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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3129#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 702 fasta sequence
[CAGAATCGGCACGATGGGCTGCCGGCACTACTGTCGCATTGTTTCGTGTACCTGTTTCTGACCACTTTCTACACCAACAGTAAGAGCAATCTGTCGCTCGGTCAAATGACCCAGGCCCGGCTGGTTGGTGTGAATGTGTTCTGGAGTGTCGTAACGCTTGCCGCTACGGTGGCCGGCTACCGAAGCGGCTACATTCCTATGGTGCTACTCGTCTGCTCCCTTGCGTCCTCCACGCTGAACCTGCTCTTCAACGCAAGTCGAACGCATCGAGCTTGGATGTACATTCACCTAGCCGGCCAGCTGCCCGCACTGCTCTGGGCCACTAACTTCTACAACGTGCTCATTGCACTGTTCGTACCGATCACGGGCCGATTTGGAGGGTCGCGCAATCCGGAAGTGTTTATCTCGCTGCTAGCCGCTGGCGGTACGCTTCTCTGCTGCAGCTATTTAATTCCATTCATTGCTCAGCTGCGCAAAATGATGAATTTCACCGCAACTGTCAGCCATCACCGTGCTAACGCTTGTTGCTGGCATGCTTTAAGCCCCTCTCGGGAATGCCGTATCGGGGATGAGAGTATGGGCCANCCGGAACCGAACCCCCCCAGGGGAGNAACTACGTAACGGCACACTTTTCCGGAGTTGTTCCACGATGAAGTTCGGCCTGTGACCAAGAAGGCCACCGACACGCGGGGAATGCATTTT]
[+] EMBL BX469840 [CAGAATCGGCACGATGGGCTGCCGGCACTACTGTCGCATTGTTTCGTGTACCTGTTTCTGACCACTTTCTACACCAACAGTAAGAGCAATCTGTCGCTCGGTCAAATGACCCAGGCCCGGCTGGTTGGTGTGAATGTGTTCTGGAGTGTCGTAACGCTTGCCGCTACGGTGGCCGGCTACCGAAGCGGCTACATTCCTATGGTGCTACTCGTCTGCTCCCTTGCGTCCTCCACGCTGAACCTGCTCTTCAACGCAAGTCGAACGCATCGAGCTTGGATGTACATTCACCTAGCCGGCCAGCTGCCCGCACTGCTCTGGGCCACTAACTTCTACAACGTGCTCATTGCACTGTTCGTACCGATCACGGGCCGATTTGGAGGGTCGCGCAATCCGGAAGTGTTTATCTCGCTGCTAGCCGCTGGCGGTACGCTTCTCTGCTGCAGCTATTTAATTCCATTCATTGCTCAGCTGCGCAAAATGATGAATTTCACCGCAACTGTCAGCCATCACCGTGCTAACGCTTGTTGCTGGCATGCTTTAAGCCCCTCTCGGGAATGCCGTATCGGGGATGAGAGTATGGGCCANCCGGAACCGAACCCCCCCAGGGGAGNAACTACGTAACGGCACACTTTTCCGGAGTTGTTCCACGATGAAGTTCGGCCTGTGACCAAGAAGGCCACCGACACGCGGGGAATGCATTTT]
consensusID : consensus_3129#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence
[CCGCCGTTCGCACACACCGTCGGGGAGGAGATCTTCCAGCTAGGCCTCATTCCCTCCGATACGGACTTTCGAATGTTTCGCGATTACGGCGAGGTGCCCGGGATGGACTTTGCCCACATCGCGAACGGGTACCGGTACCACACGCGCTACGACTCGATGGATTTTCTCTCGCTCGATGTGCTGCAGCGCACCGGCGACAATGTGCTCGCCCTGACGCGCGATCTGGCCGAGAGCGATGAGCTGGCCGCGTCCGACCTACCGGTCGGGGAGACCGTGTTCTTCGACTTTATCGGACTCGCGTTTGTGCATTACTCTGCCTCCAGTGGCCGTTTGATTAATCTGGCAGTGGTGGTACTTTCCCTTATCGTGCCTTTGATGTGCTTTGCCCGTGCGCGCTTCGATGACGTTCTGCGGGAAGTTATCGTCGGATTGGTGGGCACCGTGTTTGGGACCGTTTTCAGCATCATCGCTTGTACCACCATTGCGCGCCAGTTGGACTTTTTCGGAAAAAGCATGACCTGGTACACGAACACCCATCTGATCTTGGGACTGTACTGCTGCCCGGCACTACTGTCGCATTGTTTCGTGTACCTGTTTCTGACCACTTTCTACACCAACAGTAAGAGCAATCTGTCGCTCGGTCAAATGACCCAGGCCCGGCTGGTTGGTGTGAATGTGTT]
[+] EMBL BM642709 [CCGCCGTTCGCACACACCGTCGGGGAGGAGATCTTCCAGCTAGGCCTCATTCCCTCCGATACGGACTTTCGAATGTTTCGCGATTACGGCGAGGTGCCCGGGATGGACTTTGCCCACATCGCGAACGGGTACCGGTACCACACGCGCTACGACTCGATGGATTTTCTCTCGCTCGATGTGCTGCAGCGCACCGGCGACAATGTGCTCGCCCTGACGCGCGATCTGGCCGAGAGCGATGAGCTGGCCGCGTCCGACCTACCGGTCGGGGAGACCGTGTTCTTCGACTTTATCGGACTCGCGTTTGTGCATTACTCTGCCTCCAGTGGCCGTTTGATTAATCTGGCAGTGGTGGTACTTTCCCTTATCGTGCCTTTGATGTGCTTTGCCCGTGCGCGCTTCGATGACGTTCTGCGGGAAGTTATCGTCGGATTGGTGGGCACCGTGTTTGGGACCGTTTTCAGCATCATCGCTTGTACCACCATTGCGCGCCAGTTGGACTTTTTCGGAAAAAGCATGACCTGGTACACGAACACCCATCTGATCTTGGGACTGTACTGCTGCCCGGCACTACTGTCGCATTGTTTCGTGTACCTGTTTCTGACCACTTTCTACACCAACAGTAAGAGCAATCTGTCGCTCGGTCAAATGACCCAGGCCCGGCTGGTTGGTGTGAATGTGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3129#0 CAGAATCGGCACGATGGGCTGCCGGCACTACTGTCGCATTGTTTCGTGTACCTGTTTCTG 60
consensus_3129#1 ---------------------CCGCCGTT-CGCACACACCGTCGGGGAGGAGATCTTCCA 38
*** * * * * ** ** * ***
consensus_3129#0 ACCACTTTCTACACCAACAGTAAGAGCAATCTGTCGCTCGGTCAAATGACCCAGGCCCGG 120
consensus_3129#1 GCTAGGCCTCATTCCCTCCGATA---CGGACTTTCGAATGTTTCG-CGATTACGGCGAGG 94
* * * ** * * * * ** *** * * ** *** **
consensus_3129#0 CTGGTTGGTGTGAATGTGTTCTGGAGTGTCGTAACGCTTGCCGCTACGGTGGCCGGCTAC 180
consensus_3129#1 -TGCCCGGGATGGACTTTGCCCACATCGCG--AACGGGTACCGGTACCACACGCG-CTAC 150
** ** ** * * * * * **** * *** *** ** ****
consensus_3129#0 CGAAGCGGCTACATTCCTATGGTGCTACTCGTCTGCTCCCTTGCGTCCTCCACGCTGAAC 240
consensus_3129#1 -GACTCGATGGATTTTCTCTCGCTCGA----TGTGCTGCAGCGCACCGGCGACAATGTGC 205
** ** ** ** * * * * * **** * ** * * ** ** *
consensus_3129#0 CTGCTCTTCAACGCAAGTCGAACGCATCGAGCTTGGATGTACATTCACCTAGCCGGCCAG 300
consensus_3129#1 TCGCCCTGACGCGCGATCTGGCCG---AGAGC---GATG-------AGCTGGCCG--CGT 250
** ** *** * * ** **** **** * ** **** *
consensus_3129#0 CTGCCCGCACTGCTCTGGGCCACTAACTTCTACAACGTGCTCATTGCACTGTTCGTACCG 360
consensus_3129#1 CCGACC-TACCGGTCGGGGAGACCGTGTTCTTCGACTTTATCGGACTCGCGTTTGTGCAT 309
* * ** ** * ** *** ** **** * ** * ** *** ** *
consensus_3129#0 ATCACGGGCCGATTTGGAGGGTCGCGCAATCCGGAAGTGTTTAT-CTCGCTGCTAGC-CG 418
consensus_3129#1 TACTCTGCCTCCAGTGGCCGTTTGATTAATCTGGCAGTGGTGGTACTTTCCCTTATCGTG 369
* * * * *** * * * **** ** **** * * ** * ** * *
consensus_3129#0 CTGGCGGTACGCTTCTCTGCTGCAGCTATTTAATTCCATTCATTGCTCAGCTGCG--CAA 476
consensus_3129#1 CCTTTGATGTGCTTTGCCCGTGC-GCGCTTCGATGACGTTCTGCGGGAAGTTATCGTCGG 428
* * * **** * *** ** ** ** * *** * ** * *
consensus_3129#0 AATGATGAATTTCACCGCAACTGTCAGCCATCACCGTGCTAACGCTTGTTGC----TGGC 532
consensus_3129#1 ATTGGTGGG---CACCGTGTTTGGGACCGTTTTCAGCATCATCGCTTGTACCACCATTGC 485
* ** ** ***** ** * * * * * * ******* * * **
consensus_3129#0 ATGCT--TTAAGCCCCTCTCGGGAATGCCGTATCGGGGATGAGAGTATGGGCCAN---CC 587
consensus_3129#1 GCGCCAGTTGGACTTTTTCGGAAAAAGCATGACCTGGTACACGAACACCCATCTGATCTT 545
** ** * * * ** ** * * ** * ** * *
consensus_3129#0 GGAACCGAACCCCCCCAGGGGAGNAACTACGTAACG------GCACACTTTTCCGGAGTT 641
consensus_3129#1 GGGACTGTACTGCTGCCCGGCACTACTGTCGCATTGTTTCGTGTACCTGTTTCTGACCAC 605
** ** * ** * * ** * * ** * * * ** **** *
consensus_3129#0 GTTCCACGATGA-----AGTTCGGCCTGTGACCAAGA-AGGCCACCGACACGCGGGGAAT 695
consensus_3129#1 TTTCTACACCAACAGTAAGAGCAATCTGTCGCTCGGTCAAATGACCCAGGCCCGGCTGGT 665
*** ** * ** * **** * * * *** * * *** *
consensus_3129#0 GCATTTT-------- 702
consensus_3129#1 TGGTGTGAATGTGTT 680
* *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||