cluster # 2965

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Anopheles gambiae
cluster # 2965 cluster # 2965 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2965#0 length = 583 sequences # 1

consensus_2965#1 length = 144 sequences # 1

consensusID : consensus_2965#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 583
fasta sequence

                              [GGTATTGAGGGCTTCGATTCACCTTTAAATCTTGTAACAATTCCCACGATTAAATGGTTTTCAACGTTTCAAACGAAAATCGTTAACACTTCAAAACTTGAAACATATCAGAATAGTAACATGGTTGGTAAAATGCTCACACATCATTTTGGAACGGGTGTTTACACCAAACAGTGAGGATGTCATTTTTGTACGCCCTAGTAATGGGGTTTCTCTACCCAATTTTTTTATAATTGATAAGTATGTAACGTTAAGATGATCCTATTCCCCAGATCACTTTTACCCACCTGGTGTGTGTGGTAGCAGCGACAGCAAGCATAATGTTTCGATTCGGTTTTGTATGTTTTATCAAACTAATTCAAAAATTAAAAAAAAATACCTTTCCATTTTCTCGCCGTCGCAAAAGATTGATGCTCAAACCGAACAGCCTGCAGCATAAGATCAGTCGACTTCTTCTCTGTCGTTTAATAGTAAATTACAAGCCTATTTTCCTCGCCGAGGCTTTACCGGTGAAGCCAGTACAAGTATGGGGGCGGGGAAGCAACACAACAAAACAAACAAAACAGTGTTAACTAAAAGGATA]

[+] EMBL BX611091             [GGTATTGAGGGCTTCGATTCACCTTTAAATCTTGTAACAATTCCCACGATTAAATGGTTTTCAACGTTTCAAACGAAAATCGTTAACACTTCAAAACTTGAAACATATCAGAATAGTAACATGGTTGGTAAAATGCTCACACATCATTTTGGAACGGGTGTTTACACCAAACAGTGAGGATGTCATTTTTGTACGCCCTAGTAATGGGGTTTCTCTACCCAATTTTTTTATAATTGATAAGTATGTAACGTTAAGATGATCCTATTCCCCAGATCACTTTTACCCACCTGGTGTGTGTGGTAGCAGCGACAGCAAGCATAATGTTTCGATTCGGTTTTGTATGTTTTATCAAACTAATTCAAAAATTAAAAAAAAATACCTTTCCATTTTCTCGCCGTCGCAAAAGATTGATGCTCAAACCGAACAGCCTGCAGCATAAGATCAGTCGACTTCTTCTCTGTCGTTTAATAGTAAATTACAAGCCTATTTTCCTCGCCGAGGCTTTACCGGTGAAGCCAGTACAAGTATGGGGGCGGGGAAGCAACACAACAAAACAAACAAAACAGTGTTAACTAAAAGGATA]




>consensus_2965#0
GGTATTGAGGGCTTCGATTCACCTTTAAATCTTGTAACAATTCCCACGATTAAATGGTTT
TCAACGTTTCAAACGAAAATCGTTAACACTTCAAAACTTGAAACATATCAGAATAGTAAC
ATGGTTGGTAAAATGCTCACACATCATTTTGGAACGGGTGTTTACACCAAACAGTGAGGA
TGTCATTTTTGTACGCCCTAGTAATGGGGTTTCTCTACCCAATTTTTTTATAATTGATAA
GTATGTAACGTTAAGATGATCCTATTCCCCAGATCACTTTTACCCACCTGGTGTGTGTGG
TAGCAGCGACAGCAAGCATAATGTTTCGATTCGGTTTTGTATGTTTTATCAAACTAATTC
AAAAATTAAAAAAAAATACCTTTCCATTTTCTCGCCGTCGCAAAAGATTGATGCTCAAAC
CGAACAGCCTGCAGCATAAGATCAGTCGACTTCTTCTCTGTCGTTTAATAGTAAATTACA
AGCCTATTTTCCTCGCCGAGGCTTTACCGGTGAAGCCAGTACAAGTATGGGGGCGGGGAA
GCAACACAACAAAACAAACAAAACAGTGTTAACTAAAAGGATA

consensusID : consensus_2965#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 144
fasta sequence

                              [CTCTCGGGCGTGTAATAGTAAATGACAAGCCTATGTCCCTCGCCGAGGCTTTACCGGTGAAGCCAGTACAAGTATGGGGGCGGGGAAGCAACACAACAAAACAAACAAAACAGGGGCAACTAAAAGGAGATAAAGGAAGGAGGA]

[+] EMBL BX610244             [CTCTCGGGCGTGTAATAGTAAATGACAAGCCTATGTCCCTCGCCGAGGCTTTACCGGTGAAGCCAGTACAAGTATGGGGGCGGGGAAGCAACACAACAAAACAAACAAAACAGGGGCAACTAAAAGGAGATAAAGGAAGGAGGA]




>consensus_2965#1
CTCTCGGGCGTGTAATAGTAAATGACAAGCCTATGTCCCTCGCCGAGGCTTTACCGGTGA
AGCCAGTACAAGTATGGGGGCGGGGAAGCAACACAACAAAACAAACAAAACAGGGGCAAC
TAAAAGGAGATAAAGGAAGGAGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2965#0      GGTATTGAGGGCTTCGATTCACCTTTAAATCTTGTAACAATTCCCACGATTAAATGGTTT 60
consensus_2965#1      ------------------------------------------------------------
                                                                                  

consensus_2965#0      TCAACGTTTCAAACGAAAATCGTTAACACTTCAAAACTTGAAACATATCAGAATAGTAAC 120
consensus_2965#1      ------------------------------------------------------------
                                                                                  

consensus_2965#0      ATGGTTGGTAAAATGCTCACACATCATTTTGGAACGGGTGTTTACACCAAACAGTGAGGA 180
consensus_2965#1      ------------------------------------------------------------
                                                                                  

consensus_2965#0      TGTCATTTTTGTACGCCCTAGTAATGGGGTTTCTCTACCCAATTTTTTTATAATTGATAA 240
consensus_2965#1      ------------------------------------------------------------
                                                                                  

consensus_2965#0      GTATGTAACGTTAAGATGATCCTATTCCCCAGATCACTTTTACCCACCTGGTGTGTGTGG 300
consensus_2965#1      ------------------------------------------------------------
                                                                                  

consensus_2965#0      TAGCAGCGACAGCAAGCATAATGTTTCGATTCGGTTTTGTATGTTTTATCAAACTAATTC 360
consensus_2965#1      ------------------------------------------------------------
                                                                                  

consensus_2965#0      AAAAATTAAAAAAAAATACCTTTCCATTTTCTCGCCGTCGCAAAAGATTGATGCTCAAAC 420
consensus_2965#1      ------------------------------------------------------------
                                                                                  

consensus_2965#0      CGAACAGCCTGCAGCATAAGATCAGTCGACTTCTTCTCTGTCGTTTAATAGTAAATTACA 480
consensus_2965#1      ---------------------------------CTCTCGGGCGTGTAATAGTAAATGACA 27
                                                        **** * *** *********** ***

consensus_2965#0      AGCCTATTTTCCTCGCCGAGGCTTTACCGGTGAAGCCAGTACAAGTATGGGGGCGGGGAA 540
consensus_2965#1      AGCCTATGTCCCTCGCCGAGGCTTTACCGGTGAAGCCAGTACAAGTATGGGGGCGGGGAA 87
                      ******* * **************************************************

consensus_2965#0      GCAACACAACAAAACAAACAAAACAGTGTTAACTAAAAGGATA-------------- 583
consensus_2965#1      GCAACACAACAAAACAAACAAAACAGGGGCAACTAAAAGGAGATAAAGGAAGGAGGA 144
                      ************************** *  *********** *