cluster # 3164

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3164 cluster # 3164 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3164#0 length = 552 sequences # 1

consensus_3164#1 length = 510 sequences # 1

consensusID : consensus_3164#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 552
fasta sequence

                              [CCAGAATCGCGCACGAGGGTTACAAATTGAAACCGCAAGTCAAAGCGCGTGAGTGAATTTTGCCGTATCTTCAAAAGGCTTCAGCAGTGCACAGGATGACTCACAGAACTGCGGCCAAGCTGCTGCTGGCAGTTGTATCGCTCTTCTGCGTACTTCAGATGCTGGAATGCGGTGTGGTAGATAGACAACCTCGGGCCTACAAACAGTACAACACGGAACCACAGAAGAGACCGTTCTGCAACGCCTTTACCGGTTGCGGTAAGAAGCGATCGTCTGCCTCGAGTCCACCGACGGCCGCAGCCGCCGCTGCCGCCGCCGCCATGCTACAGGCGACACCTGCAAACCATGGACCCAGGGCGGAAGGACCGTATGGGCAGTGATTTTGACCCGAACGAAGAATCGATCAGCAGTCTGCTCGATCTCAACACGGAACCGGCGGTGGAGGATCTGCTCCGACAGATCATGTCCGAGGCGAAGCTGTGGGGAAGCGATCCAGGAAGCGAACCGGGGAGATTTATCTGCAAAAGTCGGGCATGAAGGACCAGCGCACAT]

[+] EMBL BX466240             [CCAGAATCGCGCACGAGGGTTACAAATTGAAACCGCAAGTCAAAGCGCGTGAGTGAATTTTGCCGTATCTTCAAAAGGCTTCAGCAGTGCACAGGATGACTCACAGAACTGCGGCCAAGCTGCTGCTGGCAGTTGTATCGCTCTTCTGCGTACTTCAGATGCTGGAATGCGGTGTGGTAGATAGACAACCTCGGGCCTACAAACAGTACAACACGGAACCACAGAAGAGACCGTTCTGCAACGCCTTTACCGGTTGCGGTAAGAAGCGATCGTCTGCCTCGAGTCCACCGACGGCCGCAGCCGCCGCTGCCGCCGCCGCCATGCTACAGGCGACACCTGCAAACCATGGACCCAGGGCGGAAGGACCGTATGGGCAGTGATTTTGACCCGAACGAAGAATCGATCAGCAGTCTGCTCGATCTCAACACGGAACCGGCGGTGGAGGATCTGCTCCGACAGATCATGTCCGAGGCGAAGCTGTGGGGAAGCGATCCAGGAAGCGAACCGGGGAGATTTATCTGCAAAAGTCGGGCATGAAGGACCAGCGCACAT]




>consensus_3164#0
CCAGAATCGCGCACGAGGGTTACAAATTGAAACCGCAAGTCAAAGCGCGTGAGTGAATTT
TGCCGTATCTTCAAAAGGCTTCAGCAGTGCACAGGATGACTCACAGAACTGCGGCCAAGC
TGCTGCTGGCAGTTGTATCGCTCTTCTGCGTACTTCAGATGCTGGAATGCGGTGTGGTAG
ATAGACAACCTCGGGCCTACAAACAGTACAACACGGAACCACAGAAGAGACCGTTCTGCA
ACGCCTTTACCGGTTGCGGTAAGAAGCGATCGTCTGCCTCGAGTCCACCGACGGCCGCAG
CCGCCGCTGCCGCCGCCGCCATGCTACAGGCGACACCTGCAAACCATGGACCCAGGGCGG
AAGGACCGTATGGGCAGTGATTTTGACCCGAACGAAGAATCGATCAGCAGTCTGCTCGAT
CTCAACACGGAACCGGCGGTGGAGGATCTGCTCCGACAGATCATGTCCGAGGCGAAGCTG
TGGGGAAGCGATCCAGGAAGCGAACCGGGGAGATTTATCTGCAAAAGTCGGGCATGAAGG
ACCAGCGCACAT

consensusID : consensus_3164#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 510
fasta sequence

                              [CCGGAACCGGGAAGGCTCAAGCACGCAGCTACTTAGCTTGTTTCCGTAAGAGGATTTCCCTTTACATAGTGAGCGATTTCGACTGATCCCGTGAGATTGTGAATTTGAAAAAAGCAACAAAACACATACACATACCCATTCCGTGGAAACTCACATGTGCTGGCGTGCTTTTTGTTGGTGATCGCACGAGGTAACCCATACGTTTGGTGAGCAGTGTTCCTGGTGCATCGAACGTACTGTATCGTTTTGCTGAACCTGACAAATTGAAACCGCAAGTCTAAGCGCGTGAGTGAATTTTGCCGTATCTTCAAAAGGCTTCAGCAGTGCACAGGATGACTCACAGAACTGCGGCCAAGCTGCTGATGGCAGTTGTATCGCTCTTCTGCGTACTTCAGATGCTGGAATGCGGTGTGGTAGATAGACAACCTCGGGCCTACAAACAGTACAACACGGAACCACAGAAGAGACCGTTCTGCAACGCCTTTACCGGTTGCGGTAAGAAGCGATCGT]

[+] EMBL BM642993             [CCGGAACCGGGAAGGCTCAAGCACGCAGCTACTTAGCTTGTTTCCGTAAGAGGATTTCCCTTTACATAGTGAGCGATTTCGACTGATCCCGTGAGATTGTGAATTTGAAAAAAGCAACAAAACACATACACATACCCATTCCGTGGAAACTCACATGTGCTGGCGTGCTTTTTGTTGGTGATCGCACGAGGTAACCCATACGTTTGGTGAGCAGTGTTCCTGGTGCATCGAACGTACTGTATCGTTTTGCTGAACCTGACAAATTGAAACCGCAAGTCTAAGCGCGTGAGTGAATTTTGCCGTATCTTCAAAAGGCTTCAGCAGTGCACAGGATGACTCACAGAACTGCGGCCAAGCTGCTGATGGCAGTTGTATCGCTCTTCTGCGTACTTCAGATGCTGGAATGCGGTGTGGTAGATAGACAACCTCGGGCCTACAAACAGTACAACACGGAACCACAGAAGAGACCGTTCTGCAACGCCTTTACCGGTTGCGGTAAGAAGCGATCGT]




>consensus_3164#1
CCGGAACCGGGAAGGCTCAAGCACGCAGCTACTTAGCTTGTTTCCGTAAGAGGATTTCCC
TTTACATAGTGAGCGATTTCGACTGATCCCGTGAGATTGTGAATTTGAAAAAAGCAACAA
AACACATACACATACCCATTCCGTGGAAACTCACATGTGCTGGCGTGCTTTTTGTTGGTG
ATCGCACGAGGTAACCCATACGTTTGGTGAGCAGTGTTCCTGGTGCATCGAACGTACTGT
ATCGTTTTGCTGAACCTGACAAATTGAAACCGCAAGTCTAAGCGCGTGAGTGAATTTTGC
CGTATCTTCAAAAGGCTTCAGCAGTGCACAGGATGACTCACAGAACTGCGGCCAAGCTGC
TGATGGCAGTTGTATCGCTCTTCTGCGTACTTCAGATGCTGGAATGCGGTGTGGTAGATA
GACAACCTCGGGCCTACAAACAGTACAACACGGAACCACAGAAGAGACCGTTCTGCAACG
CCTTTACCGGTTGCGGTAAGAAGCGATCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3164#0      ------------------------------------------------------------
consensus_3164#1      CCGGAACCGGGAAGGCTCAAGCACGCAGCTACTTAGCTTGTTTCCGTAAGAGGATTTCCC 60
                                                                                  

consensus_3164#0      ------------------------------------------------------------
consensus_3164#1      TTTACATAGTGAGCGATTTCGACTGATCCCGTGAGATTGTGAATTTGAAAAAAGCAACAA 120
                                                                                  

consensus_3164#0      ------------------------------------------------------------
consensus_3164#1      AACACATACACATACCCATTCCGTGGAAACTCACATGTGCTGGCGTGCTTTTTGTTGGTG 180
                                                                                  

consensus_3164#0      -------------------------------------------------------CCAGA 5
consensus_3164#1      ATCGCACGAGGTAACCCATACGTTTGGTGAGCAGTGTTCCTGGTGCATCGAACGTACTGT 240
                                                                              * * 

consensus_3164#0      ATCGCGCA--CGAGGGTTACAAATTGAAACCGCAAGTCAAAGCGCGTGAGTGAATTTTGC 63
consensus_3164#1      ATCGTTTTGCTGAACCTGACAAATTGAAACCGCAAGTCTAAGCGCGTGAGTGAATTTTGC 300
                      ****       **   * ******************** *********************

consensus_3164#0      CGTATCTTCAAAAGGCTTCAGCAGTGCACAGGATGACTCACAGAACTGCGGCCAAGCTGC 123
consensus_3164#1      CGTATCTTCAAAAGGCTTCAGCAGTGCACAGGATGACTCACAGAACTGCGGCCAAGCTGC 360
                      ************************************************************

consensus_3164#0      TGCTGGCAGTTGTATCGCTCTTCTGCGTACTTCAGATGCTGGAATGCGGTGTGGTAGATA 183
consensus_3164#1      TGATGGCAGTTGTATCGCTCTTCTGCGTACTTCAGATGCTGGAATGCGGTGTGGTAGATA 420
                      ** *********************************************************

consensus_3164#0      GACAACCTCGGGCCTACAAACAGTACAACACGGAACCACAGAAGAGACCGTTCTGCAACG 243
consensus_3164#1      GACAACCTCGGGCCTACAAACAGTACAACACGGAACCACAGAAGAGACCGTTCTGCAACG 480
                      ************************************************************

consensus_3164#0      CCTTTACCGGTTGCGGTAAGAAGCGATCGTCTGCCTCGAGTCCACCGACGGCCGCAGCCG 303
consensus_3164#1      CCTTTACCGGTTGCGGTAAGAAGCGATCGT------------------------------ 510
                      ******************************                              

consensus_3164#0      CCGCTGCCGCCGCCGCCATGCTACAGGCGACACCTGCAAACCATGGACCCAGGGCGGAAG 363
consensus_3164#1      ------------------------------------------------------------
                                                                                  

consensus_3164#0      GACCGTATGGGCAGTGATTTTGACCCGAACGAAGAATCGATCAGCAGTCTGCTCGATCTC 423
consensus_3164#1      ------------------------------------------------------------
                                                                                  

consensus_3164#0      AACACGGAACCGGCGGTGGAGGATCTGCTCCGACAGATCATGTCCGAGGCGAAGCTGTGG 483
consensus_3164#1      ------------------------------------------------------------
                                                                                  

consensus_3164#0      GGAAGCGATCCAGGAAGCGAACCGGGGAGATTTATCTGCAAAAGTCGGGCATGAAGGACC 543
consensus_3164#1      ------------------------------------------------------------
                                                                                  

consensus_3164#0      AGCGCACAT 552
consensus_3164#1      ---------