cluster # 3113

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Anopheles gambiae
cluster # 3113 cluster # 3113 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3113#0 length = 646 sequences # 1

consensus_3113#1 length = 327 sequences # 1

consensusID : consensus_3113#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 646
fasta sequence

                              [CCGCCCGAATGGTCGATCGTCGATCGCGCTTCGCTTCGCCTGCGATTTGCAGGTGGATTAATCGGACCACAAGCACCACTCGGCCGGCAGTCAGAGCCGAACCGCGCAGCCGTCTCTCGCTCAATTTCGCGTGTGATTTTGTGAAAAGAAAGAACCATCAACCCTCCACGGGCTTGTAAGCCCGCGGGCGGCCGTAGCAGTGTACAAAACCTGAAATCCAGGACCCGTGGCAGGAAATAGAGATAACTCGGAAGCGTATCGCAGCCTCCACAATCGCTGATGTCGCCAAGAGAGCGGAGAGCAGCTACCTGGCCTGCGAGCAAACAGTAACCACTGCCAACCTTCACCGGGGACAGCGCACCGTTACGAGCGGCTCGGGTTCAAGTTCTCGGCAAGATAGTTCTTCCCTTTCGTGTAGCCCACGCTCACACGCTCGCGCGCGCTTCTTCGCCCCTTCAACCGTGCTATTAAACCGTACACACAAACCTGTCGCGCAGCTCGATCGGATTCGCAGCCAGTCTTGTTAGTGCCGTCGCAGCGGAAGGAACGAACGTGTCGGACGCGCTCTATGTGTGACGTGCAAACTGCTATCGCACGAAAATGAAGCACGATTCGGCTGGAGCGGAAAGTGGCATTGTGAATCCCA]

[+] EMBL BM600753             [CCGCCCGAATGGTCGATCGTCGATCGCGCTTCGCTTCGCCTGCGATTTGCAGGTGGATTAATCGGACCACAAGCACCACTCGGCCGGCAGTCAGAGCCGAACCGCGCAGCCGTCTCTCGCTCAATTTCGCGTGTGATTTTGTGAAAAGAAAGAACCATCAACCCTCCACGGGCTTGTAAGCCCGCGGGCGGCCGTAGCAGTGTACAAAACCTGAAATCCAGGACCCGTGGCAGGAAATAGAGATAACTCGGAAGCGTATCGCAGCCTCCACAATCGCTGATGTCGCCAAGAGAGCGGAGAGCAGCTACCTGGCCTGCGAGCAAACAGTAACCACTGCCAACCTTCACCGGGGACAGCGCACCGTTACGAGCGGCTCGGGTTCAAGTTCTCGGCAAGATAGTTCTTCCCTTTCGTGTAGCCCACGCTCACACGCTCGCGCGCGCTTCTTCGCCCCTTCAACCGTGCTATTAAACCGTACACACAAACCTGTCGCGCAGCTCGATCGGATTCGCAGCCAGTCTTGTTAGTGCCGTCGCAGCGGAAGGAACGAACGTGTCGGACGCGCTCTATGTGTGACGTGCAAACTGCTATCGCACGAAAATGAAGCACGATTCGGCTGGAGCGGAAAGTGGCATTGTGAATCCCA]




>consensus_3113#0
CCGCCCGAATGGTCGATCGTCGATCGCGCTTCGCTTCGCCTGCGATTTGCAGGTGGATTA
ATCGGACCACAAGCACCACTCGGCCGGCAGTCAGAGCCGAACCGCGCAGCCGTCTCTCGC
TCAATTTCGCGTGTGATTTTGTGAAAAGAAAGAACCATCAACCCTCCACGGGCTTGTAAG
CCCGCGGGCGGCCGTAGCAGTGTACAAAACCTGAAATCCAGGACCCGTGGCAGGAAATAG
AGATAACTCGGAAGCGTATCGCAGCCTCCACAATCGCTGATGTCGCCAAGAGAGCGGAGA
GCAGCTACCTGGCCTGCGAGCAAACAGTAACCACTGCCAACCTTCACCGGGGACAGCGCA
CCGTTACGAGCGGCTCGGGTTCAAGTTCTCGGCAAGATAGTTCTTCCCTTTCGTGTAGCC
CACGCTCACACGCTCGCGCGCGCTTCTTCGCCCCTTCAACCGTGCTATTAAACCGTACAC
ACAAACCTGTCGCGCAGCTCGATCGGATTCGCAGCCAGTCTTGTTAGTGCCGTCGCAGCG
GAAGGAACGAACGTGTCGGACGCGCTCTATGTGTGACGTGCAAACTGCTATCGCACGAAA
ATGAAGCACGATTCGGCTGGAGCGGAAAGTGGCATTGTGAATCCCA

consensusID : consensus_3113#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 327
fasta sequence

                              [CCGCCCACGCGTCCGCGCAGCGGAAGGAACGAACGTGTCGGACGCGCTCTATGTGTGACGTGCAAACTGCTATCGCACGAAAATGAAGCACGATTCGGTTGGAGCGGAAAGTGGCATTGTGAATCCCACCTTTTACCAGGAGCTATCCGAAGAGCAATCCGTCCCGGATGTGACGCCCCGTGGTGACGCTCTGCCGCAGGTGACCGTTTCGCGACCACTCTATCAGCAGCATCAGCTGAACGATGCGTACCAGTATCGCAAACCGAAACGGGCACTGCAGAGGGAGTTGAAGACGCGAATGCGTAAAGTGGACGCGAAGACCTGCTG]

[+] EMBL BM578719             [CCGCCCACGCGTCCGCGCAGCGGAAGGAACGAACGTGTCGGACGCGCTCTATGTGTGACGTGCAAACTGCTATCGCACGAAAATGAAGCACGATTCGGTTGGAGCGGAAAGTGGCATTGTGAATCCCACCTTTTACCAGGAGCTATCCGAAGAGCAATCCGTCCCGGATGTGACGCCCCGTGGTGACGCTCTGCCGCAGGTGACCGTTTCGCGACCACTCTATCAGCAGCATCAGCTGAACGATGCGTACCAGTATCGCAAACCGAAACGGGCACTGCAGAGGGAGTTGAAGACGCGAATGCGTAAAGTGGACGCGAAGACCTGCTG]




>consensus_3113#1
CCGCCCACGCGTCCGCGCAGCGGAAGGAACGAACGTGTCGGACGCGCTCTATGTGTGACG
TGCAAACTGCTATCGCACGAAAATGAAGCACGATTCGGTTGGAGCGGAAAGTGGCATTGT
GAATCCCACCTTTTACCAGGAGCTATCCGAAGAGCAATCCGTCCCGGATGTGACGCCCCG
TGGTGACGCTCTGCCGCAGGTGACCGTTTCGCGACCACTCTATCAGCAGCATCAGCTGAA
CGATGCGTACCAGTATCGCAAACCGAAACGGGCACTGCAGAGGGAGTTGAAGACGCGAAT
GCGTAAAGTGGACGCGAAGACCTGCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3113#0      CCGCCCGAATGGTCGATCGTCGATCGCGCTTCGCTTCGCCTGCGATTTGCAGGTGGATTA 60
consensus_3113#1      ------------------------------------------------------------
                                                                                  

consensus_3113#0      ATCGGACCACAAGCACCACTCGGCCGGCAGTCAGAGCCGAACCGCGCAGCCGTCTCTCGC 120
consensus_3113#1      ------------------------------------------------------------
                                                                                  

consensus_3113#0      TCAATTTCGCGTGTGATTTTGTGAAAAGAAAGAACCATCAACCCTCCACGGGCTTGTAAG 180
consensus_3113#1      ------------------------------------------------------------
                                                                                  

consensus_3113#0      CCCGCGGGCGGCCGTAGCAGTGTACAAAACCTGAAATCCAGGACCCGTGGCAGGAAATAG 240
consensus_3113#1      ------------------------------CCGCCCACGCGTCCGCGCAGCGGAAGGAAC 30
                                                    * *    *  *  * **  ** * *   * 

consensus_3113#0      AGATAACTCGGAAGCGTATCGCAGCCTCCACAATCGCTGATGTCGCCAAGAGAGCGGAGA 300
consensus_3113#1      GAACGTGTCGGACGCGCTCTATGTGTGACGTGCAAACTGCTATCGC-ACGAAAATGAAGC 89
                        *    ***** ***            *       *** * **** * ** *  * ** 

consensus_3113#0      GCAGCTACCTGGCCTGCGAGCAAACAGTAACCACTGCCAACCTTCACCGGGGACAGCGCA 360
consensus_3113#1      ACGATTCGGTTG-----GAGCGGAAAGTGGC-ATTGTGAATCC-CACCTTTTACCAGGAG 142
                       *   *   * *     ****  * ***  * * **  ** *  ****    **   *  

consensus_3113#0      CCGTTACGAGCGGCTCGGGTTCAAGTTCTCGGCAAGATAGTTCTTCCCTTTCGTGTAGCC 420
consensus_3113#1      CTATC-CGAAGAGC---AATCC--GTCCCGGATGTGACG------CCCCGTGGTG----- 185
                      *  *  ***   **     * *  ** *  *    **        ***  * ***     

consensus_3113#0      CACGCTCACACGCTCGCGCGCGCTTCTTCGCCCCTTCAACCGTGCTATTAAACCGTACAC 480
consensus_3113#1      -ACGCTCTGCCGCAGGTGACCGTTTCGCGACCACTCTATCAGCAGCATCAGCTGAACGAT 244
                       ******   ***  * *  ** ***    ** **  * * *    ** *        * 

consensus_3113#0      ACAAACCTGTCGCGCAGCTCGATCGGATTCGCAGCCAGTCTTGTTAGTGCCGTCGCAGCG 540
consensus_3113#1      GCGTACCAGTATCGCAAACCGAAACGGG-CACTGCAGAGGGAGTTGAAGACGCGAATGCG 303
                       *  *** **  ****   ***   *   * * **       ***   * **     ***

consensus_3113#0      GAAGGAACGAACGTGTCGGACGCGCTCTATGTGTGACGTGCAAACTGCTATCGCACGAAA 600
consensus_3113#1      TAAAG--TGGACGCGA-AGACCTGCTG--------------------------------- 327
                       ** *   * *** *   ***  ***                                  

consensus_3113#0      ATGAAGCACGATTCGGCTGGAGCGGAAAGTGGCATTGTGAATCCCA 646
consensus_3113#1      ----------------------------------------------