These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3119#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 713 fasta sequence [CGAAAACAACATCCTCCTCTTCCACTAATCAATCAGCAGCGTTTTGTGGTGATTGCGTTAATCGTGCACCGAACGTGATACGTGTCGGATCGATCGTTCCGGGAATTCGGAACTTTTTGCGTGTGCGAGACAGGACACTCGCAAGTAGTTCGTGCCAGTAGTACTGGAAGTGATTGCCATAACCTAAATCCTGAGTGAGATATGATCGAGAAGCGGAAGAATCGGTAGAGAAACCCGTCCCACCGTATATACGTCTAGACCCTCGGAGGGGATCTATCTCGCTTCCATCAGAACGATCACTCTCTCTATCTCTCTCTATCTCGCTCTTACGTTCAGTGTTCTGAAACGATCGGCGGGGATTCCGGTTTTTGTGGTGCTTCTGCTCTGTGCCCTGCCTATAATCGTTATAAAAACCATACTACCAACCCGTCGCTGCAGTTCAGTGTGGTGGTGTCGATCGTCCACAACGGACACCAGACAGCAGAGGAGTGTGTGATTCGAGCTGCTGGTTCGAGCTCTCGTGTTTGTGTGTAGGTCATTGTGTGATTAGCGTGAAGATGGGCATCAGACGGGACGAAAGCGTCGCACGGCTACTGCTGCTACTGGGCTGCGTTGCACTGCAGACTTCGGCAGCACTCGCACAGTCGCAGCAAACCTTCCGCTCGCNACCACAGTACGGCAATCGTGGGTTCCTCGTTCGCTGCTCCCGCACT] [+] EMBL BX623898 [CGAAAACAACATCCTCCTCTTCCACTAATCAATCAGCAGCGTTTTGTGGTGATTGCGTTAATCGTGCACCGAACGTGATACGTGTCGGATCGATCGTTCCGGGAATTCGGAACTTTTTGCGTGTGCGAGACAGGACACTCGCAAGTAGTTCGTGCCAGTAGTACTGGAAGTGATTGCCATAACCTAAATCCTGAGTGAGATATGATCGAGAAGCGGAAGAATCGGTAGAGAAACCCGTCCCACCGTATATACGTCTAGACCCTCGGAGGGGATCTATCTCGCTTCCATCAGAACGATCACTCTCTCTATCTCTCTCTATCTCGCTCTTACGTTCAGTGTTCTGAAACGATCGGCGGGGATTCCGGTTTTTGTGGTGCTTCTGCTCTGTGCCCTGCCTATAATCGTTATAAAAACCATACTACCAACCCGTCGCTGCAGTTCAGTGTGGTGGTGTCGATCGTCCACAACGGACACCAGACAGCAGAGGAGTGTGTGATTCGAGCTGCTGGTTCGAGCTCTCGTGTTTGTGTGTAGGTCATTGTGTGATTAGCGTGAAGATGGGCATCAGACGGGACGAAAGCGTCGCACGGCTACTGCTGCTACTGGGCTGCGTTGCACTGCAGACTTCGGCAGCACTCGCACAGTCGCAGCAAACCTTCCGCTCGCNACCACAGTACGGCAATCGTGGGTTCCTCGTTCGCTGCTCCCGCACT] consensusID : consensus_3119#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGAGCAGCAGAGAGGTTGCCTGCAGTCAAGCACGCGAAAACAACATCCTCCTCTTCAACTAATCAATCAGCAGCGTTTTGTGGTGGTGCGTTAATCGTGCACCGAACGTGATACGTGTCGGATCGATCGTTCCGGGAATTCGGAACTTTTTGCGTGTGCGAGACAGGACACGCACAAGTAGTTCGTGCCAGTAGTACTGGAAGTGATTGCCATAACCTAAATCCTGAGTGAGATATGATCGAGAAGCGGAAGAATCGGTAGAGAAACCCGTCCCACCGTATATACGTCTAGACCCTCGGAGGGGATCTATCTCGCTTCCATCAGAACGATCACTCTCTCTATCTCTCTCTTACGTTTAGTGTTCTGAAACGATCGGCGGGGATTCCGGTTTTTGTGGTGCTTCTGCTCTGTGCCCTGCCTATAATCGTTATAAAAACCATACTACCAACCCGTCGCTGCAGTTCAGTGTGGTGGTGTCGATCGTCCACAACGGACACCAGACAGCAGAGGAGTGTGTGATTCGAGCTGCTGGTTCGAGCTCTCGTGTTTGTGTGTAGGTCATTGTGTGATTAGCGTGAAGATGGGCATCAGACGGGACGAAAGCGTCGCACGGCTACTGCTGCTACTGGGGCTGCGTTGCACTGCACACTTCG] [+] EMBL BM587152 [CCGCCCACGCGTCCGCCCACGCGTCCGGAGCAGCAGAGAGGTTGCCTGCAGTCAAGCACGCGAAAACAACATCCTCCTCTTCAACTAATCAATCAGCAGCGTTTTGTGGTGGTGCGTTAATCGTGCACCGAACGTGATACGTGTCGGATCGATCGTTCCGGGAATTCGGAACTTTTTGCGTGTGCGAGACAGGACACGCACAAGTAGTTCGTGCCAGTAGTACTGGAAGTGATTGCCATAACCTAAATCCTGAGTGAGATATGATCGAGAAGCGGAAGAATCGGTAGAGAAACCCGTCCCACCGTATATACGTCTAGACCCTCGGAGGGGATCTATCTCGCTTCCATCAGAACGATCACTCTCTCTATCTCTCTCTTACGTTTAGTGTTCTGAAACGATCGGCGGGGATTCCGGTTTTTGTGGTGCTTCTGCTCTGTGCCCTGCCTATAATCGTTATAAAAACCATACTACCAACCCGTCGCTGCAGTTCAGTGTGGTGGTGTCGATCGTCCACAACGGACACCAGACAGCAGAGGAGTGTGTGATTCGAGCTGCTGGTTCGAGCTCTCGTGTTTGTGTGTAGGTCATTGTGTGATTAGCGTGAAGATGGGCATCAGACGGGACGAAAGCGTCGCACGGCTACTGCTGCTACTGGGGCTGCGTTGCACTGCACACTTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3119#0 ------------------------------------------------------------ consensus_3119#1 CCGCCCACGCGTCCGCCCACGCGTCCGGAGCAGCAGAGAGGTTGCCTGCAGTCAAGCACG 60 consensus_3119#0 CGAAAACAACATCCTCCTCTTCCACTAATCAATCAGCAGCGTTTTGTGGTGATTGCGTTA 60 consensus_3119#1 CGAAAACAACATCCTCCTCTTCAACTAATCAATCAGCAGCGTTTTGTGGTGGT-GCGTTA 119 ********************** **************************** * ****** consensus_3119#0 ATCGTGCACCGAACGTGATACGTGTCGGATCGATCGTTCCGGGAATTCGGAACTTTTTGC 120 consensus_3119#1 ATCGTGCACCGAACGTGATACGTGTCGGATCGATCGTTCCGGGAATTCGGAACTTTTTGC 179 ************************************************************ consensus_3119#0 GTGTGCGAGACAGGACACTCGCAAGTAGTTCGTGCCAGTAGTACTGGAAGTGATTGCCAT 180 consensus_3119#1 GTGTGCGAGACAGGACACGCACAAGTAGTTCGTGCCAGTAGTACTGGAAGTGATTGCCAT 239 ****************** * *************************************** consensus_3119#0 AACCTAAATCCTGAGTGAGATATGATCGAGAAGCGGAAGAATCGGTAGAGAAACCCGTCC 240 consensus_3119#1 AACCTAAATCCTGAGTGAGATATGATCGAGAAGCGGAAGAATCGGTAGAGAAACCCGTCC 299 ************************************************************ consensus_3119#0 CACCGTATATACGTCTAGACCCTCGGAGGGGATCTATCTCGCTTCCATCAGAACGATCAC 300 consensus_3119#1 CACCGTATATACGTCTAGACCCTCGGAGGGGATCTATCTCGCTTCCATCAGAACGATCAC 359 ************************************************************ consensus_3119#0 TCTCTCTATCTCTCTCTATCTCGCTCTTACGTTCAGTGTTCTGAAACGATCGGCGGGGAT 360 consensus_3119#1 TCTCTCTATCTCTCTCT----------TACGTTTAGTGTTCTGAAACGATCGGCGGGGAT 409 ***************** ****** ************************** consensus_3119#0 TCCGGTTTTTGTGGTGCTTCTGCTCTGTGCCCTGCCTATAATCGTTATAAAAACCATACT 420 consensus_3119#1 TCCGGTTTTTGTGGTGCTTCTGCTCTGTGCCCTGCCTATAATCGTTATAAAAACCATACT 469 ************************************************************ consensus_3119#0 ACCAACCCGTCGCTGCAGTTCAGTGTGGTGGTGTCGATCGTCCACAACGGACACCAGACA 480 consensus_3119#1 ACCAACCCGTCGCTGCAGTTCAGTGTGGTGGTGTCGATCGTCCACAACGGACACCAGACA 529 ************************************************************ consensus_3119#0 GCAGAGGAGTGTGTGATTCGAGCTGCTGGTTCGAGCTCTCGTGTTTGTGTGTAGGTCATT 540 consensus_3119#1 GCAGAGGAGTGTGTGATTCGAGCTGCTGGTTCGAGCTCTCGTGTTTGTGTGTAGGTCATT 589 ************************************************************ consensus_3119#0 GTGTGATTAGCGTGAAGATGGGCATCAGACGGGACGAAAGCGTCGCACGGCTACTGCTGC 600 consensus_3119#1 GTGTGATTAGCGTGAAGATGGGCATCAGACGGGACGAAAGCGTCGCACGGCTACTGCTGC 649 ************************************************************ consensus_3119#0 TACTGGG-CTGCGTTGCACTGCAGACTTCGGCAGCACTCGCACAGTCGCAGCAAACCTTC 659 consensus_3119#1 TACTGGGGCTGCGTTGCACTGCACACTTCG------------------------------ 679 ******* *************** ****** consensus_3119#0 CGCTCGCNACCACAGTACGGCAATCGTGGGTTCCTCGTTCGCTGCTCCCGCACT 713 consensus_3119#1 ------------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||