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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_301#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 705 fasta sequence
[CGACCCACGCGTCCGCGGACGCGTGGGCGCGCAGGAGATGGAGGAGATCATCAAGAACGGGTACGCGAACCTGTACGAGGGCGAGTACGTGCACGACATCGACCGCTATCCGGAGCTGCTCGAGGACCCGTTCAACGTGCGCTTCACCAAGAAGAAGGTGAACCAGTCGCGCAAGCGCAAGCGAAGAGACGCCACCGACGATGACGGTCCCGCTGGCGAGGTTTAGGTCGGCAGGACGTTTGGGCCAAAAACCTGCAGCAACCCCCTGTATCTCTGTGCGTGGGTGTGTGGGTGGATGTGCGTGTCCTGTGTGTCTGTTCACTGTCTAGTTGCGTAATAATGGCTGCAAGCGGAAGAGAGGCAAATTTCCTAAATGGGGATGCGTGTGTATATGTGTGTGTGTAGTAATGTGGCTCGAATGACAAATCCTCGCTATCCACTCGCTGTCTCGCTGTCTCTCTATCTCTTTCTCTCTCTGTCTCTCCCTCTGTCTCTGTTTGGGGAGAAGTCCGTCCGATTTTCTGTTGTTCTGTTTTCCATTAACCATTTCCCGCCCCATGTGGTTGTCTCTAACCTAGGGCCTCAGCGTCGTCCACACTCTAAACACACACACACACACTCACACACACAGCATAGAGAGATGAATGTAACATGCCGCCCATCACAGTACAGCTTTCGGCTGTTTTTAGTCGCAGACGCTCGGGG]
[+] EMBL BM638379 [CGACCCACGCGTCCGCGGACGCGTGGGCGCGCAGGAGATGGAGGAGATCATCAAGAACGGGTACGCGAACCTGTACGAGGGCGAGTACGTGCACGACATCGACCGCTATCCGGAGCTGCTCGAGGACCCGTTCAACGTGCGCTTCACCAAGAAGAAGGTGAACCAGTCGCGCAAGCGCAAGCGAAGAGACGCCACCGACGATGACGGTCCCGCTGGCGAGGTTTAGGTCGGCAGGACGTTTGGGCCAAAAACCTGCAGCAACCCCCTGTATCTCTGTGCGTGGGTGTGTGGGTGGATGTGCGTGTCCTGTGTGTCTGTTCACTGTCTAGTTGCGTAATAATGGCTGCAAGCGGAAGAGAGGCAAATTTCCTAAATGGGGATGCGTGTGTATATGTGTGTGTGTAGTAATGTGGCTCGAATGACAAATCCTCGCTATCCACTCGCTGTCTCGCTGTCTCTCTATCTCTTTCTCTCTCTGTCTCTCCCTCTGTCTCTGTTTGGGGAGAAGTCCGTCCGATTTTCTGTTGTTCTGTTTTCCATTAACCATTTCCCGCCCCATGTGGTTGTCTCTAACCTAGGGCCTCAGCGTCGTCCACACTCTAAACACACACACACACACTCACACACACAGCATAGAGAGATGAATGTAACATGCCGCCCATCACAGTACAGCTTTCGGCTGTTTTTAGTCGCAGACGCTCGGGG]
consensusID : consensus_301#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence
[CCGGGACCTGCTCCAGCTGCCGGACAGCTTCTTCGGCTCCAGCCTCAAGTCGGACCCGCTCGCGATTGGGCCGTTCCGGCTCGGCTCCGGCTCGGATCCACCGTTCGGGCACGGTATCATCGTGTCGCGCGTCGTCGCCGATGAGCCCGAGGGTGGCTACGCAATCGTGTCGAGCGTGCCGGCCGCGAACCCGATCTACCGGGACGTGTACACGTCCGTGTTTAACCGCACCCGGCTGCTGCCGTTCACGTTCGTCGTGCACAACTCGCTGCAGGACGCGTTCTTCTTCGTGAAGGAGGACTCGTGGCGGGCGGCCGAGGACCGGCAGCAGCTGAAGCGGCTGCAGGGCCAGGTCAACACCACCTTCCACGATCCGGTGTCGGCGGGCGGGCCGGGCGGCCCGGGCGGTCCCGGCGCGGACCGGTCGCCCGGCGGTGGGGCGAAACCGTCCGCCCACCAGGACGTGAAGATACACACGACCAACGCGATCATCAACCTGAAGTACGGCACGACGTCGGCGAAGGAGCGCCAGCGGCTGATGCATCACGCGAAGCTGCAGGCGGTGCGGAAGGCGTGGCACCGGGAGAAGGAGCTGCTGCGCAGCGGGCTCATCTCGAGCTACGAGTGGAACGCGCAGGAGATGGAGGAGATCATCAAGAACGGGTACGCGAACCTGTACG]
[+] EMBL BM583855 [CCGGGACCTGCTCCAGCTGCCGGACAGCTTCTTCGGCTCCAGCCTCAAGTCGGACCCGCTCGCGATTGGGCCGTTCCGGCTCGGCTCCGGCTCGGATCCACCGTTCGGGCACGGTATCATCGTGTCGCGCGTCGTCGCCGATGAGCCCGAGGGTGGCTACGCAATCGTGTCGAGCGTGCCGGCCGCGAACCCGATCTACCGGGACGTGTACACGTCCGTGTTTAACCGCACCCGGCTGCTGCCGTTCACGTTCGTCGTGCACAACTCGCTGCAGGACGCGTTCTTCTTCGTGAAGGAGGACTCGTGGCGGGCGGCCGAGGACCGGCAGCAGCTGAAGCGGCTGCAGGGCCAGGTCAACACCACCTTCCACGATCCGGTGTCGGCGGGCGGGCCGGGCGGCCCGGGCGGTCCCGGCGCGGACCGGTCGCCCGGCGGTGGGGCGAAACCGTCCGCCCACCAGGACGTGAAGATACACACGACCAACGCGATCATCAACCTGAAGTACGGCACGACGTCGGCGAAGGAGCGCCAGCGGCTGATGCATCACGCGAAGCTGCAGGCGGTGCGGAAGGCGTGGCACCGGGAGAAGGAGCTGCTGCGCAGCGGGCTCATCTCGAGCTACGAGTGGAACGCGCAGGAGATGGAGGAGATCATCAAGAACGGGTACGCGAACCTGTACG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_301#0 CGACCCACGCGTCCGCGGACGCGTGGGCGCGCAGGAGATGGAGGAGATCATCAAGAACGG 60
consensus_301#1 ---------------------------------------------------------CCG 3
* *
consensus_301#0 GTACGCGAACCTGTACGAGGGCGAGTACGTGCACGACATCGACCGCTATCCGGAGCTGCT 120
consensus_301#1 GGACCTGCTCCAGCTGCCGGACAGCTTCTT---CGGCTCCAGCCTCAAGTCGGACCCGCT 60
* ** * ** * ** * * * * ** * * ** * * **** * ***
consensus_301#0 CGAGGACCCGTTCAACGTGCGCTTCACCAAGAAGAAGGTGAACCAGTCGCGCAAGCGCAA 180
consensus_301#1 CGCG-ATTGGGCCGTTCCG-GCTCGGCTCCGGCTCGGATCCACCGTTCGGGCA--CGGTA 116
** * * * * * *** * * * * *** *** *** ** *
consensus_301#0 GCGAAGAGACGC-CACCGACGATGACGGTCCCGCTGGCGAGGTTTAGGTCG-GCAGGACG 238
consensus_301#1 TCATCGTGTCGCGCGTCGTCGCCGATGAGCCCGAGGGTGGCTACGCAATCGTGTCGAGCG 176
* * * *** * ** ** ** * **** ** * *** * * **
consensus_301#0 TTTGGGCCAAAAACCTGCAGCAACCCCCTGTATCTCTGTGCGTGGGTGTGTGGGTGGATG 298
consensus_301#1 TGCCGGCCGCGAACCCG----ATCTACCGGGACGTGTACACGTCCGTGTTTAACCGCACC 232
* **** **** * * * ** * * * * *** **** * * *
consensus_301#0 TGCGTGTCCTGTGTGTCTGTTCACTGTCTA-GTTGCGTAATAATGGCTGCAAGCGGAAGA 357
consensus_301#1 CGGCTGCTGC-CGTTCACGTTCGTCGTGCACAACTCGCTGCAGGACGCGTTCTTCTTCGT 291
* ** ** **** ** * ** * * *
consensus_301#0 GAGGCAAATTTCCTAAATGG-GGATGCGTGTGTATATGTGTGTGTGTAGTAATGTGGCTC 416
consensus_301#1 GAAGGAGGACTCGTGGCGGGCGGCCGAGGACCGGCAGCAGCTGAAGCGGCTGCAGGGCCA 351
** * * ** * ** ** * * * * * * ***
consensus_301#0 GAATGACAAATCCT--CGCTATCCACTCGCTGTCTCGCTGTCTCTCTATCTCTTTCTCTC 474
consensus_301#1 GGTCAACACCACCTTCCACGATCCGGT-GTCGGCGGGCGGGCCGGGCGGCCCGGGCGGTC 410
* *** *** * * **** * * * * ** * * * * * **
consensus_301#0 TCTGTCTCTCCCTCTGTCTCTGTTTGGGGAGAAGTCCGTCCGATTTTC----TGTTGTTC 530
consensus_301#1 CCGGCGCGGACCGGTCGCCCGGCGGTGGGGCGAAACCGTCCGCCCACCAGGACGTGAAGA 470
* * ** * * * * *** * ******* * **
consensus_301#0 TGTTTTCCATTAACC--ATTTCCCGCCCCATGT---GGTTGTCTCTAACCTAGG-GCCTC 584
consensus_301#1 TACACACGACCAACGCGATCATCAACCTGAAGTACGGCACGACGTCGGCGAAGGAGCGCC 530
* * * *** ** * ** * ** * * * * *** ** *
consensus_301#0 AGCGTCGTCCACACTCTAAACACACACACACACACTCACACACACAGCATAGAGAGATGA 644
consensus_301#1 AGCGGCTGATGCATCACGCGAAGCTGCAGGCGGTGCGGAAGGCGTGGCACCGGGAGAAGG 590
**** * ** * ** * * * *** * **** *
consensus_301#0 ATGTAACATGCCGCCCATCACAGTACAGCTTTCGGCTGTTTTTAGTCGCAGACGCTCGGG 704
consensus_301#1 AGCTGCTGCGCAGCG-GGCTCATCTCGAGCTACGAGTGGAACGCGCAGGAGATGGAGGAG 649
* * ** ** * ** * * ** ** * * *** * * *
consensus_301#0 G------------------------------ 705
consensus_301#1 ATCATCAAGAACGGGTACGCGAACCTGTACG 680
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||