These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3030#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 900 fasta sequence [GAGGCCAGATCGCCACGAGGGTAATTTTAAAATGAAAAAAAACAAACGAGCTAAGCTATTACTACCATACTGCTACACTGAAGTGTTCTCTCTTTAACGCGCGAGAATGAAACGTAAAGTGCACTCTGAACAGAAATCTGAACCGGTAGTTATTAGTTAAGGGGAAACTACCACAAACTATAGCGCTGTAATCTATGTAACACGTAAACGACAACAAGACGAAAAGCTACGCACCGAAAAGAAAAGCATAAAAGACCTATTTTTAGAGATTTATATACAAAAACAAACACGCAAAGATGGATGCATATATATACATTTGAACGATGCAACGAATCGTCGTCAATCTACTACATCGAGCTGCTTTTATGTGCGAACAGACACTTGCAGAAGCTAATGAAGTGAATGATTTATTGGTAGTAGGGTGCATTTTACCTACCACTGCAATGTTGCAATTACATGTATTTTGTACTATCGCTCTCCTTGCCACCGCTTGTCTTTCTTTTGTATAATCATACCCATTTCGTTTGGTAAATGTTGTTGTTAGATTTTTTAAGTTTGGGCTTAAAACTTCTTGCAACGAATGTGTAGCAACAGTTCGGTGCTGTCGGAGTTTACCTAATCAAGTGGGAAAGGGAGAGAAAGGGTCAAAGCAACTCTTTCCGTTTTCGTTCGTAAAATGAACTGAACCGGAACCGGGTGCGTGTGAAAAATTACCCCGGTGAGATTATGCTATAGTTTTGGTTAAAGGAAGGAACACTGGTTTTTGCACCATTGCACTTCTTCCTTCATTCATTACTCGTACNTCACCCTTTGCTTCCTGGCTGGCTTCCCATTCANTCCGGGAAGACGGTTTCACCAGGGTTTCCACAGAAAGTCGAAGNTANAGTGAGATCCCCTTCC] [+] EMBL BX467633 [GAGGCCAGATCGCCACGAGGGTAATTTTAAAATGAAAAAAAACAAACGAGCTAAGCTATTACTACCATACTGCTACACTGAAGTGTTCTCTCTTTAACGCGCGAGAATGAAACGTAAAGTGCACTCTGAACAGAAATCTGAACCGGTAGTTATTAGTTAAGGGGAAACTACCACAAACTATAGCGCTGTAATCTATGTAACACGTAAACGACAACAAGACGAAAAGCTACGCACCGAAAAGAAAAGCATAAAAGACCTATTTTTAGAGATTTATATACAAAAACAAACACGCAAAGATGGATGCATATATATACATTTGAACGATGCAACGAATCGTCGTCAATCTACTACATCGAGCTGCTTTTATGTGCGAACAGACACTTGCAGAAGCTAATGAAGTGAATGATTTATTGGTAGTAGGGTGCATTTTACCTACCACTGCAATGTTGCAATTACATGTATTTTGTACTATCGCTCTCCTTGCCACCGCTTGTCTTTCTTTTGTATAATCATACCCATTTCGTTTGGTAAATGTTGTTGTTAGATTTTTTAAGTTTGGGCTTAAAACTTCTTGCAACGAATGTGTAGCAACAGTTCGGTGCTGTCGGAGTTTACCTAATCAAGTGGGAAAGGGAGAGAAAGGGTCAAAGCAACTCTTTCCGTTTTCGTTCGTAAAATGAACTGAACCGGAACCGGGTGCGTGTGAAAAATTACCCCGGTGAGATTATGCTATAGTTTTGGTTAAAGGAAGGAACACTGGTTTTTGCACCATTGCACTTCTTCCTTCATTCATTACTCGTACNTCACCCTTTGCTTCCTGGCTGGCTTCCCATTCANTCCGGGAAGACGGTTTCACCAGGGTTTCCACAGAAAGTCGAAGNTANAGTGAGATCCCCTTCC] consensusID : consensus_3030#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 522 fasta sequence [CCCCGAGGTTATCTGTAAAAGAATACACCTTCTCTTATATTATAGTACTTTATAGCTTGCTTACCACTTTCATTCACACAATGTTTCATTTCTTGTCCATTGCGAGAGCAAAAAAATTCATTTAAATTGAATGCGCTGTCTCGCAACACCAGGCGCCTCCACGCTGTTGGAAGCAATGTCCAAAAAAACAAAGCAAAAATGTACTAATATGGAATAGCACTTAACTATGTACATAACCGGTATAGAAGATATTCCCTTTATTCTGGTGCAACATCAGAAGCAGCAAAATCAGTGTTAAAGTAAATTTTAAAATGAAAAAAAAAAACGAGCTAAGCTATTACTACCATACTGCTACACTGAAGTGTTCTCTCTTTAACGCGCGAGAATGAAACGTAAAGTGCACTCTGAACAGAAATCTGAACCGGTAGTTATTAGTTAAGGGGAAACTACCACAAACTATAGCGCTGTAATCTATGTAACACGTAAACGACAACAAGACGAAAAGCTACGCACCGAAACAGA] [+] EMBL AL932258 [CCCCGAGGTTATCTGTAAAAGAATACACCTTCTCTTATATTATAGTACTTTATAGCTTGCTTACCACTTTCATTCACACAATGTTTCATTTCTTGTCCATTGCGAGAGCAAAAAAATTCATTTAAATTGAATGCGCTGTCTCGCAACACCAGGCGCCTCCACGCTGTTGGAAGCAATGTCCAAAAAAACAAAGCAAAAATGTACTAATATGGAATAGCACTTAACTATGTACATAACCGGTATAGAAGATATTCCCTTTATTCTGGTGCAACATCAGAAGCAGCAAAATCAGTGTTAAAGTAAATTTTAAAATGAAAAAAAAAAACGAGCTAAGCTATTACTACCATACTGCTACACTGAAGTGTTCTCTCTTTAACGCGCGAGAATGAAACGTAAAGTGCACTCTGAACAGAAATCTGAACCGGTAGTTATTAGTTAAGGGGAAACTACCACAAACTATAGCGCTGTAATCTATGTAACACGTAAACGACAACAAGACGAAAAGCTACGCACCGAAACAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3030#0 ----GAGGCCAGATCGCCACGAGGGTAATTT-TAAAATGAAAAAAAACAAACGAGCTAAG 55 consensus_3030#1 CCCCGAGGTTATCTGTAAAAGAATACACCTTCTCTTATATTATAGTACTTTATAGCTTGC 60 **** * * * ** * ** * ** * * ** **** consensus_3030#0 CTATTACTACCATACTGCTACACTGAAGTGTTCTCTCTTTAACGCGCGAGAATGAAACGT 115 consensus_3030#1 TTACCACTTTCATTCA--CACAATGTTTCATTTCTTGTCCATTGCG--AGAGCAAAA--- 113 ** *** *** * *** ** ** * * * *** *** *** consensus_3030#0 AAAGTGCACTCTGAACAGAAATCTGAACCGGTAGTTATTAGTTAAGGGGAAACTACCACA 175 consensus_3030#1 -AAATTCATTTAAATTGAATGCGCTGTCTCGCAAC-ACCAGGCGCCTCCACGCTGTTGGA 171 ** * ** * * * * * * * ** * ** * consensus_3030#0 AACTATAGCGCTGTAATCTATGTAACACGTAAACGACAACAAGACGAAAAGCTACGCACC 235 consensus_3030#1 AGCAATGTCCAAAAAAACAAAGCAA-AAATGTACTAATATGGAAT-AGCACTTAACTATG 229 * * ** * ** * * * ** * * ** * * * * * ** * consensus_3030#0 GAAAAGAAAAGCATAAAAGACCTATTTTTAGAGATTTATATACAAAAACAAACACGCAAA 295 consensus_3030#1 TACATAACCGGTATAGAAGATATTCCCTT---TATTCTGGTGCAACATCAGAAGCAGCAA 286 * * * * *** **** * ** *** * *** * ** * * ** consensus_3030#0 GATGGATGCATATATATACATTTGAACGATGCAACGAATCGTCGTCAATCTACTACATCG 355 consensus_3030#1 AATCAGTGTTAAAGTAAATTTTAAAATGAAAAAAAAAAACGA-GCTAAGCTATTACTACC 345 ** ** * ** * ** ** ** ** ** ** * ** *** *** * consensus_3030#0 AGCTGCTTTTATGTGCGAACAGACACTTGCAGAAGCTAATGAAGTGAATGATTTATTGGT 415 consensus_3030#1 A--TACTGCTACACTGAAGTGTTCTCTCTTTAACGCGCGAGAATGAAACG---------- 393 * * ** ** * * ** * ** *** ** * consensus_3030#0 AGTAGGGTGCATTTTACCTACCACTGCAATGTTGCAATTACATGT--ATTTTGTACTATC 473 consensus_3030#1 --TAAAGTGCACTCTGAACAGAAATCTGAACCGGTAGTTATTAGTTAAGGGGAAACTACC 451 ** ***** * * * * * * * * *** ** * **** * consensus_3030#0 GCTCTCCTTGCCACCGCTTGTCTTTCTTTTGTATAATC-ATACCCATTTCGTTTGGTAAA 532 consensus_3030#1 ACAAACTATAGCGCTG-TAATCTATGTAACACGTAAACGACAACAAGACGAAAAGCTACG 510 * * * * * * * *** * * *** * * * * * * ** consensus_3030#0 TGTTGTTGTTAGATTTTTTAAGTTTGGGCTTAAAACTTCTTGCAACGAATGTGTAGCAAC 592 consensus_3030#1 CACCGAAAC-AGA----------------------------------------------- 522 * *** consensus_3030#0 AGTTCGGTGCTGTCGGAGTTTACCTAATCAAGTGGGAAAGGGAGAGAAAGGGTCAAAGCA 652 consensus_3030#1 ------------------------------------------------------------ consensus_3030#0 ACTCTTTCCGTTTTCGTTCGTAAAATGAACTGAACCGGAACCGGGTGCGTGTGAAAAATT 712 consensus_3030#1 ------------------------------------------------------------ consensus_3030#0 ACCCCGGTGAGATTATGCTATAGTTTTGGTTAAAGGAAGGAACACTGGTTTTTGCACCAT 772 consensus_3030#1 ------------------------------------------------------------ consensus_3030#0 TGCACTTCTTCCTTCATTCATTACTCGTACNTCACCCTTTGCTTCCTGGCTGGCTTCCCA 832 consensus_3030#1 ------------------------------------------------------------ consensus_3030#0 TTCANTCCGGGAAGACGGTTTCACCAGGGTTTCCACAGAAAGTCGAAGNTANAGTGAGAT 892 consensus_3030#1 ------------------------------------------------------------ consensus_3030#0 CCCCTTCC 900 consensus_3030#1 -------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||