cluster # 3042

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Anopheles gambiae
cluster # 3042 cluster # 3042 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3042#0 length = 510 sequences # 1

consensus_3042#1 length = 274 sequences # 1

consensusID : consensus_3042#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 510
fasta sequence

                              [CCGCCCACGCGTCCGGTACCAGTCGGATCGGAGAAGGACGTGATTGTTGGGCTGCTTTGGTGGAACGCGTCGGTCGCTCAGTACGCTAGACCAGTATGACATTCTTTCAAGCGCTTGAAAAATCCTCCGCGGTGGAGTTGTACACCTACCTGACGCTGATCCTAGTATGTGTCCTGTTGTACATCTTCTCGGACTATCTGAAGATATGTGCGCTCGCGTTTCGTTTACCCGGTCCGAAGTCCTATCCCATCATTGGCAACTGCTTGGACATTGCCCGAAAGGATCTTATTACGCGTGAGATGGCCCAGGCGTACAAAAACTATGGCCCGTTGGCGCGCGTTTGGATATTTGTCTTCCCAATGTTTGTCGTGTTCGATCCGAACGATCTGAAGGTGATCCTGTCCTCGAAGAAGCACACCAACAAATCCATGTTTTACAAGCTGCTGCACAACTTCCTGGGCCGTGGACTGATCACCAGCAGTGGACACAAATGGGAGCTCGCATCGGAAG]

[+] EMBL BM641756             [CCGCCCACGCGTCCGGTACCAGTCGGATCGGAGAAGGACGTGATTGTTGGGCTGCTTTGGTGGAACGCGTCGGTCGCTCAGTACGCTAGACCAGTATGACATTCTTTCAAGCGCTTGAAAAATCCTCCGCGGTGGAGTTGTACACCTACCTGACGCTGATCCTAGTATGTGTCCTGTTGTACATCTTCTCGGACTATCTGAAGATATGTGCGCTCGCGTTTCGTTTACCCGGTCCGAAGTCCTATCCCATCATTGGCAACTGCTTGGACATTGCCCGAAAGGATCTTATTACGCGTGAGATGGCCCAGGCGTACAAAAACTATGGCCCGTTGGCGCGCGTTTGGATATTTGTCTTCCCAATGTTTGTCGTGTTCGATCCGAACGATCTGAAGGTGATCCTGTCCTCGAAGAAGCACACCAACAAATCCATGTTTTACAAGCTGCTGCACAACTTCCTGGGCCGTGGACTGATCACCAGCAGTGGACACAAATGGGAGCTCGCATCGGAAG]




>consensus_3042#0
CCGCCCACGCGTCCGGTACCAGTCGGATCGGAGAAGGACGTGATTGTTGGGCTGCTTTGG
TGGAACGCGTCGGTCGCTCAGTACGCTAGACCAGTATGACATTCTTTCAAGCGCTTGAAA
AATCCTCCGCGGTGGAGTTGTACACCTACCTGACGCTGATCCTAGTATGTGTCCTGTTGT
ACATCTTCTCGGACTATCTGAAGATATGTGCGCTCGCGTTTCGTTTACCCGGTCCGAAGT
CCTATCCCATCATTGGCAACTGCTTGGACATTGCCCGAAAGGATCTTATTACGCGTGAGA
TGGCCCAGGCGTACAAAAACTATGGCCCGTTGGCGCGCGTTTGGATATTTGTCTTCCCAA
TGTTTGTCGTGTTCGATCCGAACGATCTGAAGGTGATCCTGTCCTCGAAGAAGCACACCA
ACAAATCCATGTTTTACAAGCTGCTGCACAACTTCCTGGGCCGTGGACTGATCACCAGCA
GTGGACACAAATGGGAGCTCGCATCGGAAG

consensusID : consensus_3042#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 274
fasta sequence

                              [GGCACTGTGCGCAGCATCCGTAAAAATTCTCGCCACATTTGTGCAAAACCTTCCGGTGCAGTCCGGGAGCAGTCGGAACTCGCCAACCCGGTAGTAGTTAGCGGATCCCCGTACCAGTCGGATCGGAGTAGGACGTGATTGCTGGGCTGCTTCGGTGGAACGCGTCGGTCGCGCAGTACGCTAGATACCAGTATGACATTCTTCCAAGCGCTTGAAAAATCTTCCGCGGTGGAGTTGTACACCTACCTGACGCTGATCCTAGTATGTTTCCTTT]

[+] EMBL CNS090P5             [GGCACTGTGCGCAGCATCCGTAAAAATTCTCGCCACATTTGTGCAAAACCTTCCGGTGCAGTCCGGGAGCAGTCGGAACTCGCCAACCCGGTAGTAGTTAGCGGATCCCCGTACCAGTCGGATCGGAGTAGGACGTGATTGCTGGGCTGCTTCGGTGGAACGCGTCGGTCGCGCAGTACGCTAGATACCAGTATGACATTCTTCCAAGCGCTTGAAAAATCTTCCGCGGTGGAGTTGTACACCTACCTGACGCTGATCCTAGTATGTTTCCTTT]




>consensus_3042#1
GGCACTGTGCGCAGCATCCGTAAAAATTCTCGCCACATTTGTGCAAAACCTTCCGGTGCA
GTCCGGGAGCAGTCGGAACTCGCCAACCCGGTAGTAGTTAGCGGATCCCCGTACCAGTCG
GATCGGAGTAGGACGTGATTGCTGGGCTGCTTCGGTGGAACGCGTCGGTCGCGCAGTACG
CTAGATACCAGTATGACATTCTTCCAAGCGCTTGAAAAATCTTCCGCGGTGGAGTTGTAC
ACCTACCTGACGCTGATCCTAGTATGTTTCCTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3042#0      ------------------------------------------------------------
consensus_3042#1      GGCACTGTGCGCAGCATCCGTAAAAATTCTCGCCACATTTGTGCAAAACCTTCCGGTGCA 60
                                                                                  

consensus_3042#0      ----------------------------------CCGCCCACGCGTCCG-GTACCAGTCG 25
consensus_3042#1      GTCCGGGAGCAGTCGGAACTCGCCAACCCGGTAGTAGTTAGCGGATCCCCGTACCAGTCG 120
                                                          *    **  ***  **********

consensus_3042#0      GATCGGAGAAGGACGTGATTGTTGGGCTGCTTTGGTGGAACGCGTCGGTCGCTCAGTACG 85
consensus_3042#1      GATCGGAGTAGGACGTGATTGCTGGGCTGCTTCGGTGGAACGCGTCGGTCGCGCAGTACG 180
                      ******** ************ ********** ******************* *******

consensus_3042#0      CTAGA--CCAGTATGACATTCTTTCAAGCGCTTGAAAAATCCTCCGCGGTGGAGTTGTAC 143
consensus_3042#1      CTAGATACCAGTATGACATTCTTCCAAGCGCTTGAAAAATCTTCCGCGGTGGAGTTGTAC 240
                      *****  **************** ***************** ******************

consensus_3042#0      ACCTACCTGACGCTGATCCTAGTATGTGTCCTGTTGTACATCTTCTCGGACTATCTGAAG 203
consensus_3042#1      ACCTACCTGACGCTGATCCTAGTATGTTTCCTTT-------------------------- 274
                      *************************** **** *                          

consensus_3042#0      ATATGTGCGCTCGCGTTTCGTTTACCCGGTCCGAAGTCCTATCCCATCATTGGCAACTGC 263
consensus_3042#1      ------------------------------------------------------------
                                                                                  

consensus_3042#0      TTGGACATTGCCCGAAAGGATCTTATTACGCGTGAGATGGCCCAGGCGTACAAAAACTAT 323
consensus_3042#1      ------------------------------------------------------------
                                                                                  

consensus_3042#0      GGCCCGTTGGCGCGCGTTTGGATATTTGTCTTCCCAATGTTTGTCGTGTTCGATCCGAAC 383
consensus_3042#1      ------------------------------------------------------------
                                                                                  

consensus_3042#0      GATCTGAAGGTGATCCTGTCCTCGAAGAAGCACACCAACAAATCCATGTTTTACAAGCTG 443
consensus_3042#1      ------------------------------------------------------------
                                                                                  

consensus_3042#0      CTGCACAACTTCCTGGGCCGTGGACTGATCACCAGCAGTGGACACAAATGGGAGCTCGCA 503
consensus_3042#1      ------------------------------------------------------------
                                                                                  

consensus_3042#0      TCGGAAG 510
consensus_3042#1      -------