These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_301#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 705 fasta sequence [CGACCCACGCGTCCGCGGACGCGTGGGCGCGCAGGAGATGGAGGAGATCATCAAGAACGGGTACGCGAACCTGTACGAGGGCGAGTACGTGCACGACATCGACCGCTATCCGGAGCTGCTCGAGGACCCGTTCAACGTGCGCTTCACCAAGAAGAAGGTGAACCAGTCGCGCAAGCGCAAGCGAAGAGACGCCACCGACGATGACGGTCCCGCTGGCGAGGTTTAGGTCGGCAGGACGTTTGGGCCAAAAACCTGCAGCAACCCCCTGTATCTCTGTGCGTGGGTGTGTGGGTGGATGTGCGTGTCCTGTGTGTCTGTTCACTGTCTAGTTGCGTAATAATGGCTGCAAGCGGAAGAGAGGCAAATTTCCTAAATGGGGATGCGTGTGTATATGTGTGTGTGTAGTAATGTGGCTCGAATGACAAATCCTCGCTATCCACTCGCTGTCTCGCTGTCTCTCTATCTCTTTCTCTCTCTGTCTCTCCCTCTGTCTCTGTTTGGGGAGAAGTCCGTCCGATTTTCTGTTGTTCTGTTTTCCATTAACCATTTCCCGCCCCATGTGGTTGTCTCTAACCTAGGGCCTCAGCGTCGTCCACACTCTAAACACACACACACACACTCACACACACAGCATAGAGAGATGAATGTAACATGCCGCCCATCACAGTACAGCTTTCGGCTGTTTTTAGTCGCAGACGCTCGGGG] [+] EMBL BM638379 [CGACCCACGCGTCCGCGGACGCGTGGGCGCGCAGGAGATGGAGGAGATCATCAAGAACGGGTACGCGAACCTGTACGAGGGCGAGTACGTGCACGACATCGACCGCTATCCGGAGCTGCTCGAGGACCCGTTCAACGTGCGCTTCACCAAGAAGAAGGTGAACCAGTCGCGCAAGCGCAAGCGAAGAGACGCCACCGACGATGACGGTCCCGCTGGCGAGGTTTAGGTCGGCAGGACGTTTGGGCCAAAAACCTGCAGCAACCCCCTGTATCTCTGTGCGTGGGTGTGTGGGTGGATGTGCGTGTCCTGTGTGTCTGTTCACTGTCTAGTTGCGTAATAATGGCTGCAAGCGGAAGAGAGGCAAATTTCCTAAATGGGGATGCGTGTGTATATGTGTGTGTGTAGTAATGTGGCTCGAATGACAAATCCTCGCTATCCACTCGCTGTCTCGCTGTCTCTCTATCTCTTTCTCTCTCTGTCTCTCCCTCTGTCTCTGTTTGGGGAGAAGTCCGTCCGATTTTCTGTTGTTCTGTTTTCCATTAACCATTTCCCGCCCCATGTGGTTGTCTCTAACCTAGGGCCTCAGCGTCGTCCACACTCTAAACACACACACACACACTCACACACACAGCATAGAGAGATGAATGTAACATGCCGCCCATCACAGTACAGCTTTCGGCTGTTTTTAGTCGCAGACGCTCGGGG] consensusID : consensus_301#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence [CCGGGACCTGCTCCAGCTGCCGGACAGCTTCTTCGGCTCCAGCCTCAAGTCGGACCCGCTCGCGATTGGGCCGTTCCGGCTCGGCTCCGGCTCGGATCCACCGTTCGGGCACGGTATCATCGTGTCGCGCGTCGTCGCCGATGAGCCCGAGGGTGGCTACGCAATCGTGTCGAGCGTGCCGGCCGCGAACCCGATCTACCGGGACGTGTACACGTCCGTGTTTAACCGCACCCGGCTGCTGCCGTTCACGTTCGTCGTGCACAACTCGCTGCAGGACGCGTTCTTCTTCGTGAAGGAGGACTCGTGGCGGGCGGCCGAGGACCGGCAGCAGCTGAAGCGGCTGCAGGGCCAGGTCAACACCACCTTCCACGATCCGGTGTCGGCGGGCGGGCCGGGCGGCCCGGGCGGTCCCGGCGCGGACCGGTCGCCCGGCGGTGGGGCGAAACCGTCCGCCCACCAGGACGTGAAGATACACACGACCAACGCGATCATCAACCTGAAGTACGGCACGACGTCGGCGAAGGAGCGCCAGCGGCTGATGCATCACGCGAAGCTGCAGGCGGTGCGGAAGGCGTGGCACCGGGAGAAGGAGCTGCTGCGCAGCGGGCTCATCTCGAGCTACGAGTGGAACGCGCAGGAGATGGAGGAGATCATCAAGAACGGGTACGCGAACCTGTACG] [+] EMBL BM583855 [CCGGGACCTGCTCCAGCTGCCGGACAGCTTCTTCGGCTCCAGCCTCAAGTCGGACCCGCTCGCGATTGGGCCGTTCCGGCTCGGCTCCGGCTCGGATCCACCGTTCGGGCACGGTATCATCGTGTCGCGCGTCGTCGCCGATGAGCCCGAGGGTGGCTACGCAATCGTGTCGAGCGTGCCGGCCGCGAACCCGATCTACCGGGACGTGTACACGTCCGTGTTTAACCGCACCCGGCTGCTGCCGTTCACGTTCGTCGTGCACAACTCGCTGCAGGACGCGTTCTTCTTCGTGAAGGAGGACTCGTGGCGGGCGGCCGAGGACCGGCAGCAGCTGAAGCGGCTGCAGGGCCAGGTCAACACCACCTTCCACGATCCGGTGTCGGCGGGCGGGCCGGGCGGCCCGGGCGGTCCCGGCGCGGACCGGTCGCCCGGCGGTGGGGCGAAACCGTCCGCCCACCAGGACGTGAAGATACACACGACCAACGCGATCATCAACCTGAAGTACGGCACGACGTCGGCGAAGGAGCGCCAGCGGCTGATGCATCACGCGAAGCTGCAGGCGGTGCGGAAGGCGTGGCACCGGGAGAAGGAGCTGCTGCGCAGCGGGCTCATCTCGAGCTACGAGTGGAACGCGCAGGAGATGGAGGAGATCATCAAGAACGGGTACGCGAACCTGTACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_301#0 CGACCCACGCGTCCGCGGACGCGTGGGCGCGCAGGAGATGGAGGAGATCATCAAGAACGG 60 consensus_301#1 ---------------------------------------------------------CCG 3 * * consensus_301#0 GTACGCGAACCTGTACGAGGGCGAGTACGTGCACGACATCGACCGCTATCCGGAGCTGCT 120 consensus_301#1 GGACCTGCTCCAGCTGCCGGACAGCTTCTT---CGGCTCCAGCCTCAAGTCGGACCCGCT 60 * ** * ** * ** * * * * ** * * ** * * **** * *** consensus_301#0 CGAGGACCCGTTCAACGTGCGCTTCACCAAGAAGAAGGTGAACCAGTCGCGCAAGCGCAA 180 consensus_301#1 CGCG-ATTGGGCCGTTCCG-GCTCGGCTCCGGCTCGGATCCACCGTTCGGGCA--CGGTA 116 ** * * * * * *** * * * * *** *** *** ** * consensus_301#0 GCGAAGAGACGC-CACCGACGATGACGGTCCCGCTGGCGAGGTTTAGGTCG-GCAGGACG 238 consensus_301#1 TCATCGTGTCGCGCGTCGTCGCCGATGAGCCCGAGGGTGGCTACGCAATCGTGTCGAGCG 176 * * * *** * ** ** ** * **** ** * *** * * ** consensus_301#0 TTTGGGCCAAAAACCTGCAGCAACCCCCTGTATCTCTGTGCGTGGGTGTGTGGGTGGATG 298 consensus_301#1 TGCCGGCCGCGAACCCG----ATCTACCGGGACGTGTACACGTCCGTGTTTAACCGCACC 232 * **** **** * * * ** * * * * *** **** * * * consensus_301#0 TGCGTGTCCTGTGTGTCTGTTCACTGTCTA-GTTGCGTAATAATGGCTGCAAGCGGAAGA 357 consensus_301#1 CGGCTGCTGC-CGTTCACGTTCGTCGTGCACAACTCGCTGCAGGACGCGTTCTTCTTCGT 291 * ** ** **** ** * ** * * * consensus_301#0 GAGGCAAATTTCCTAAATGG-GGATGCGTGTGTATATGTGTGTGTGTAGTAATGTGGCTC 416 consensus_301#1 GAAGGAGGACTCGTGGCGGGCGGCCGAGGACCGGCAGCAGCTGAAGCGGCTGCAGGGCCA 351 ** * * ** * ** ** * * * * * * *** consensus_301#0 GAATGACAAATCCT--CGCTATCCACTCGCTGTCTCGCTGTCTCTCTATCTCTTTCTCTC 474 consensus_301#1 GGTCAACACCACCTTCCACGATCCGGT-GTCGGCGGGCGGGCCGGGCGGCCCGGGCGGTC 410 * *** *** * * **** * * * * ** * * * * * ** consensus_301#0 TCTGTCTCTCCCTCTGTCTCTGTTTGGGGAGAAGTCCGTCCGATTTTC----TGTTGTTC 530 consensus_301#1 CCGGCGCGGACCGGTCGCCCGGCGGTGGGGCGAAACCGTCCGCCCACCAGGACGTGAAGA 470 * * ** * * * * *** * ******* * ** consensus_301#0 TGTTTTCCATTAACC--ATTTCCCGCCCCATGT---GGTTGTCTCTAACCTAGG-GCCTC 584 consensus_301#1 TACACACGACCAACGCGATCATCAACCTGAAGTACGGCACGACGTCGGCGAAGGAGCGCC 530 * * * *** ** * ** * ** * * * * *** ** * consensus_301#0 AGCGTCGTCCACACTCTAAACACACACACACACACTCACACACACAGCATAGAGAGATGA 644 consensus_301#1 AGCGGCTGATGCATCACGCGAAGCTGCAGGCGGTGCGGAAGGCGTGGCACCGGGAGAAGG 590 **** * ** * ** * * * *** * **** * consensus_301#0 ATGTAACATGCCGCCCATCACAGTACAGCTTTCGGCTGTTTTTAGTCGCAGACGCTCGGG 704 consensus_301#1 AGCTGCTGCGCAGCG-GGCTCATCTCGAGCTACGAGTGGAACGCGCAGGAGATGGAGGAG 649 * * ** ** * ** * * ** ** * * *** * * * consensus_301#0 G------------------------------ 705 consensus_301#1 ATCATCAAGAACGGGTACGCGAACCTGTACG 680 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||