cluster # 3001

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3001 cluster # 3001 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3001#0 length = 618 sequences # 1

consensus_3001#1 length = 264 sequences # 1

consensusID : consensus_3001#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 618
fasta sequence

                              [CCGGTGCCGACACTTTCGGGTCTGTGACGACGGTGTGTGTTGTTTCGAAAACGCTAGAAACACCGTGACACCCCCCCCCCCACCGCTCCCCCACTTCCCACCCACCAGGCTTGGCGGGGAGGGTTGTTGCTTGTGTGTGTACATACATAGCTACAGTCACATACAGGAAAGGTGAAAAGTGCGTGAAGTGAGTGCGTGCGTGGTGCCGGTGGATGCGCTTTTAACAGGAAGCGAAAGCGCTAGATTCCGGCGACCGGAAGTGGCACCACCACCGGCAAACCCGTCAGAGTGCAACCAGTGAGACCAGAATAGAAGAAGAAGAAGAAAGGGAGGAAAAAAAAACAAAACGAATTTGGGGGACCATCTCACCCCCCCCCCCCCCCCCAAACACACAGCCACAGGAAGTGCAATTCGAGTGGGGCGCGATTTTCATCGATTTTCGGCCCGGTGGTGGTGTGTGTGTGTGTGTAATACGTGTGCCGACCAAACACCGAGATGCTTCCAAACAGTGCGTGATACAGTGCGTGTGTGCGTGAGAGAGAGAGAGATAGCGAAAGTGTTTGTGTGTCTGCGTCGTTCTCGTGTGACAACACGTGTGTGCAATACACGCCTGCGAGC]

[+] EMBL BM593593             [CCGGTGCCGACACTTTCGGGTCTGTGACGACGGTGTGTGTTGTTTCGAAAACGCTAGAAACACCGTGACACCCCCCCCCCCACCGCTCCCCCACTTCCCACCCACCAGGCTTGGCGGGGAGGGTTGTTGCTTGTGTGTGTACATACATAGCTACAGTCACATACAGGAAAGGTGAAAAGTGCGTGAAGTGAGTGCGTGCGTGGTGCCGGTGGATGCGCTTTTAACAGGAAGCGAAAGCGCTAGATTCCGGCGACCGGAAGTGGCACCACCACCGGCAAACCCGTCAGAGTGCAACCAGTGAGACCAGAATAGAAGAAGAAGAAGAAAGGGAGGAAAAAAAAACAAAACGAATTTGGGGGACCATCTCACCCCCCCCCCCCCCCCCAAACACACAGCCACAGGAAGTGCAATTCGAGTGGGGCGCGATTTTCATCGATTTTCGGCCCGGTGGTGGTGTGTGTGTGTGTGTAATACGTGTGCCGACCAAACACCGAGATGCTTCCAAACAGTGCGTGATACAGTGCGTGTGTGCGTGAGAGAGAGAGAGATAGCGAAAGTGTTTGTGTGTCTGCGTCGTTCTCGTGTGACAACACGTGTGTGCAATACACGCCTGCGAGC]




>consensus_3001#0
CCGGTGCCGACACTTTCGGGTCTGTGACGACGGTGTGTGTTGTTTCGAAAACGCTAGAAA
CACCGTGACACCCCCCCCCCCACCGCTCCCCCACTTCCCACCCACCAGGCTTGGCGGGGA
GGGTTGTTGCTTGTGTGTGTACATACATAGCTACAGTCACATACAGGAAAGGTGAAAAGT
GCGTGAAGTGAGTGCGTGCGTGGTGCCGGTGGATGCGCTTTTAACAGGAAGCGAAAGCGC
TAGATTCCGGCGACCGGAAGTGGCACCACCACCGGCAAACCCGTCAGAGTGCAACCAGTG
AGACCAGAATAGAAGAAGAAGAAGAAAGGGAGGAAAAAAAAACAAAACGAATTTGGGGGA
CCATCTCACCCCCCCCCCCCCCCCCAAACACACAGCCACAGGAAGTGCAATTCGAGTGGG
GCGCGATTTTCATCGATTTTCGGCCCGGTGGTGGTGTGTGTGTGTGTGTAATACGTGTGC
CGACCAAACACCGAGATGCTTCCAAACAGTGCGTGATACAGTGCGTGTGTGCGTGAGAGA
GAGAGAGATAGCGAAAGTGTTTGTGTGTCTGCGTCGTTCTCGTGTGACAACACGTGTGTG
CAATACACGCCTGCGAGC

consensusID : consensus_3001#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 264
fasta sequence

                              [AGTTGCTTGTGTGTGTACATACATACCTACATACATAGCCACAGCCACATACAGGAAAGGGGAAAAGCGCGCGAAGTGAGAGCGTGCGTGGTGCCGGTGGAAGCGCTCTTAACAGGAAGCGAAAGCGCTAGATCCCGGCGACCGGAAGTGGCACCACCACCGGCAAACCCGCCAGAGTGCAACCAGCGAGACCAGAACAGAAGAAGAAGAAGAAAAGGAGGGAAAAAAACAAAACGAATAGGGGGGACCATCCCCCCCCAAACA]

[+] EMBL BX611445             [AGTTGCTTGTGTGTGTACATACATACCTACATACATAGCCACAGCCACATACAGGAAAGGGGAAAAGCGCGCGAAGTGAGAGCGTGCGTGGTGCCGGTGGAAGCGCTCTTAACAGGAAGCGAAAGCGCTAGATCCCGGCGACCGGAAGTGGCACCACCACCGGCAAACCCGCCAGAGTGCAACCAGCGAGACCAGAACAGAAGAAGAAGAAGAAAAGGAGGGAAAAAAACAAAACGAATAGGGGGGACCATCCCCCCCCAAACA]




>consensus_3001#1
AGTTGCTTGTGTGTGTACATACATACCTACATACATAGCCACAGCCACATACAGGAAAGG
GGAAAAGCGCGCGAAGTGAGAGCGTGCGTGGTGCCGGTGGAAGCGCTCTTAACAGGAAGC
GAAAGCGCTAGATCCCGGCGACCGGAAGTGGCACCACCACCGGCAAACCCGCCAGAGTGC
AACCAGCGAGACCAGAACAGAAGAAGAAGAAGAAAAGGAGGGAAAAAAACAAAACGAATA
GGGGGGACCATCCCCCCCCAAACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3001#0      CCGGTGCCGACACTTTCGGGTCTGTGACGACGGTGTGTGTTGTTTCGAAAACGCTAGAAA 60
consensus_3001#1      ------------------------------------------------------------
                                                                                  

consensus_3001#0      CACCGTGACACCCCCCCCCCCACCGCTCCCCCACTTCCCACCCACCAGGCTTGGCGGGGA 120
consensus_3001#1      ----------------------------------------------------AGTTGCTT 8
                                                                           *  *   

consensus_3001#0      GGGTTGTTGCTTGTGTGTGTACATACATAGCTACAGTCACATACAGGAAAGGTGAAAAGT 180
consensus_3001#1      GTGTGTGTACATACATACCTACATACATAGCCACAGCCACATACAGGAAAGGGGAAAAGC 68
                      * **   * * *   *   ************ **** *************** ****** 

consensus_3001#0      GCGTGAAGTGAGTGCGTGCGTGGTGCCGGTGGATGCGCTTTTAACAGGAAGCGAAAGCGC 240
consensus_3001#1      GCGCGAAGTGAGAGCGTGCGTGGTGCCGGTGGAAGCGCTCTTAACAGGAAGCGAAAGCGC 128
                      *** ******** ******************** ***** ********************

consensus_3001#0      TAGATTCCGGCGACCGGAAGTGGCACCACCACCGGCAAACCCGTCAGAGTGCAACCAGTG 300
consensus_3001#1      TAGATCCCGGCGACCGGAAGTGGCACCACCACCGGCAAACCCGCCAGAGTGCAACCAGCG 188
                      ***** ************************************* ************** *

consensus_3001#0      AGACCAGAATAGAAGAAGAAGAAGAAAGGGAGGAAAAAAAAACAAAACGAATTTGGGGGA 360
consensus_3001#1      AGACCAGAACAGAAGAAGAAGAAGAAAAGGAGGGAAAAAAA-CAAAACGAATAGGGGGGA 247
                      ********* ***************** ***** ******* **********  ******

consensus_3001#0      CCATCTCACCCCCCCCCCCCCCCCCAAACACACAGCCACAGGAAGTGCAATTCGAGTGGG 420
consensus_3001#1      CCATCCCCCCCCAAACA------------------------------------------- 264
                      ***** * ****   *                                            

consensus_3001#0      GCGCGATTTTCATCGATTTTCGGCCCGGTGGTGGTGTGTGTGTGTGTGTAATACGTGTGC 480
consensus_3001#1      ------------------------------------------------------------
                                                                                  

consensus_3001#0      CGACCAAACACCGAGATGCTTCCAAACAGTGCGTGATACAGTGCGTGTGTGCGTGAGAGA 540
consensus_3001#1      ------------------------------------------------------------
                                                                                  

consensus_3001#0      GAGAGAGATAGCGAAAGTGTTTGTGTGTCTGCGTCGTTCTCGTGTGACAACACGTGTGTG 600
consensus_3001#1      ------------------------------------------------------------
                                                                                  

consensus_3001#0      CAATACACGCCTGCGAGC 618
consensus_3001#1      ------------------