cluster # 2976

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Anopheles gambiae
cluster # 2976 cluster # 2976 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2976#0 length = 636 sequences # 1

consensus_2976#1 length = 100 sequences # 1

consensusID : consensus_2976#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 636
fasta sequence

                              [TTGTGAGTAGCTTTGGGCAATAACTATCCATGGGAATGTTAACAGATCGCAACATGTACGAAGAAGAGTACGATGAGGCTGCAGAGATGCTGGTGGTTTACGATCCCGAACCGGAGATCGATTATACCAGTTCAATCTTGCCGCAAAAGACGCCGTTGGACGAGCATAGCTACTTTTTCTCCGCAGAAAGGACCCTAGAACTGATTGCCATCGTTGAGAGTGAACCATTTCTATGGGATAAGACGCAGCTCGATTACAAGAATGTAAAAATGACTGAAAATGCCTGGCGCATGGTAGCGTCCAAGATGGAGCTTGACGTGGAGGTGTGCAAGGAGAAGTGGACCTGTCTGCGGGCCCAGTTTCGCAAGCTGAAGCGAAGAATGATACAGTCAAGCCAGAATGGAACAGGCACGGACGAGATATATCAACCATCCTGGTATGCGTACGAAGCAATGGCATTCCTAAACGAAGCAGTGGAATGTGAAGGTGATACAAATACGGTTGATGGAAACAACACCCAATACTGCACAGCAAACACGAAATTGAAGCCACCGTTAGACGACATTCCCTTTCGCGGGAAAACACCCTTGAGCTTGTTTCTATCATTGAGGGCTTGCCTGTACTGTGGAATAGAGC]

[+] EMBL BX624685             [TTGTGAGTAGCTTTGGGCAATAACTATCCATGGGAATGTTAACAGATCGCAACATGTACGAAGAAGAGTACGATGAGGCTGCAGAGATGCTGGTGGTTTACGATCCCGAACCGGAGATCGATTATACCAGTTCAATCTTGCCGCAAAAGACGCCGTTGGACGAGCATAGCTACTTTTTCTCCGCAGAAAGGACCCTAGAACTGATTGCCATCGTTGAGAGTGAACCATTTCTATGGGATAAGACGCAGCTCGATTACAAGAATGTAAAAATGACTGAAAATGCCTGGCGCATGGTAGCGTCCAAGATGGAGCTTGACGTGGAGGTGTGCAAGGAGAAGTGGACCTGTCTGCGGGCCCAGTTTCGCAAGCTGAAGCGAAGAATGATACAGTCAAGCCAGAATGGAACAGGCACGGACGAGATATATCAACCATCCTGGTATGCGTACGAAGCAATGGCATTCCTAAACGAAGCAGTGGAATGTGAAGGTGATACAAATACGGTTGATGGAAACAACACCCAATACTGCACAGCAAACACGAAATTGAAGCCACCGTTAGACGACATTCCCTTTCGCGGGAAAACACCCTTGAGCTTGTTTCTATCATTGAGGGCTTGCCTGTACTGTGGAATAGAGC]




>consensus_2976#0
TTGTGAGTAGCTTTGGGCAATAACTATCCATGGGAATGTTAACAGATCGCAACATGTACG
AAGAAGAGTACGATGAGGCTGCAGAGATGCTGGTGGTTTACGATCCCGAACCGGAGATCG
ATTATACCAGTTCAATCTTGCCGCAAAAGACGCCGTTGGACGAGCATAGCTACTTTTTCT
CCGCAGAAAGGACCCTAGAACTGATTGCCATCGTTGAGAGTGAACCATTTCTATGGGATA
AGACGCAGCTCGATTACAAGAATGTAAAAATGACTGAAAATGCCTGGCGCATGGTAGCGT
CCAAGATGGAGCTTGACGTGGAGGTGTGCAAGGAGAAGTGGACCTGTCTGCGGGCCCAGT
TTCGCAAGCTGAAGCGAAGAATGATACAGTCAAGCCAGAATGGAACAGGCACGGACGAGA
TATATCAACCATCCTGGTATGCGTACGAAGCAATGGCATTCCTAAACGAAGCAGTGGAAT
GTGAAGGTGATACAAATACGGTTGATGGAAACAACACCCAATACTGCACAGCAAACACGA
AATTGAAGCCACCGTTAGACGACATTCCCTTTCGCGGGAAAACACCCTTGAGCTTGTTTC
TATCATTGAGGGCTTGCCTGTACTGTGGAATAGAGC

consensusID : consensus_2976#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 100
fasta sequence

                              [ATGCTGGTGGTTTACGATCCCGAACCGGAGGTCGATTCCAACAGTCCAATATTACAGCAAAAGACGCCGTTGGACGAGCATAGCTACTTTTTCTCCGCAG]

[+] EMBL CNS08R8T             [ATGCTGGTGGTTTACGATCCCGAACCGGAGGTCGATTCCAACAGTCCAATATTACAGCAAAAGACGCCGTTGGACGAGCATAGCTACTTTTTCTCCGCAG]




>consensus_2976#1
ATGCTGGTGGTTTACGATCCCGAACCGGAGGTCGATTCCAACAGTCCAATATTACAGCAA
AAGACGCCGTTGGACGAGCATAGCTACTTTTTCTCCGCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2976#0      TTGTGAGTAGCTTTGGGCAATAACTATCCATGGGAATGTTAACAGATCGCAACATGTACG 60
consensus_2976#1      ------------------------------------------------------------
                                                                                  

consensus_2976#0      AAGAAGAGTACGATGAGGCTGCAGAGATGCTGGTGGTTTACGATCCCGAACCGGAGATCG 120
consensus_2976#1      --------------------------ATGCTGGTGGTTTACGATCCCGAACCGGAGGTCG 34
                                                ****************************** ***

consensus_2976#0      ATTATACCAGTTCAATCTTGCCGCAAAAGACGCCGTTGGACGAGCATAGCTACTTTTTCT 180
consensus_2976#1      ATTCCAACAGTCCAATATTACAGCAAAAGACGCCGTTGGACGAGCATAGCTACTTTTTCT 94
                      ***  * **** **** ** * **************************************

consensus_2976#0      CCGCAGAAAGGACCCTAGAACTGATTGCCATCGTTGAGAGTGAACCATTTCTATGGGATA 240
consensus_2976#1      CCGCAG------------------------------------------------------ 100
                      ******                                                      

consensus_2976#0      AGACGCAGCTCGATTACAAGAATGTAAAAATGACTGAAAATGCCTGGCGCATGGTAGCGT 300
consensus_2976#1      ------------------------------------------------------------
                                                                                  

consensus_2976#0      CCAAGATGGAGCTTGACGTGGAGGTGTGCAAGGAGAAGTGGACCTGTCTGCGGGCCCAGT 360
consensus_2976#1      ------------------------------------------------------------
                                                                                  

consensus_2976#0      TTCGCAAGCTGAAGCGAAGAATGATACAGTCAAGCCAGAATGGAACAGGCACGGACGAGA 420
consensus_2976#1      ------------------------------------------------------------
                                                                                  

consensus_2976#0      TATATCAACCATCCTGGTATGCGTACGAAGCAATGGCATTCCTAAACGAAGCAGTGGAAT 480
consensus_2976#1      ------------------------------------------------------------
                                                                                  

consensus_2976#0      GTGAAGGTGATACAAATACGGTTGATGGAAACAACACCCAATACTGCACAGCAAACACGA 540
consensus_2976#1      ------------------------------------------------------------
                                                                                  

consensus_2976#0      AATTGAAGCCACCGTTAGACGACATTCCCTTTCGCGGGAAAACACCCTTGAGCTTGTTTC 600
consensus_2976#1      ------------------------------------------------------------
                                                                                  

consensus_2976#0      TATCATTGAGGGCTTGCCTGTACTGTGGAATAGAGC 636
consensus_2976#1      ------------------------------------