These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3168#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence [CCCCGAGGGACGCTGCAGAGATCGAAGACTACTTTTCGGGTCGCACTAAAACGCTTAAGAAGCCGAAAGCGGGCACCAACGGTCAGCAGAACGACGAGAACGATGGTCAACAAATGCTGCTGGCCAATGGTACGAAGCCAGCCGTGCTTTCGTCCGAAAAGAACAAATTGCTTCCATAACGAAGCACAAGCTATTTCACCAGCCATCCAGTGCTTCTAGGGCGATCTTGTTCCTACGGTCCCTATTCTGGTTACACGGATTTTCTCACTGCAATCAGACGACCCATTACGATCAGCCCGGGCTAGCGTGTTGCAAAAGCAAGTCCAGCAAGTTCTGGCAATGTTTTTCTTTGTATTGATTAAGCTGTTCATCGCTCCATAACTCTACGCGTTTCGATAATTTTACCCACTCAGACACTAAGTATTACTAGGAAAACGTATTCGATATGCGTAGGAAACGGAANAGGACGTGTACAATGTGCATAAGGATCTTGCGTATATATGCATAAGAACATGGGTAGTCAACCTGATTGCCACAACAACGCAAGAAANAGGACAACAATAACAATTGATCGTNTGTGACGCACGTAAGACACAATCAACTTGCTGCNACGGTAGTATATCCGCGAACTATCAACTTATTCACTTACACACCGGAAG] [+] EMBL AL931870 [CCCCGAGGGACGCTGCAGAGATCGAAGACTACTTTTCGGGTCGCACTAAAACGCTTAAGAAGCCGAAAGCGGGCACCAACGGTCAGCAGAACGACGAGAACGATGGTCAACAAATGCTGCTGGCCAATGGTACGAAGCCAGCCGTGCTTTCGTCCGAAAAGAACAAATTGCTTCCATAACGAAGCACAAGCTATTTCACCAGCCATCCAGTGCTTCTAGGGCGATCTTGTTCCTACGGTCCCTATTCTGGTTACACGGATTTTCTCACTGCAATCAGACGACCCATTACGATCAGCCCGGGCTAGCGTGTTGCAAAAGCAAGTCCAGCAAGTTCTGGCAATGTTTTTCTTTGTATTGATTAAGCTGTTCATCGCTCCATAACTCTACGCGTTTCGATAATTTTACCCACTCAGACACTAAGTATTACTAGGAAAACGTATTCGATATGCGTAGGAAACGGAANAGGACGTGTACAATGTGCATAAGGATCTTGCGTATATATGCATAAGAACATGGGTAGTCAACCTGATTGCCACAACAACGCAAGAAANAGGACAACAATAACAATTGATCGTNTGTGACGCACGTAAGACACAATCAACTTGCTGCNACGGTAGTATATCCGCGAACTATCAACTTATTCACTTACACACCGGAAG] consensusID : consensus_3168#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence [CAAGAATCCGCACGAGTGGAACGACGAGAACGATGGTCAACCAAATGCTGCTGGCCAATGGTACGAAGCCAGCCGTGCTTTCGCCCGAAAAGAACAAATTGCTTCCATAACGAAGCACAAGCTATTTCACCAGCCATCCAGTGCTTCTAGGGCGATCTTGTTCCTACGTCCCTATTCTGGTTACACGGATTTTCTCACTGCAATCAGACGACCCATTACGATCAGCCCGGGCTAGCGTGTTGCAAAAGCAAGTCCAGCAAGTTCTGGCAATGTTTTTCTTTGTATTGATTAAGCTGTTCATCGGCGTCCATAACTCTACGCGTTTCGATAATTTTACCCACTCAGACACTAAGTATTACTAGGAAAACGTATTCGATATGCGTAGGAAACGGAAAGGAGTGTACAAGTGTGCATAAGGATCTTGCGTATATATGANTAAGAA] [+] EMBL BX466106 [CAAGAATCCGCACGAGTGGAACGACGAGAACGATGGTCAACCAAATGCTGCTGGCCAATGGTACGAAGCCAGCCGTGCTTTCGCCCGAAAAGAACAAATTGCTTCCATAACGAAGCACAAGCTATTTCACCAGCCATCCAGTGCTTCTAGGGCGATCTTGTTCCTACGTCCCTATTCTGGTTACACGGATTTTCTCACTGCAATCAGACGACCCATTACGATCAGCCCGGGCTAGCGTGTTGCAAAAGCAAGTCCAGCAAGTTCTGGCAATGTTTTTCTTTGTATTGATTAAGCTGTTCATCGGCGTCCATAACTCTACGCGTTTCGATAATTTTACCCACTCAGACACTAAGTATTACTAGGAAAACGTATTCGATATGCGTAGGAAACGGAAAGGAGTGTACAAGTGTGCATAAGGATCTTGCGTATATATGANTAAGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3168#0 CCCCGAGGGACGCTGCAGAGATCGAAGACTACTTTTCGGGTCGCACTAAAACGCTTAAGA 60 consensus_3168#1 ------------------------------------------------------------ consensus_3168#0 AGCCGAAAGCGGGCACCAACGGTCAGCAGAACGACGAGAACGATGGTCAAC-AAATGCTG 119 consensus_3168#1 ---------CAAGAATCCGCA-CGAGTGGAACGACGAGAACGATGGTCAACCAAATGCTG 50 * * * * * ** *********************** ******** consensus_3168#0 CTGGCCAATGGTACGAAGCCAGCCGTGCTTTCGTCCGAAAAGAACAAATTGCTTCCATAA 179 consensus_3168#1 CTGGCCAATGGTACGAAGCCAGCCGTGCTTTCGCCCGAAAAGAACAAATTGCTTCCATAA 110 ********************************* ************************** consensus_3168#0 CGAAGCACAAGCTATTTCACCAGCCATCCAGTGCTTCTAGGGCGATCTTGTTCCTACGGT 239 consensus_3168#1 CGAAGCACAAGCTATTTCACCAGCCATCCAGTGCTTCTAGGGCGATCTTGTTCCTACG-T 169 ********************************************************** * consensus_3168#0 CCCTATTCTGGTTACACGGATTTTCTCACTGCAATCAGACGACCCATTACGATCAGCCCG 299 consensus_3168#1 CCCTATTCTGGTTACACGGATTTTCTCACTGCAATCAGACGACCCATTACGATCAGCCCG 229 ************************************************************ consensus_3168#0 GGCTAGCGTGTTGCAAAAGCAAGTCCAGCAAGTTCTGGCAATGTTTTTCTTTGTATTGAT 359 consensus_3168#1 GGCTAGCGTGTTGCAAAAGCAAGTCCAGCAAGTTCTGGCAATGTTTTTCTTTGTATTGAT 289 ************************************************************ consensus_3168#0 TAAGCTGTTCATCGC--TCCATAACTCTACGCGTTTCGATAATTTTACCCACTCAGACAC 417 consensus_3168#1 TAAGCTGTTCATCGGCGTCCATAACTCTACGCGTTTCGATAATTTTACCCACTCAGACAC 349 ************** ******************************************* consensus_3168#0 TAAGTATTACTAGGAAAACGTATTCGATATGCGTAGGAAACGGAANAGGACGTGTACAAT 477 consensus_3168#1 TAAGTATTACTAGGAAAACGTATTCGATATGCGTAGGAAACGGAAAGGAGTGTACA-AGT 408 ********************************************* * ** * * * consensus_3168#0 GTGCATAAGGATCTTGCGTATATATGCATAAGAACATGGGTAGTCAACCTGATTGCCACA 537 consensus_3168#1 GTGCATAAGGATCTTGCGTATATATGANTAAGAA-------------------------- 442 ************************** ****** consensus_3168#0 ACAACGCAAGAAANAGGACAACAATAACAATTGATCGTNTGTGACGCACGTAAGACACAA 597 consensus_3168#1 ------------------------------------------------------------ consensus_3168#0 TCAACTTGCTGCNACGGTAGTATATCCGCGAACTATCAACTTATTCACTTACACACCGGA 657 consensus_3168#1 ------------------------------------------------------------ consensus_3168#0 AG 659 consensus_3168#1 -- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||