cluster # 3010

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3010 cluster # 3010 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3010#0 length = 733 sequences # 1

consensus_3010#1 length = 527 sequences # 1

consensusID : consensus_3010#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 733
fasta sequence

                              [TTTTTTCGCTGCTCTGTCGTGCGAATGGTACATTTTCGGAAGGAAGTGAATATATTTCGTCAAGTGGTGATTCGTACATAAATATATATATCCTTTCGTGCTACCCAGCGCAGAAACTGTTTAGCGCTGAGTTTCATTGCCATTTGTTCAAATCAATTGTATCATGCGTACGCTTCGTTTACCGTACTTCGCATAGAAAGAGAGAAGCGGAGAGAAAAGAAAGGAAACCAGACAGAAAAACGTATAGTGAAAGCTGCACGGCGCAACTTCCTCCACCGTGTGTGAAAAGCTGCAGCGGGGGCGTACTCACAATCAACTACGAAAGCCATGGCGGAAATCGGCGATGATGTGCCGTTGGCCGATAGGATCCGCGGCAAGACCGTGCATCAGCGCGGTGCTCCCGAAAGTGTGGAGTCCAACAGCTCGACAAGCTCCGGCAGCAGCGAGCAGGACGGAGAGGACGGAGGAACGTACATGGACAACAGCCCGTGGGTGTTTATGCCCGAGCCGCTGTTTATAAAAATCTTTCTTCAACTTCGAGCGCGCGATGTCCTGAACGCTGGCCAATGCTGCAAACGTTGGTACAAACTGTCCAAAGATGATTACATCTGGCGAAAGTACTTCCGCCAGGAGTTTAACGTAGACCCATCGATCCAGCTGAAACGAGGTGCGGAAAGCTGGCGGGCCGAGTACCGACGCTTGACCAACAATGTGCCGATGGTAATGACGGATG]

[+] EMBL CNS09QZP             [TTTTTTCGCTGCTCTGTCGTGCGAATGGTACATTTTCGGAAGGAAGTGAATATATTTCGTCAAGTGGTGATTCGTACATAAATATATATATCCTTTCGTGCTACCCAGCGCAGAAACTGTTTAGCGCTGAGTTTCATTGCCATTTGTTCAAATCAATTGTATCATGCGTACGCTTCGTTTACCGTACTTCGCATAGAAAGAGAGAAGCGGAGAGAAAAGAAAGGAAACCAGACAGAAAAACGTATAGTGAAAGCTGCACGGCGCAACTTCCTCCACCGTGTGTGAAAAGCTGCAGCGGGGGCGTACTCACAATCAACTACGAAAGCCATGGCGGAAATCGGCGATGATGTGCCGTTGGCCGATAGGATCCGCGGCAAGACCGTGCATCAGCGCGGTGCTCCCGAAAGTGTGGAGTCCAACAGCTCGACAAGCTCCGGCAGCAGCGAGCAGGACGGAGAGGACGGAGGAACGTACATGGACAACAGCCCGTGGGTGTTTATGCCCGAGCCGCTGTTTATAAAAATCTTTCTTCAACTTCGAGCGCGCGATGTCCTGAACGCTGGCCAATGCTGCAAACGTTGGTACAAACTGTCCAAAGATGATTACATCTGGCGAAAGTACTTCCGCCAGGAGTTTAACGTAGACCCATCGATCCAGCTGAAACGAGGTGCGGAAAGCTGGCGGGCCGAGTACCGACGCTTGACCAACAATGTGCCGATGGTAATGACGGATG]




>consensus_3010#0
TTTTTTCGCTGCTCTGTCGTGCGAATGGTACATTTTCGGAAGGAAGTGAATATATTTCGT
CAAGTGGTGATTCGTACATAAATATATATATCCTTTCGTGCTACCCAGCGCAGAAACTGT
TTAGCGCTGAGTTTCATTGCCATTTGTTCAAATCAATTGTATCATGCGTACGCTTCGTTT
ACCGTACTTCGCATAGAAAGAGAGAAGCGGAGAGAAAAGAAAGGAAACCAGACAGAAAAA
CGTATAGTGAAAGCTGCACGGCGCAACTTCCTCCACCGTGTGTGAAAAGCTGCAGCGGGG
GCGTACTCACAATCAACTACGAAAGCCATGGCGGAAATCGGCGATGATGTGCCGTTGGCC
GATAGGATCCGCGGCAAGACCGTGCATCAGCGCGGTGCTCCCGAAAGTGTGGAGTCCAAC
AGCTCGACAAGCTCCGGCAGCAGCGAGCAGGACGGAGAGGACGGAGGAACGTACATGGAC
AACAGCCCGTGGGTGTTTATGCCCGAGCCGCTGTTTATAAAAATCTTTCTTCAACTTCGA
GCGCGCGATGTCCTGAACGCTGGCCAATGCTGCAAACGTTGGTACAAACTGTCCAAAGAT
GATTACATCTGGCGAAAGTACTTCCGCCAGGAGTTTAACGTAGACCCATCGATCCAGCTG
AAACGAGGTGCGGAAAGCTGGCGGGCCGAGTACCGACGCTTGACCAACAATGTGCCGATG
GTAATGACGGATG

consensusID : consensus_3010#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 527
fasta sequence

                              [GAATCGCCCGAGGNGTTTACCGTACTTCGCATAGAAAGAGAGAAGCGGAGAGAAAAGAAAGGAAACCAGACAGAAAAACGATAGTGAAAGTGCACGGCGCAACTTCCTCCACCGTGTGTGAAAAGCTGCAGCGGGGGCGTACTCACAATCAACTACGAAAGCCATGGCGGAAATCGGCGATGATGTGCCGTTGGCCGATAGGATCCGCGGCAAGACCGTGCATCAGCGCGGTGCTCGCGAAAGTGTGGAGTCCAACAGCTCGACAAGCTCCGGCAGCAGCGAGCAGGACGGAGAGGACGGAGGAACGTACATGGACAACAGCCCGTGGGTGTTTATGCCCGAGCCGCTGTTTATAAAAATATTTCTTCAACTTCGAGCGCGCGATGTCCTGAACGCTGGCCAATGCTGCAAACGTTGGTACAAACTGTCCAAAGATGATTACATCTGGCGAAAGTACTTCCGCCAGGAGTTTAACGTAGACCCATCGATCCAGCTGAAACGAGGAGCGGAAAGCTGGCGGGCCGAGT]

[+] EMBL AL932549             [GAATCGCCCGAGGNGTTTACCGTACTTCGCATAGAAAGAGAGAAGCGGAGAGAAAAGAAAGGAAACCAGACAGAAAAACGATAGTGAAAGTGCACGGCGCAACTTCCTCCACCGTGTGTGAAAAGCTGCAGCGGGGGCGTACTCACAATCAACTACGAAAGCCATGGCGGAAATCGGCGATGATGTGCCGTTGGCCGATAGGATCCGCGGCAAGACCGTGCATCAGCGCGGTGCTCGCGAAAGTGTGGAGTCCAACAGCTCGACAAGCTCCGGCAGCAGCGAGCAGGACGGAGAGGACGGAGGAACGTACATGGACAACAGCCCGTGGGTGTTTATGCCCGAGCCGCTGTTTATAAAAATATTTCTTCAACTTCGAGCGCGCGATGTCCTGAACGCTGGCCAATGCTGCAAACGTTGGTACAAACTGTCCAAAGATGATTACATCTGGCGAAAGTACTTCCGCCAGGAGTTTAACGTAGACCCATCGATCCAGCTGAAACGAGGAGCGGAAAGCTGGCGGGCCGAGT]




>consensus_3010#1
GAATCGCCCGAGGNGTTTACCGTACTTCGCATAGAAAGAGAGAAGCGGAGAGAAAAGAAA
GGAAACCAGACAGAAAAACGATAGTGAAAGTGCACGGCGCAACTTCCTCCACCGTGTGTG
AAAAGCTGCAGCGGGGGCGTACTCACAATCAACTACGAAAGCCATGGCGGAAATCGGCGA
TGATGTGCCGTTGGCCGATAGGATCCGCGGCAAGACCGTGCATCAGCGCGGTGCTCGCGA
AAGTGTGGAGTCCAACAGCTCGACAAGCTCCGGCAGCAGCGAGCAGGACGGAGAGGACGG
AGGAACGTACATGGACAACAGCCCGTGGGTGTTTATGCCCGAGCCGCTGTTTATAAAAAT
ATTTCTTCAACTTCGAGCGCGCGATGTCCTGAACGCTGGCCAATGCTGCAAACGTTGGTA
CAAACTGTCCAAAGATGATTACATCTGGCGAAAGTACTTCCGCCAGGAGTTTAACGTAGA
CCCATCGATCCAGCTGAAACGAGGAGCGGAAAGCTGGCGGGCCGAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3010#0      TTTTTTCGCTGCTCTGTCGTGCGAATGGTACATTTTCGGAAGGAAGTGAATATATTTCGT 60
consensus_3010#1      ------------------------------------------------------------
                                                                                  

consensus_3010#0      CAAGTGGTGATTCGTACATAAATATATATATCCTTTCGTGCTACCCAGCGCAGAAACTGT 120
consensus_3010#1      ------------------------------------------------------------
                                                                                  

consensus_3010#0      TTAGCGCTGAGTTTCATTGCCATTTGTTCAAATCAATTGTATCATGCGTACGCTTCGTTT 180
consensus_3010#1      ------------------------------------------GAATCGCCCGAGGNGTTT 18
                                                                 *  **  **    ****

consensus_3010#0      ACCGTACTTCGCATAGAAAGAGAGAAGCGGAGAGAAAAGAAAGGAAACCAGACAGAAAAA 240
consensus_3010#1      ACCGTACTTCGCATAGAAAGAGAGAAGCGGAGAGAAAAGAAAGGAAACCAGACAGAAAAA 78
                      ************************************************************

consensus_3010#0      CGTATAGTGAAAGCTGCACGGCGCAACTTCCTCCACCGTGTGTGAAAAGCTGCAGCGGGG 300
consensus_3010#1      CG-ATAGTGAAAG-TGCACGGCGCAACTTCCTCCACCGTGTGTGAAAAGCTGCAGCGGGG 136
                      ** ********** **********************************************

consensus_3010#0      GCGTACTCACAATCAACTACGAAAGCCATGGCGGAAATCGGCGATGATGTGCCGTTGGCC 360
consensus_3010#1      GCGTACTCACAATCAACTACGAAAGCCATGGCGGAAATCGGCGATGATGTGCCGTTGGCC 196
                      ************************************************************

consensus_3010#0      GATAGGATCCGCGGCAAGACCGTGCATCAGCGCGGTGCTCCCGAAAGTGTGGAGTCCAAC 420
consensus_3010#1      GATAGGATCCGCGGCAAGACCGTGCATCAGCGCGGTGCTCGCGAAAGTGTGGAGTCCAAC 256
                      **************************************** *******************

consensus_3010#0      AGCTCGACAAGCTCCGGCAGCAGCGAGCAGGACGGAGAGGACGGAGGAACGTACATGGAC 480
consensus_3010#1      AGCTCGACAAGCTCCGGCAGCAGCGAGCAGGACGGAGAGGACGGAGGAACGTACATGGAC 316
                      ************************************************************

consensus_3010#0      AACAGCCCGTGGGTGTTTATGCCCGAGCCGCTGTTTATAAAAATCTTTCTTCAACTTCGA 540
consensus_3010#1      AACAGCCCGTGGGTGTTTATGCCCGAGCCGCTGTTTATAAAAATATTTCTTCAACTTCGA 376
                      ******************************************** ***************

consensus_3010#0      GCGCGCGATGTCCTGAACGCTGGCCAATGCTGCAAACGTTGGTACAAACTGTCCAAAGAT 600
consensus_3010#1      GCGCGCGATGTCCTGAACGCTGGCCAATGCTGCAAACGTTGGTACAAACTGTCCAAAGAT 436
                      ************************************************************

consensus_3010#0      GATTACATCTGGCGAAAGTACTTCCGCCAGGAGTTTAACGTAGACCCATCGATCCAGCTG 660
consensus_3010#1      GATTACATCTGGCGAAAGTACTTCCGCCAGGAGTTTAACGTAGACCCATCGATCCAGCTG 496
                      ************************************************************

consensus_3010#0      AAACGAGGTGCGGAAAGCTGGCGGGCCGAGTACCGACGCTTGACCAACAATGTGCCGATG 720
consensus_3010#1      AAACGAGGAGCGGAAAGCTGGCGGGCCGAGT----------------------------- 527
                      ******** **********************                             

consensus_3010#0      GTAATGACGGATG 733
consensus_3010#1      -------------