAAGAAAACGATACAGCGAAACTTTGACGAAAACATCAGCGGAGGCGATACGAAGCCCCGGCCGGCCGACCACATCTCGTGGGACACGATCAAGCGGGCGACGGACGATATACAGCCGCGGCACACCGGCAAGCAGGGCATTGCGACGTTCGAGAACCAGAAGCTGCTCACGATGGACCGTCTGGAGACGCTGCACAAGTCGATCGAGACGTGCCCGTCCGAGGACACGCTGGCCGATCCGCCCAAGCTGCTCAAGATCGAGCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2944#0 AGGCCAAGAATCCGCACGAGNGGG-AATTTGTCCACCACTTCACCGCTAGAGCAGGAAGA 59
consensus_2944#1 -----------CCGCCCACGCGTCCGATTCGAGCAGCGTGCGATTGATCGAAAAATCGGA 49
**** * * * *** * ** * * * * ** * **
consensus_2944#0 GCAGGAG-TCGGTCAACACAAAGCTCTCGTCGTCGCTGAAATCGGACGAGATGGAGCGAT 118
consensus_2944#1 AGAAATCCTCTGCCTCAGCAGCAGCGACGATGAGGGTGAAGTGACGTTCG-TGGAGGAAA 108
* ** * * ** ** * * **** * * ***** *
consensus_2944#0 CGAGCGAACAGGTCGACGAACGGGAACAGTCCCGGGGCGAATTGTCCTTCATCGGGGGGC 178
consensus_2944#1 CGAGACCATCGATCGACGT-TAAGACTCGTCCACAAGCGC-TCGTTCAACCGACCATAAC 166
**** * * ****** ** **** *** * ** * * *
consensus_2944#0 GCCATTCGATC--AGCATGCGTGCGTCG-ATCGGCGAGAAGCTGTCCTCGACACACATTG 235
consensus_2944#1 GTCGTTCGTGCGCAGTCAGGACACGGCGCAGCAGCGACAGCGCGTCTCCCAAA---GCGA 223
* * **** * ** * ** ** * * **** * *** * * *
consensus_2944#0 GCGAGATGGATCCTCTCGGTCCAATGGCCAATGTTGAAACGGTTTTTGCTTCAGCTGAGA 295
consensus_2944#1 GTACGACGCCAAGGTGCGGCGCA-TGGCGGAGCTTAAAAGCCAGGTCGTGATGATCGACA 282
* ** * *** ** **** * ** *** * * ** *
consensus_2944#0 ACGCGCAATCCCCTGTCGAGGAGGGCGCACACAGCTCTGAAAAGTTGGAGTCGAACTCCC 355
consensus_2944#1 ACGTGATGCGCAACAGTGCCAAGCTGCCGGACAAGGGGGCCGGGTTGGTGC---GCCGGC 339
*** * * * ** * *** * ***** * * *
consensus_2944#0 CTGCAAAGGATGATTCGAGCAGCGTGCGATTGATCGAAAAATCGGAAGAAATCCTCTGC- 414
consensus_2944#1 TGGCCGAGGTAAAGTCGCA-AATATTCGAGCTGTCGAAGGACATCGAGATGACGCGTGCG 398
** *** * *** * * *** ***** * *** * ***
consensus_2944#0 ---CTCAGCAGCAGCGACGATAGGGTGAAG--GTGACGTTCGTGGAGGAAACGAGACCAT 469
consensus_2944#1 ACGCCGAGCAAGGGCATCAAGAAAACGATACAGCGAAACTT-TGACGAAAACATCAGCGG 457
* **** ** * * * ** * ** * ** * **** * *
consensus_2944#0 CGATCGACGTTAAGACTCGTCCACAAGCGCTCGTTCAACCGACCATAACGTCGTTCGTGC 529
consensus_2944#1 AGG-CGATACGAAGCCCCGGCCGGCCGACCACATCTCGTGGGACACGA--TCAAGCGGGC 514
* *** *** * ** ** * * * * * ** * ** ** **
consensus_2944#0 G-CAGTCAGGACACCGGCGCAGCAG--CGAACAGCGGCGTCTCCCAAAGGCGGAGTACGA 586
consensus_2944#1 GACGGACGATATACAGCCGCGGCACACCGGCAAGCAGGGCATTGCGACGTTCGAGAACCA 574
* * * * * ** * *** *** ** *** * * * * * * *** ** *
consensus_2944#0 CGCCAAGGTGCNGGCGGCATGGGNCGGGGAGCTTAAAAAGCCAG----GTCGTGATGGAT 642
consensus_2944#1 GAAGCTGCTCACGATGGACCGTCTGGAGACGCTGCACAAGTCGATCGAGACGTGCCCGTC 634
* * * ** * * * *** * *** * * **** *
consensus_2944#0 CGACAA-ACGTTGATTGCGCCAAC--AGTTGNCCAAGGCTGG---- 681
consensus_2944#1 CGAGGACACGCTGGCCGATCCGCCCAAGCTGCTCAAGATCGAGCTG 680
*** * *** ** * ** * ** ** **** *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||