cluster # 3140

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Anopheles gambiae
cluster # 3140 cluster # 3140 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3140#0 length = 672 sequences # 1

consensus_3140#1 length = 422 sequences # 1

consensusID : consensus_3140#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 672
fasta sequence

                              [CCGCAACCGTCATGGCGTCACTACTGAAAATTACACGCTCTTTGCGTTTTGTACGAAAATTTCACTGTAAACCTGAGGACACCTACCCTTTGGATGCACCGAGACGGAACATGCCCAAAGTGAGCAAACCGGCAGAGTACGAACTGCTGCCCGGAATGTCGCCGAAAGTCTTCCGCGAGACGGAGTACGATAATCAACTTGGTCCCATACCGATGACGGGCGATGCAGCAAAGAACTTTAGCTACAAAAATCCGGAATACTTCTCGTACCACAACTACTCGTTTTACGACATCGGGCGGGCGATTGGGTGTGCCTACCGTGTGCAGCCGAGCGCACTGCCCCACCGGGCCAAGCGGTTCCGGTTGCCATGGCAGAAGCAGCAGGCGGAGCAGGACTTGCTGTACGATGCCGCGATTCCGGTGACGCTCAGCTGTCTGTACTGCGAGATGGAGGAAAAGTCAGCTCCAAAGCAGGAGGAATTGAACAAAGCGGCGTCCTAGAGAAAAGAGGGGCTGCTTGGCTGGTGGACGTTAATGAGTTCAATCTAACAAGATGTTGCCAAGAACAGAAGAAGGTCAGAAACCAACTTGGGGTTGGGGGTTGGTCTATTGTATTTGCTATCACAACTTGAAGCATGCATGACACCGTTTTTATGCGATGGGAACAGCTGAC]

[+] EMBL BM606369             [CCGCAACCGTCATGGCGTCACTACTGAAAATTACACGCTCTTTGCGTTTTGTACGAAAATTTCACTGTAAACCTGAGGACACCTACCCTTTGGATGCACCGAGACGGAACATGCCCAAAGTGAGCAAACCGGCAGAGTACGAACTGCTGCCCGGAATGTCGCCGAAAGTCTTCCGCGAGACGGAGTACGATAATCAACTTGGTCCCATACCGATGACGGGCGATGCAGCAAAGAACTTTAGCTACAAAAATCCGGAATACTTCTCGTACCACAACTACTCGTTTTACGACATCGGGCGGGCGATTGGGTGTGCCTACCGTGTGCAGCCGAGCGCACTGCCCCACCGGGCCAAGCGGTTCCGGTTGCCATGGCAGAAGCAGCAGGCGGAGCAGGACTTGCTGTACGATGCCGCGATTCCGGTGACGCTCAGCTGTCTGTACTGCGAGATGGAGGAAAAGTCAGCTCCAAAGCAGGAGGAATTGAACAAAGCGGCGTCCTAGAGAAAAGAGGGGCTGCTTGGCTGGTGGACGTTAATGAGTTCAATCTAACAAGATGTTGCCAAGAACAGAAGAAGGTCAGAAACCAACTTGGGGTTGGGGGTTGGTCTATTGTATTTGCTATCACAACTTGAAGCATGCATGACACCGTTTTTATGCGATGGGAACAGCTGAC]




>consensus_3140#0
CCGCAACCGTCATGGCGTCACTACTGAAAATTACACGCTCTTTGCGTTTTGTACGAAAAT
TTCACTGTAAACCTGAGGACACCTACCCTTTGGATGCACCGAGACGGAACATGCCCAAAG
TGAGCAAACCGGCAGAGTACGAACTGCTGCCCGGAATGTCGCCGAAAGTCTTCCGCGAGA
CGGAGTACGATAATCAACTTGGTCCCATACCGATGACGGGCGATGCAGCAAAGAACTTTA
GCTACAAAAATCCGGAATACTTCTCGTACCACAACTACTCGTTTTACGACATCGGGCGGG
CGATTGGGTGTGCCTACCGTGTGCAGCCGAGCGCACTGCCCCACCGGGCCAAGCGGTTCC
GGTTGCCATGGCAGAAGCAGCAGGCGGAGCAGGACTTGCTGTACGATGCCGCGATTCCGG
TGACGCTCAGCTGTCTGTACTGCGAGATGGAGGAAAAGTCAGCTCCAAAGCAGGAGGAAT
TGAACAAAGCGGCGTCCTAGAGAAAAGAGGGGCTGCTTGGCTGGTGGACGTTAATGAGTT
CAATCTAACAAGATGTTGCCAAGAACAGAAGAAGGTCAGAAACCAACTTGGGGTTGGGGG
TTGGTCTATTGTATTTGCTATCACAACTTGAAGCATGCATGACACCGTTTTTATGCGATG
GGAACAGCTGAC

consensusID : consensus_3140#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 422
fasta sequence

                              [TCGCCCGAGGTNTATGGCGTCACTACTGAAAATTACACGCTCTTTGCGTTTTGTACGAAAATTTCACTGTAAACCTGAGGACACCTACCCTTTGGATGCACCGAGACGGAACATGCCCAAAGTGAGCAAACCGGCAGAGTACGAACTGCTGCCCGGAATGTCGCCGAAAGTCTTCCGCGAGACGGAGTACGATAATCAACTTGGTCCCATACCGATGACGGGCGATGCAGCAAAGAACTTTAGCTACAAAAATCCGGAATACTTCTCGTACCACAACTACTCGTTTTACGACATCGGGCGGGCGATTGGGTGTGCCTACCGTGTGCAGCCGAGCGCACTGGCCCACCGGGCCAAGCGGTTCCGGTTGCCATGGCAGAAGCAGCAGGCGGAGCAGGACTTGCTGTACGATGCCGCGATTCCGG]

[+] EMBL AL934939             [TCGCCCGAGGTNTATGGCGTCACTACTGAAAATTACACGCTCTTTGCGTTTTGTACGAAAATTTCACTGTAAACCTGAGGACACCTACCCTTTGGATGCACCGAGACGGAACATGCCCAAAGTGAGCAAACCGGCAGAGTACGAACTGCTGCCCGGAATGTCGCCGAAAGTCTTCCGCGAGACGGAGTACGATAATCAACTTGGTCCCATACCGATGACGGGCGATGCAGCAAAGAACTTTAGCTACAAAAATCCGGAATACTTCTCGTACCACAACTACTCGTTTTACGACATCGGGCGGGCGATTGGGTGTGCCTACCGTGTGCAGCCGAGCGCACTGGCCCACCGGGCCAAGCGGTTCCGGTTGCCATGGCAGAAGCAGCAGGCGGAGCAGGACTTGCTGTACGATGCCGCGATTCCGG]




>consensus_3140#1
TCGCCCGAGGTNTATGGCGTCACTACTGAAAATTACACGCTCTTTGCGTTTTGTACGAAA
ATTTCACTGTAAACCTGAGGACACCTACCCTTTGGATGCACCGAGACGGAACATGCCCAA
AGTGAGCAAACCGGCAGAGTACGAACTGCTGCCCGGAATGTCGCCGAAAGTCTTCCGCGA
GACGGAGTACGATAATCAACTTGGTCCCATACCGATGACGGGCGATGCAGCAAAGAACTT
TAGCTACAAAAATCCGGAATACTTCTCGTACCACAACTACTCGTTTTACGACATCGGGCG
GGCGATTGGGTGTGCCTACCGTGTGCAGCCGAGCGCACTGGCCCACCGGGCCAAGCGGTT
CCGGTTGCCATGGCAGAAGCAGCAGGCGGAGCAGGACTTGCTGTACGATGCCGCGATTCC
GG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3140#0      --CCGCAACCGTCATGGCGTCACTACTGAAAATTACACGCTCTTTGCGTTTTGTACGAAA 58
consensus_3140#1      TCGCCCGAGGTNTATGGCGTCACTACTGAAAATTACACGCTCTTTGCGTTTTGTACGAAA 60
                         * * *     ***********************************************

consensus_3140#0      ATTTCACTGTAAACCTGAGGACACCTACCCTTTGGATGCACCGAGACGGAACATGCCCAA 118
consensus_3140#1      ATTTCACTGTAAACCTGAGGACACCTACCCTTTGGATGCACCGAGACGGAACATGCCCAA 120
                      ************************************************************

consensus_3140#0      AGTGAGCAAACCGGCAGAGTACGAACTGCTGCCCGGAATGTCGCCGAAAGTCTTCCGCGA 178
consensus_3140#1      AGTGAGCAAACCGGCAGAGTACGAACTGCTGCCCGGAATGTCGCCGAAAGTCTTCCGCGA 180
                      ************************************************************

consensus_3140#0      GACGGAGTACGATAATCAACTTGGTCCCATACCGATGACGGGCGATGCAGCAAAGAACTT 238
consensus_3140#1      GACGGAGTACGATAATCAACTTGGTCCCATACCGATGACGGGCGATGCAGCAAAGAACTT 240
                      ************************************************************

consensus_3140#0      TAGCTACAAAAATCCGGAATACTTCTCGTACCACAACTACTCGTTTTACGACATCGGGCG 298
consensus_3140#1      TAGCTACAAAAATCCGGAATACTTCTCGTACCACAACTACTCGTTTTACGACATCGGGCG 300
                      ************************************************************

consensus_3140#0      GGCGATTGGGTGTGCCTACCGTGTGCAGCCGAGCGCACTGCCCCACCGGGCCAAGCGGTT 358
consensus_3140#1      GGCGATTGGGTGTGCCTACCGTGTGCAGCCGAGCGCACTGGCCCACCGGGCCAAGCGGTT 360
                      **************************************** *******************

consensus_3140#0      CCGGTTGCCATGGCAGAAGCAGCAGGCGGAGCAGGACTTGCTGTACGATGCCGCGATTCC 418
consensus_3140#1      CCGGTTGCCATGGCAGAAGCAGCAGGCGGAGCAGGACTTGCTGTACGATGCCGCGATTCC 420
                      ************************************************************

consensus_3140#0      GGTGACGCTCAGCTGTCTGTACTGCGAGATGGAGGAAAAGTCAGCTCCAAAGCAGGAGGA 478
consensus_3140#1      GG---------------------------------------------------------- 422
                      **                                                          

consensus_3140#0      ATTGAACAAAGCGGCGTCCTAGAGAAAAGAGGGGCTGCTTGGCTGGTGGACGTTAATGAG 538
consensus_3140#1      ------------------------------------------------------------
                                                                                  

consensus_3140#0      TTCAATCTAACAAGATGTTGCCAAGAACAGAAGAAGGTCAGAAACCAACTTGGGGTTGGG 598
consensus_3140#1      ------------------------------------------------------------
                                                                                  

consensus_3140#0      GGTTGGTCTATTGTATTTGCTATCACAACTTGAAGCATGCATGACACCGTTTTTATGCGA 658
consensus_3140#1      ------------------------------------------------------------
                                                                                  

consensus_3140#0      TGGGAACAGCTGAC 672
consensus_3140#1      --------------