cluster # 295

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Anopheles gambiae
cluster # 295 cluster # 295 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_295#0 length = 696 sequences # 1

consensus_295#1 length = 621 sequences # 1

consensusID : consensus_295#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 696
fasta sequence

                              [GCCAAGAATCGCCACGAGGTGCAGTGTACGGTTGTTGTGTTCCGCGTCTTGTGGCAGCTTCTCTCAAGGTTAACGTGAAGTAGTTACGCAAGGCAGGCAGGTGAAAGCAGCCAGTGGCGCCAAAAAGGCTCTCAAAAGTTTTCCCACACAGTTTCCGAACGTCCCAGAGCACTCGCAACGACCCACGATGATGTCCTCGCTGCAGGTCCGTGTTTCTCGTTAAGCTTACTGGTGATTGCGGGTATTCATCCAGAAGGGTGATGCCAATCCGTTTGCTTCGGAGTGCAACAGGTGCGGGAGGACTCGGACCTTGCACGCACGACAAACCCCGCCGGGACTCGATGTCGGTCGACATGCAAACGACCACAAAGGGACGGGCAAACAAAGGTACACCCTTTCTGCCGGGAAAGATTTGTCCCAGAATCATCGAGTTTCCCGGGTGGAAACAAAGCTTTCCCCCCAGACAAGCGAGTGATCCGTGGATGCGGCTGGGATGAGTCCTCCTACAAGGGCCGCTGCNTACCAGCGCTCCGGGTTCGGTGGACGCCAGGAGGTGTGCGCCTGACTACGATGGACAATTGCAACGGTGCATCCTCGCTGTCCGTCACCTTCGGCGTGCTTGCTGTTCGGTGCAATCGCTTTCCTGATTCGTGCTTAATCCAAGTCAANGGTTCCNATTCCACCGGACATATCCAG]

[+] EMBL BX468796             [GCCAAGAATCGCCACGAGGTGCAGTGTACGGTTGTTGTGTTCCGCGTCTTGTGGCAGCTTCTCTCAAGGTTAACGTGAAGTAGTTACGCAAGGCAGGCAGGTGAAAGCAGCCAGTGGCGCCAAAAAGGCTCTCAAAAGTTTTCCCACACAGTTTCCGAACGTCCCAGAGCACTCGCAACGACCCACGATGATGTCCTCGCTGCAGGTCCGTGTTTCTCGTTAAGCTTACTGGTGATTGCGGGTATTCATCCAGAAGGGTGATGCCAATCCGTTTGCTTCGGAGTGCAACAGGTGCGGGAGGACTCGGACCTTGCACGCACGACAAACCCCGCCGGGACTCGATGTCGGTCGACATGCAAACGACCACAAAGGGACGGGCAAACAAAGGTACACCCTTTCTGCCGGGAAAGATTTGTCCCAGAATCATCGAGTTTCCCGGGTGGAAACAAAGCTTTCCCCCCAGACAAGCGAGTGATCCGTGGATGCGGCTGGGATGAGTCCTCCTACAAGGGCCGCTGCNTACCAGCGCTCCGGGTTCGGTGGACGCCAGGAGGTGTGCGCCTGACTACGATGGACAATTGCAACGGTGCATCCTCGCTGTCCGTCACCTTCGGCGTGCTTGCTGTTCGGTGCAATCGCTTTCCTGATTCGTGCTTAATCCAAGTCAANGGTTCCNATTCCACCGGACATATCCAG]




>consensus_295#0
GCCAAGAATCGCCACGAGGTGCAGTGTACGGTTGTTGTGTTCCGCGTCTTGTGGCAGCTT
CTCTCAAGGTTAACGTGAAGTAGTTACGCAAGGCAGGCAGGTGAAAGCAGCCAGTGGCGC
CAAAAAGGCTCTCAAAAGTTTTCCCACACAGTTTCCGAACGTCCCAGAGCACTCGCAACG
ACCCACGATGATGTCCTCGCTGCAGGTCCGTGTTTCTCGTTAAGCTTACTGGTGATTGCG
GGTATTCATCCAGAAGGGTGATGCCAATCCGTTTGCTTCGGAGTGCAACAGGTGCGGGAG
GACTCGGACCTTGCACGCACGACAAACCCCGCCGGGACTCGATGTCGGTCGACATGCAAA
CGACCACAAAGGGACGGGCAAACAAAGGTACACCCTTTCTGCCGGGAAAGATTTGTCCCA
GAATCATCGAGTTTCCCGGGTGGAAACAAAGCTTTCCCCCCAGACAAGCGAGTGATCCGT
GGATGCGGCTGGGATGAGTCCTCCTACAAGGGCCGCTGCNTACCAGCGCTCCGGGTTCGG
TGGACGCCAGGAGGTGTGCGCCTGACTACGATGGACAATTGCAACGGTGCATCCTCGCTG
TCCGTCACCTTCGGCGTGCTTGCTGTTCGGTGCAATCGCTTTCCTGATTCGTGCTTAATC
CAAGTCAANGGTTCCNATTCCACCGGACATATCCAG

consensusID : consensus_295#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 621
fasta sequence

                              [CCGCCCACGCGTCCGCTACACACTCACACACACACGATCACGCAAACAAAATGCCAACAAAAGTAGTGTGCCTGCGCAACGAAGCGCATCGCGCATGCCCTTACCGCGCCGCCATCAACAGTTATTTCGACTCCCGTCTCTATTGCTGGTTTTTATTTTTATGTTTATTATCACTATGGAAGCGTAATGTGCCGCCTTTGGAGGAGCGAACACGGTCTCGGACGTTGGAGGAAACAAACCCAGCACGGAGCAGCAGCTTGCGTACGATCCTCCGAGTAGTTGTGTGTGCTTAAGACGTTAGAAACCGATTCTGGTGCGCAACAATCCGATCCGACAGCATCTCGCGGTGAACACAGCGGCACAGGTGAACTAGTAAGAGGAGCATGCATTGCGCGTGCTCTAGCCATCAGGATGTGTAAAGCTAGATTGACACAGAACAGGAAAAGTGTTATTCGTTCGTTCGTACAGGAAAAAAGTGTCTGGAAAAAAGTGTGTACTAACTGGTAGAGAACAGAAAAAAAGGAAGGAGGATCAACACAATACTACGAGCAAAGTGCTGCCGCCGTCGCTGCTGCTGCTGCTGCTGCTGATGATGATAATCGTGTTGAGCAAACCATTTTA]

[+] EMBL BM627930             [CCGCCCACGCGTCCGCTACACACTCACACACACACGATCACGCAAACAAAATGCCAACAAAAGTAGTGTGCCTGCGCAACGAAGCGCATCGCGCATGCCCTTACCGCGCCGCCATCAACAGTTATTTCGACTCCCGTCTCTATTGCTGGTTTTTATTTTTATGTTTATTATCACTATGGAAGCGTAATGTGCCGCCTTTGGAGGAGCGAACACGGTCTCGGACGTTGGAGGAAACAAACCCAGCACGGAGCAGCAGCTTGCGTACGATCCTCCGAGTAGTTGTGTGTGCTTAAGACGTTAGAAACCGATTCTGGTGCGCAACAATCCGATCCGACAGCATCTCGCGGTGAACACAGCGGCACAGGTGAACTAGTAAGAGGAGCATGCATTGCGCGTGCTCTAGCCATCAGGATGTGTAAAGCTAGATTGACACAGAACAGGAAAAGTGTTATTCGTTCGTTCGTACAGGAAAAAAGTGTCTGGAAAAAAGTGTGTACTAACTGGTAGAGAACAGAAAAAAAGGAAGGAGGATCAACACAATACTACGAGCAAAGTGCTGCCGCCGTCGCTGCTGCTGCTGCTGCTGCTGATGATGATAATCGTGTTGAGCAAACCATTTTA]




>consensus_295#1
CCGCCCACGCGTCCGCTACACACTCACACACACACGATCACGCAAACAAAATGCCAACAA
AAGTAGTGTGCCTGCGCAACGAAGCGCATCGCGCATGCCCTTACCGCGCCGCCATCAACA
GTTATTTCGACTCCCGTCTCTATTGCTGGTTTTTATTTTTATGTTTATTATCACTATGGA
AGCGTAATGTGCCGCCTTTGGAGGAGCGAACACGGTCTCGGACGTTGGAGGAAACAAACC
CAGCACGGAGCAGCAGCTTGCGTACGATCCTCCGAGTAGTTGTGTGTGCTTAAGACGTTA
GAAACCGATTCTGGTGCGCAACAATCCGATCCGACAGCATCTCGCGGTGAACACAGCGGC
ACAGGTGAACTAGTAAGAGGAGCATGCATTGCGCGTGCTCTAGCCATCAGGATGTGTAAA
GCTAGATTGACACAGAACAGGAAAAGTGTTATTCGTTCGTTCGTACAGGAAAAAAGTGTC
TGGAAAAAAGTGTGTACTAACTGGTAGAGAACAGAAAAAAAGGAAGGAGGATCAACACAA
TACTACGAGCAAAGTGCTGCCGCCGTCGCTGCTGCTGCTGCTGCTGCTGATGATGATAAT
CGTGTTGAGCAAACCATTTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_295#0      GCCAAGAATCGCCACGAGGTGCAGTGTACGGTTGTTGTGTTCCGCGTCTTGTGGCAGCTT 60
consensus_295#1      ------------------------------------------------------------
                                                                                 

consensus_295#0      CTCTCAAGGTTAACGTGAAGTAGTTACGCAAGGCAGGCAGGTGAAAGCAGCCAGTGGCGC 120
consensus_295#1      ------------CCGCCCACGCGTC-CGCTACACACTCACACACACACGATCAC--GCAA 45
                                  **   *   **  *** *  **  **     *  *   **   **  

consensus_295#0      CAAAAAGGCTCTCAAAAGTTTTCCCACACAGTTTCCGAACGTCCCA-GAGCACTCGCAAC 179
consensus_295#1      ACAAAATGCCAACAAAAGTAGTGTGCCTGCGCAACGAAGCGCATCGCGCATGCCCTTACC 105
                       **** **   *******  *    *   *   *  * **   *  *    * *  * *

consensus_295#0      GACCCACGATGATGTCCTCGCTGCAGGTCCGTGTTTCTCGTTAAGCTTACTGGTGATTGC 239
consensus_295#1      GCGCCGCCATCAACAGTTATTTCGACTCCCGTCTCTATTGCTGGTTTTTATTTTTATGTT 165
                     *  ** * ** *     *   *  *   **** * * * * *    **  *  * **   

consensus_295#0      GGGTATTCATCCAGAAGGGTGATGCCAATCCGTTTGCTTCG-GAGTGCAA---CAGGTGC 295
consensus_295#1      TATTATCACTATGGAAGCGTAATGTGCCGCCTTTGGAGGAGCGAACACGGTCTCGGACGT 225
                        ***   *   **** ** ***     ** ** *    * **   *     * *  * 

consensus_295#0      GGGAGGACTCGGACCTTGCACGCA-CGACAAACCCCGC-CGGGACTCGATGTCGGTCGAC 353
consensus_295#1      TGGAGGAAACAAACCCAGCACGGAGCAGCAGCTTGCGTACGATCCTCCGAGTAGTTGTGT 285
                      ******  *  ***  ***** * *  **     **  **   ***   ** * *    

consensus_295#0      ATGCAAACGACCACAAAGGGACGGGCAAACAAAGGTACACCCTTTCTGCCGGGAAAGATT 413
consensus_295#1      GTGCTTAAGACGTT--AGAAACCGATT--CTGGTGCGCAACAATCCGATCCGACAGCATC 341
                      ***  * ***     **  ** *     *    *  ** *  * *   * *  *  ** 

consensus_295#0      TGTCCCAGAAT-CATCGAGTTTCCCGGGT--GGAAACAAAGCTTTCCCCCCAGACAAGCG 470
consensus_295#1      TCGCGGTGAACACAGCGGCACAGGTGAACTAGTAAGAGGAGCATGCATTGCGCGTGCTCT 401
                     *  *   ***  ** **        *     * **    *** * *    *       * 

consensus_295#0      AGTGATCCG--TGGATGCGGCTGGGATGAGTCCTCCTACAAGGGCCGCTGCNTACCAGCG 528
consensus_295#1      AGCCATCAGGATGTGTAAAGCTAGATTGACACAGAACAGGAAAAGTGTTATTCGTTCGTT 461
                     **  *** *  **  *   *** *  ***  *     *  *     * *        *  

consensus_295#0      C-TCCGGGTTCG--GTGGACGCCAGGAGGTGTGCGC---CTGACTACGA-TGGACAATTG 581
consensus_295#1      CGTACAGGAAAAAAGTGTCTGGAAAAAAGTGTGTACTAACTGGTAGAGAACAGAAAAAAA 521
                     * * * **      ***   *  *  * *****  *   ***     **   ** **   

consensus_295#0      CAACGGTGCATCCTCGCTGTCCGTCACCTTCGGCGTGCTTGCTGTTCGGTGCAATCGCTT 641
consensus_295#1      GGAAGGAGGATCAACACAATACTACGAGCAAAGTGCTGCCGCCGT-CGCTGCTGCTGCTG 580
                       * ** * ***  * *  * *  *       * *     ** ** ** ***    *** 

consensus_295#0      TCCTGATTCGTGCTTA-ATCCAAGTCAANGGTTCCNATTCCACCGGACATATCCAG 696
consensus_295#1      CTGCTGCTGATGATGATAATCGTGTTGAGCAAACCATTTTA--------------- 621
                            *  ** * * *  *  **  *     **  **