cluster # 3163

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Anopheles gambiae
cluster # 3163 cluster # 3163 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3163#0 length = 769 sequences # 1

consensus_3163#1 length = 659 sequences # 1

consensusID : consensus_3163#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 769
fasta sequence

                              [CATCTCTCCGTGCTGCTTGCATTTTAGTGTCGAGCTCTTCAACATACAGACAAGCAAGCCCGCAAGAGATGTCCAGCAACACGAACAGCACGAATGGGAAGCCGGCCGGCCGCAGCGAGCGTCGCAATAGACAGCGCGCCAAGGACTTTCACCATCGCTACCTAGCGCTGTGCCGCGCGAAGAACTTCCATCCGTTGCCGGAAATAGTGAAAACTAAAAAGAAGAATCAATCCTTCCTGGACGTGTACGGTTATCGGTTCAAGTGCTACGATTGGCAGCTGATCACGGACGCGCTGCGGGAGGACAATTCCTTGAACCATGTGGCGCTGCGTTTGCGCAAAACCTACACGGAAGGTAACGACGTGTGGCGAGATGTAATATGTTGTAGTTTTTTCATAAAAAATGGGATTTCCTTTCGGTTTGGAACACAGGGGCTGTCGCAAAACACTTCCCTGACCGAGCTGAACCTTGCCCGCTGCTCGATCGGCGACGAAGGCTGCAAAGCGCTGTGCGCCGAGATAAAGTTTCTGCCCAACCTGCAGCTCCTAAATCTGACCGCGTGCCAGCTGACCGTTAAAGGGTGCCAGGCCGTGGCGGACGTGATCAAGTTTCAGAAGATGCAGCGCTACGCCACGAGCTGGGAGCAGTCGCTGCGGTACGGTGACATTAAGGAGGATAAGCTAATGGGTTTGCGATATCTGTACCTGAGCCACAACCCCGGCGATCGGGGACTACGGGTTGCTCGAGCTGACCGACGTCTTGAANGACG]

[+] EMBL BX626982             [CATCTCTCCGTGCTGCTTGCATTTTAGTGTCGAGCTCTTCAACATACAGACAAGCAAGCCCGCAAGAGATGTCCAGCAACACGAACAGCACGAATGGGAAGCCGGCCGGCCGCAGCGAGCGTCGCAATAGACAGCGCGCCAAGGACTTTCACCATCGCTACCTAGCGCTGTGCCGCGCGAAGAACTTCCATCCGTTGCCGGAAATAGTGAAAACTAAAAAGAAGAATCAATCCTTCCTGGACGTGTACGGTTATCGGTTCAAGTGCTACGATTGGCAGCTGATCACGGACGCGCTGCGGGAGGACAATTCCTTGAACCATGTGGCGCTGCGTTTGCGCAAAACCTACACGGAAGGTAACGACGTGTGGCGAGATGTAATATGTTGTAGTTTTTTCATAAAAAATGGGATTTCCTTTCGGTTTGGAACACAGGGGCTGTCGCAAAACACTTCCCTGACCGAGCTGAACCTTGCCCGCTGCTCGATCGGCGACGAAGGCTGCAAAGCGCTGTGCGCCGAGATAAAGTTTCTGCCCAACCTGCAGCTCCTAAATCTGACCGCGTGCCAGCTGACCGTTAAAGGGTGCCAGGCCGTGGCGGACGTGATCAAGTTTCAGAAGATGCAGCGCTACGCCACGAGCTGGGAGCAGTCGCTGCGGTACGGTGACATTAAGGAGGATAAGCTAATGGGTTTGCGATATCTGTACCTGAGCCACAACCCCGGCGATCGGGGACTACGGGTTGCTCGAGCTGACCGACGTCTTGAANGACG]




>consensus_3163#0
CATCTCTCCGTGCTGCTTGCATTTTAGTGTCGAGCTCTTCAACATACAGACAAGCAAGCC
CGCAAGAGATGTCCAGCAACACGAACAGCACGAATGGGAAGCCGGCCGGCCGCAGCGAGC
GTCGCAATAGACAGCGCGCCAAGGACTTTCACCATCGCTACCTAGCGCTGTGCCGCGCGA
AGAACTTCCATCCGTTGCCGGAAATAGTGAAAACTAAAAAGAAGAATCAATCCTTCCTGG
ACGTGTACGGTTATCGGTTCAAGTGCTACGATTGGCAGCTGATCACGGACGCGCTGCGGG
AGGACAATTCCTTGAACCATGTGGCGCTGCGTTTGCGCAAAACCTACACGGAAGGTAACG
ACGTGTGGCGAGATGTAATATGTTGTAGTTTTTTCATAAAAAATGGGATTTCCTTTCGGT
TTGGAACACAGGGGCTGTCGCAAAACACTTCCCTGACCGAGCTGAACCTTGCCCGCTGCT
CGATCGGCGACGAAGGCTGCAAAGCGCTGTGCGCCGAGATAAAGTTTCTGCCCAACCTGC
AGCTCCTAAATCTGACCGCGTGCCAGCTGACCGTTAAAGGGTGCCAGGCCGTGGCGGACG
TGATCAAGTTTCAGAAGATGCAGCGCTACGCCACGAGCTGGGAGCAGTCGCTGCGGTACG
GTGACATTAAGGAGGATAAGCTAATGGGTTTGCGATATCTGTACCTGAGCCACAACCCCG
GCGATCGGGGACTACGGGTTGCTCGAGCTGACCGACGTCTTGAANGACG

consensusID : consensus_3163#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 659
fasta sequence

                              [AACAGCACGAATGGGAAGCCGGCCGGCCGCAGCGAGCGTCGCAATAGACAGCGCGCCAAGGACTTTCACCATCGCTACCTAGCGCTGTGCCGCGCGAAGAACTTCCATCCGTTGCCGGAAATAGTGAAAACTAAAAAGAAGAATCAATCCTTCCTGGACGTGTACGGTGATCGGTTCAAGTGCTACGATTGGCAGCTGATCACGGACGCGCTGCGGGAGGACAATTCCTTGAACCATGTGGCGCTGCGTTTGCGCAAAACCTACACGGAAGGTACGGATGGATTAGTGCCTCACAGCGTACTCGAAGGGAATGGTGCGGAGAAAACCCCACTGATAGACAAACGCACCTTCAAGCAGCTGGTGGAAACGCTGGCCACCTTTCTGCGCACCAACAAGGTGGTGGAGCACTTCACGATCGAAGGCTTCCCGTTGGCAGGTGTACGGCTGTGTACGCTTATAACGGGGCTGTCGCAAAACACTTCCCTGACCGAGCTGAACCTTGCCCGCTGCTCGATCGGCGACGAAGGCTGCAAAGCGCTGTGCGCCGAGATAAAGTTTCTGCCCAACCTGCAGCTCCTAAATCTGACCGCGTGCCAGCTGACCGTTAAAGGGTGCCAGGCCGTGGCGGACGTGATCAAGTTTCAGAAGATGCAGCGCTA]

[+] EMBL BX627371             [AACAGCACGAATGGGAAGCCGGCCGGCCGCAGCGAGCGTCGCAATAGACAGCGCGCCAAGGACTTTCACCATCGCTACCTAGCGCTGTGCCGCGCGAAGAACTTCCATCCGTTGCCGGAAATAGTGAAAACTAAAAAGAAGAATCAATCCTTCCTGGACGTGTACGGTGATCGGTTCAAGTGCTACGATTGGCAGCTGATCACGGACGCGCTGCGGGAGGACAATTCCTTGAACCATGTGGCGCTGCGTTTGCGCAAAACCTACACGGAAGGTACGGATGGATTAGTGCCTCACAGCGTACTCGAAGGGAATGGTGCGGAGAAAACCCCACTGATAGACAAACGCACCTTCAAGCAGCTGGTGGAAACGCTGGCCACCTTTCTGCGCACCAACAAGGTGGTGGAGCACTTCACGATCGAAGGCTTCCCGTTGGCAGGTGTACGGCTGTGTACGCTTATAACGGGGCTGTCGCAAAACACTTCCCTGACCGAGCTGAACCTTGCCCGCTGCTCGATCGGCGACGAAGGCTGCAAAGCGCTGTGCGCCGAGATAAAGTTTCTGCCCAACCTGCAGCTCCTAAATCTGACCGCGTGCCAGCTGACCGTTAAAGGGTGCCAGGCCGTGGCGGACGTGATCAAGTTTCAGAAGATGCAGCGCTA]




>consensus_3163#1
AACAGCACGAATGGGAAGCCGGCCGGCCGCAGCGAGCGTCGCAATAGACAGCGCGCCAAG
GACTTTCACCATCGCTACCTAGCGCTGTGCCGCGCGAAGAACTTCCATCCGTTGCCGGAA
ATAGTGAAAACTAAAAAGAAGAATCAATCCTTCCTGGACGTGTACGGTGATCGGTTCAAG
TGCTACGATTGGCAGCTGATCACGGACGCGCTGCGGGAGGACAATTCCTTGAACCATGTG
GCGCTGCGTTTGCGCAAAACCTACACGGAAGGTACGGATGGATTAGTGCCTCACAGCGTA
CTCGAAGGGAATGGTGCGGAGAAAACCCCACTGATAGACAAACGCACCTTCAAGCAGCTG
GTGGAAACGCTGGCCACCTTTCTGCGCACCAACAAGGTGGTGGAGCACTTCACGATCGAA
GGCTTCCCGTTGGCAGGTGTACGGCTGTGTACGCTTATAACGGGGCTGTCGCAAAACACT
TCCCTGACCGAGCTGAACCTTGCCCGCTGCTCGATCGGCGACGAAGGCTGCAAAGCGCTG
TGCGCCGAGATAAAGTTTCTGCCCAACCTGCAGCTCCTAAATCTGACCGCGTGCCAGCTG
ACCGTTAAAGGGTGCCAGGCCGTGGCGGACGTGATCAAGTTTCAGAAGATGCAGCGCTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3163#0      CATCTCTCCGTGCTGCTTGCATTTTAGTGTCGAGCTCTTCAACATACAGACAAGCAAGCC 60
consensus_3163#1      ------------------------------------------------------------
                                                                                  

consensus_3163#0      CGCAAGAGATGTCCAGCAACACGAACAGCACGAATGGGAAGCCGGCCGGCCGCAGCGAGC 120
consensus_3163#1      -----------------------AACAGCACGAATGGGAAGCCGGCCGGCCGCAGCGAGC 37
                                             *************************************

consensus_3163#0      GTCGCAATAGACAGCGCGCCAAGGACTTTCACCATCGCTACCTAGCGCTGTGCCGCGCGA 180
consensus_3163#1      GTCGCAATAGACAGCGCGCCAAGGACTTTCACCATCGCTACCTAGCGCTGTGCCGCGCGA 97
                      ************************************************************

consensus_3163#0      AGAACTTCCATCCGTTGCCGGAAATAGTGAAAACTAAAAAGAAGAATCAATCCTTCCTGG 240
consensus_3163#1      AGAACTTCCATCCGTTGCCGGAAATAGTGAAAACTAAAAAGAAGAATCAATCCTTCCTGG 157
                      ************************************************************

consensus_3163#0      ACGTGTACGGTTATCGGTTCAAGTGCTACGATTGGCAGCTGATCACGGACGCGCTGCGGG 300
consensus_3163#1      ACGTGTACGGTGATCGGTTCAAGTGCTACGATTGGCAGCTGATCACGGACGCGCTGCGGG 217
                      *********** ************************************************

consensus_3163#0      AGGACAATTCCTTGAACCATGTGGCGCTGCGTTTGCGCAAAACCTACACGGAAGGTA--- 357
consensus_3163#1      AGGACAATTCCTTGAACCATGTGGCGCTGCGTTTGCGCAAAACCTACACGGAAGGTACGG 277
                      *********************************************************   

consensus_3163#0      ---------------ACGACGTG-----------TGGCG--------------------- 370
consensus_3163#1      ATGGATTAGTGCCTCACAGCGTACTCGAAGGGAATGGTGCGGAGAAAACCCCACTGATAG 337
                                     **  ***            *** *                     

consensus_3163#0      --AGATGTA------------------ATATGTTG--TAGTTTTTT---CATAAAAAATG 405
consensus_3163#1      ACAAACGCACCTTCAAGCAGCTGGTGGAAACGCTGGCCACCTTTCTGCGCACCAACAAGG 397
                        * * * *                  * * * **   *  *** *   **  ** ** *

consensus_3163#0      GGAT-------TTC-----------CTTTCGGTTTGGA---------------------A 426
consensus_3163#1      TGGTGGAGCACTTCACGATCGAAGGCTTCCCGTTGGCAGGTGTACGGCTGTGTACGCTTA 457
                       * *       ***           *** * *** * *                     *

consensus_3163#0      CACAGGGGCTGTCGCAAAACACTTCCCTGACCGAGCTGAACCTTGCCCGCTGCTCGATCG 486
consensus_3163#1      TAACGGGGCTGTCGCAAAACACTTCCCTGACCGAGCTGAACCTTGCCCGCTGCTCGATCG 517
                       *  ********************************************************

consensus_3163#0      GCGACGAAGGCTGCAAAGCGCTGTGCGCCGAGATAAAGTTTCTGCCCAACCTGCAGCTCC 546
consensus_3163#1      GCGACGAAGGCTGCAAAGCGCTGTGCGCCGAGATAAAGTTTCTGCCCAACCTGCAGCTCC 577
                      ************************************************************

consensus_3163#0      TAAATCTGACCGCGTGCCAGCTGACCGTTAAAGGGTGCCAGGCCGTGGCGGACGTGATCA 606
consensus_3163#1      TAAATCTGACCGCGTGCCAGCTGACCGTTAAAGGGTGCCAGGCCGTGGCGGACGTGATCA 637
                      ************************************************************

consensus_3163#0      AGTTTCAGAAGATGCAGCGCTACGCCACGAGCTGGGAGCAGTCGCTGCGGTACGGTGACA 666
consensus_3163#1      AGTTTCAGAAGATGCAGCGCTA-------------------------------------- 659
                      **********************                                      

consensus_3163#0      TTAAGGAGGATAAGCTAATGGGTTTGCGATATCTGTACCTGAGCCACAACCCCGGCGATC 726
consensus_3163#1      ------------------------------------------------------------
                                                                                  

consensus_3163#0      GGGGACTACGGGTTGCTCGAGCTGACCGACGTCTTGAANGACG 769
consensus_3163#1      -------------------------------------------