These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3178#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1114 fasta sequence [CCGCGCTGATCAAGCACTCTGGCCCAAAGCAAACGAAGGAGGAAATGCAGCGAATACAGAACGCCGAACGATCGACGAGTAACTCGGAAAATCAAACCTTTCTAAAGGATCTGGTCAACCAGGTCCTAGCCGGGGAGGGCGTTGGATGGCTGAAGCTGAACCGACTCAAGAAACTGATGGAGGACGAATCGTATCGTATGCTGGTGCTGGGAAAGCTCAACAGGACGCTAGAGCGAAAGATTGGCCCAGACGACCATATCGACGACGTGTGCATATCGAAAGCAGTGTACAAAGGAACGCTCAAGTGTTTGTTGGCGATAACGCACGGGCTGGAGCACACGATAGGGAACTTTGGTCTCGGCGGGATGGCGTCCGTGTTTCAAATGATGGAAATCGCTCACACGCACTACTGGAGCAAGGATTTAAGTGAAGGTGCGGGTTCCGAGATGTCTGCCAGCTTGCTGTCCAGCCAGAGCGTAAGTCCGATGGGCAGTCGGGAGAACCTAAGGTCACCCCAAAGCCCCACGGAGCTGTCGGATTGGATGCTGGGTGGCTCTCGCAAAAGCTCCAGTGCTAACAACGACCATATCGCCCTCTCGCGTCACCCGTCGGAGAACGAGCAGGAGAACCAATCTACGTCGGAAATGTTCAAGGACATGCTGTCCCTGAAACGGAATGTGTTGTTCAACAAGCTGACATCCTTTGAGTCGGAGGGTAGCATTGCGATGCAAGATTCATCTGGGACATTATCTGTCGCTAGTGACGTTTTGCCGCAACAGCAATCCGGTGACTTTTTGGCTACCTCTATCCCTTGCCGTTCGACGGTGTCGGATACCGAGTATGAGAAATTTCCGAAAAGCTCCACCCTGAAGGACGCAAAAAAGATGGCGGGTGGTATATTTTCCGGCAAGTCATCACTAAGTGCGGGCTTTCGCTACACTGGCGGCAGCCTAATTCCGTCGTCCGGGTCGCCTTCGCCGGATGCGCCCCGGGTGTATCTGTTCGAGGGGCTGCTAGGTAAGGATCGGTCCAGCATCTGGGACCAGATGCAGTTCTGGGAAGACGCGTTCCTGGACGCGGTCAGCCAGGAGCGGGACATGATCGGCATGGATCA] [+] EMBL BM636574 [CCGCGCTGATCAAGCACTCTGGCCCAAAGCAAACGAAGGAGGAAATGCAGCGAATACAGAACGCCGAACGATCGACGAGTAACTCGGAAAATCAAACCTTTCTAAAGGATCTGGTCAACCAGGTCCTAGCCGGGGAGGGCGTTGGATGGCTGAAGCTGAACCGACTCAAGAAACTGATGGAGGACGAATCGTATCGTATGCTGGTGCTGGGAAAGCTCAACAGGACGCTAGAGCGAAAGATTGGCCCAGACGACCATATCGACGACGTGTGCATATCGAAAGCAGTGTACAAAGGAACGCTCAAGTGTTTGTTGGCGATAACGCACGGGCTGGAGCACACGATAGGGAACTTTGGTCTCGGCGGGATGGCGTCCGTGTTTCAAATGATGGAAATCGCTCACACGCACTACTGGAGCAAGGATTTAAGTGAAGGTGCGGGTTCCGAGATGTCTGCCAGCTTGCTGTCCAGCCAGAGCGTAAGTCCGATGGGCAGTCGGGAGAACCTAAGGTCACCCCAAAGCCCCACGGAGCTGTCGGATTGGATGCTGGGTGGCTCTCGCAAAAGCTCCAGTGCTAACAACGACCATATCGCCCTCTCGCGTCACCCGTCGGAGAACGAGCAGGAGAACCAATCTACGTCGGAAATGTTCAAGGACATGCTGTCCCTGAAACGGAATGTGTTGTTCAACAA ] [+] EMBL BM586247 [ cCGGAGCTGTCGGATTGGATGCTGGGTGGCTCTCGCAAAAGCTCCAGTGCTAACAACGACCATATCGCCCTCTCGCGTCACCCGTCGGAGAACGAGCAGGAGAACCAATCTACGTCGGAAATGTTCAAGGACATGCTGTCCCTGAAACGGAATGTGTTGTTCAACAAGCTGACATCCTTTGAGTCGGAGGGTAGCATTGCGATGCAAGATTCATCTGGGACATTATCTGTCGCTAGTGACGTTTTGCCGCAACAGCAATCCGGTGACTTTTTGGCTACCTCTATCCCTTGCCGTTCGACGGTGTCGGATACCGAGTATGAGAAATTTCCGAAAAGCTCCACCCTGAAGGACGCAAAAAAGATGGCGGGTGGTATATTTTCCGGCAAGTCATCACTAAGTGCGGGCTTTCGCTACACTGGCGGCAGCCTAATTCCGTCGTCCGGGTCGCCTTCGCCGGATGCGCCCCGGGTGTATCTGTTCGAGGGGCTGCTAGGTAAGGATCGGTCCAGCATCTGGGACCAGATGCAGTTCTGGGAAGACGCGTTCCTGGACGCGGTCAGCCAGGAGCGGGACATGATCGGCATGGATCA] consensusID : consensus_3178#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 697 fasta sequence [CCGGCTCGACGCCTTAGTCGCCAATACCGTACCCAGTAGGAAAATTTGATCCTCAAGCCACGTTCACTGTTGTTCGACTTTTTGTTTTCGTTTTGTTGTATTATAGTACAATCTGATCCTAATCGGAATGCCCTGAAACGTACCTTTATGTGTGTTCGATAGTTATGTTTGTGTTTTGTTTGGCTCTGTGTTAGTTTGGATTTGTTTTCGACCAGAAAAAAAAATGCGATACCATTTCGGTCCGATCTGTCCTTGCCGCTCACCATCCATTAACTTATCCTCAGATCCCTTTCGAGCAGTATATTCGCTTCTCTACATCTCTATGTGTACGCTTGAAATTTGTGTCTCCTCGCCTTTTACAACACAGGGTAGCATTGCGATGCAAGATTCATCTGGGACATTATCTGTCGCTAGTGACGTTTTGCCGCAACAGCAATCCGGTGACTTTTTGGCTACCTCTATCTCTTGCCGTTCGACGGTGTCGGATACCGAGTATGAGAAATTTCCGAAAAGCTCCACCCTGAAGGACGCAAAAAAGATGGCGGGTGGTATATTTTCCGGCAAGTCATCACTAAGTGCGGGCTTTCGCTACACTGGCGGCAGCCTAATTCCGTCGTCCGGGTCGCCTTCGCCGGATGCGCCCCGGGTGTATCTGTTCGAGGGGCTGCTAGGTAAGGATCGGTCCAGCATCTGGGAC] [+] EMBL BM600200 [CCGGCTCGACGCCTTAGTCGCCAATACCGTACCCAGTAGGAAAATTTGATCCTCAAGCCACGTTCACTGTTGTTCGACTTTTTGTTTTCGTTTTGTTGTATTATAGTACAATCTGATCCTAATCGGAATGCCCTGAAACGTACCTTTATGTGTGTTCGATAGTTATGTTTGTGTTTTGTTTGGCTCTGTGTTAGTTTGGATTTGTTTTCGACCAGAAAAAAAAATGCGATACCATTTCGGTCCGATCTGTCCTTGCCGCTCACCATCCATTAACTTATCCTCAGATCCCTTTCGAGCAGTATATTCGCTTCTCTACATCTCTATGTGTACGCTTGAAATTTGTGTCTCCTCGCCTTTTACAACACAGGGTAGCATTGCGATGCAAGATTCATCTGGGACATTATCTGTCGCTAGTGACGTTTTGCCGCAACAGCAATCCGGTGACTTTTTGGCTACCTCTATCTCTTGCCGTTCGACGGTGTCGGATACCGAGTATGAGAAATTTCCGAAAAGCTCCACCCTGAAGGACGCAAAAAAGATGGCGGGTGGTATATTTTCCGGCAAGTCATCACTAAGTGCGGGCTTTCGCTACACTGGCGGCAGCCTAATTCCGTCGTCCGGGTCGCCTTCGCCGGATGCGCCCCGGGTGTATCTGTTCGAGGGGCTGCTAGGTAAGGATCGGTCCAGCATCTGGGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3178#0 CCGCGCTGATCAAGCACTCTGGCCCAAAGCAAACGAAGGAGGAAATGCAGCGAATACAGA 60 consensus_3178#1 ------------------------------------------------------------ consensus_3178#0 ACGCCGAACGATCGACGAGTAACTCGGAAAATCAAACCTTTCTAAAGGATCTGGTCAACC 120 consensus_3178#1 ------------------------------------------------------------ consensus_3178#0 AGGTCCTAGCCGGGGAGGGCGTTGGATGGCTGAAGCTGAACCGACTCAAGAAACTGATGG 180 consensus_3178#1 ------------------------------------------------------------ consensus_3178#0 AGGACGAATCGTATCGTATGCTGGTGCTGGGAAAGCTCAACAGGACGCTAGAGCGAAAGA 240 consensus_3178#1 ------------------------------------------------------------ consensus_3178#0 TTGGCCCAGACGACCATATCGACGACGTGTGCATATCGAAAGCAGTGTACAAAGGAACGC 300 consensus_3178#1 -------------------------------------------------------CCGGC 5 ** consensus_3178#0 TCAA-GTGTTTGTTGGCGATAACGCACGGGCTGGAGCACACGATAGGGAACTTTGGTCTC 359 consensus_3178#1 TCGACGCCTTAGTCGCCAATACCGTACC------------CAGTAGGAAAATTTGATCCT 53 ** * * ** ** * * *** ** ** * **** ** **** ** consensus_3178#0 GGCGGGATGGCGTCCGTGTTTCAAATGATGGAAATCGCTCACACGCACTACTGGAGCAAG 419 consensus_3178#1 CAAGCCACGTTCACTGTTGTTCGACTTTTTGTTTTCGTTT---TGTTGTATTATAGTACA 110 * * * * ** *** * * * * *** * * ** * ** * consensus_3178#0 GATTTAAGTGAAGGTGCGGGTTCCGAGATGTCTGCCAGCTTGCTGTCCAGCCAGAGCGTA 479 consensus_3178#1 ATCTGATCCTAATCGGAATGCCCTGAAACGT-----ACCTTTATGTGTGTTCGATAGTTA 165 * * ** * * * ** * ** * *** *** * ** consensus_3178#0 AGTCCGATGGGCAGTCGGGAGAACCTAAGGTCACCCCAAAGCCCCACGGAGCTGTCGGAT 539 consensus_3178#1 TGTTTG-TGTTTTGTTTGG----CTCTGTGTTAGTTTGGATTTGTTTTCGACCAGAAAAA 220 ** * ** ** ** * ** * * * * consensus_3178#0 TGGATGCTGGGTGGCTCTCGCAAAAGCT-CCAGTGCTAACAACGACCATATCGCCCTCTC 598 consensus_3178#1 AAAATGCGATACCATTTCGGTCCGATCTGTCCTTGCCGCTCACCATC-CATTAACTTATC 279 **** * * * ** * *** ** * * ** * * ** consensus_3178#0 GCGTCACCCGTCGGAGAACGAGCAGGAGAACCAATCTACGTCGGAAATGTTCAAGGACAT 658 consensus_3178#1 CTCAGATCCCTTT-----CGAGCAGTATATTCGCTTCTCT----ACATCTCTATGTGTAC 330 * ** * ******* * * * * * * ** * * * * consensus_3178#0 GCTGTCCCTGAAACGGAATGTGTTGTTCAACAAGCTGACATCCTTTGAGTCGGAGGGTAG 718 consensus_3178#1 GCT----------TGAAATTTGTGTCTC------CT--CGCCTTTTACAACACAGGGTAG 372 *** * *** *** ** ** * * *** * ******* consensus_3178#0 CATTGCGATGCAAGATTCATCTGGGACATTATCTGTCGCTAGTGACGTTTTGCCGCAACA 778 consensus_3178#1 CATTGCGATGCAAGATTCATCTGGGACATTATCTGTCGCTAGTGACGTTTTGCCGCAACA 432 ************************************************************ consensus_3178#0 GCAATCCGGTGACTTTTTGGCTACCTCTATCCCTTGCCGTTCGACGGTGTCGGATACCGA 838 consensus_3178#1 GCAATCCGGTGACTTTTTGGCTACCTCTATCTCTTGCCGTTCGACGGTGTCGGATACCGA 492 ******************************* **************************** consensus_3178#0 GTATGAGAAATTTCCGAAAAGCTCCACCCTGAAGGACGCAAAAAAGATGGCGGGTGGTAT 898 consensus_3178#1 GTATGAGAAATTTCCGAAAAGCTCCACCCTGAAGGACGCAAAAAAGATGGCGGGTGGTAT 552 ************************************************************ consensus_3178#0 ATTTTCCGGCAAGTCATCACTAAGTGCGGGCTTTCGCTACACTGGCGGCAGCCTAATTCC 958 consensus_3178#1 ATTTTCCGGCAAGTCATCACTAAGTGCGGGCTTTCGCTACACTGGCGGCAGCCTAATTCC 612 ************************************************************ consensus_3178#0 GTCGTCCGGGTCGCCTTCGCCGGATGCGCCCCGGGTGTATCTGTTCGAGGGGCTGCTAGG 1018 consensus_3178#1 GTCGTCCGGGTCGCCTTCGCCGGATGCGCCCCGGGTGTATCTGTTCGAGGGGCTGCTAGG 672 ************************************************************ consensus_3178#0 TAAGGATCGGTCCAGCATCTGGGACCAGATGCAGTTCTGGGAAGACGCGTTCCTGGACGC 1078 consensus_3178#1 TAAGGATCGGTCCAGCATCTGGGAC----------------------------------- 697 ************************* consensus_3178#0 GGTCAGCCAGGAGCGGGACATGATCGGCATGGATCA 1114 consensus_3178#1 ------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||