cluster # 3182

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Anopheles gambiae
cluster # 3182 cluster # 3182 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3182#0 length = 1109 sequences # 2

consensus_3182#1 length = 551 sequences # 1

consensusID : consensus_3182#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1109
fasta sequence

                              [TTGTGCATGGTGAGGAAAACGAGAACCGACCGATGTTTGTTGTTGTTGATCATTTAAATTTTACACGTCTATACATGCATATATGACTAAATGACTTCTTAAATGTTGACATTAGGCGGAATGTGGCGGGTTGTTTAGCGCGACTGTAGAGCGTTGAAGAAAGCAGCGCACACAAGGTGGTTAATGCCAGCACCAAAATAACTTTATATGCACCGTAACACTACAAAACAAAAAACAACCACCCCAGGCACCAGGCACAGCGAGTTTTAACTATTAGAAAGCAAATTCGTACTCAAGATGCAACATTTGCATCGACAGGCGAGTAGACTAAGTAAGATATACCGACGGGAGGGAGAAAGAAGGGTTCCCGAAATATGTCCACAATTTGAATTTCTTCTCGTCGCGGCGGGTGGGTGAGAGTGAAAATGAAAATGGATCTCTCGACAGCAGAGAGGAGGAGGATGAGGATGAGGAGAAGGGGCGAAGCGTTGATGATGTGTAGAGCACCAACAACCCCTGCAACTCCGAAAAGAAGTAAGATAGAGCATCAGCAGCAGCCTTTTTACAAACAATGGAAAACAAACACCACACCAACGGAACTAGGGAAAACAAACACAGAAACAGCGTACTGAATGTATAGAGAAACTCTAATTAGATGAAGAAGAAACGAAGAAGAAAAAACTATTATAAACCATCAGCAAAGAATAATCCCACCCATATTTGTGGTGTACTACAAGACAACCTACTAGGAGAGGTACTACTAAATTACCAAATGTTTCATCATCTCAACCTTTTTTTCATTTTAGTGTAAAACAAACAAACAAAAGCGTATGTGATTGTACAAGAGCTACACAGCGATGAGATGAGCGAACGGCGGGTGAAGGACTCTATTTAAGCAGCAAAAAGAAACGCATGAGAAGTGAAACGCAAACCCCTCTCTACACAGTTGCATTCGAGACAATTGGTGTGAAAAGAGAAGACCAGTCAGTGTACTTGTTGCACTTTGGTTTGGTGAGAGCTATCCTTCTCGAATCTCAATATTAGTGTACCGAAAAATGCATCCCCACACGTGGGCGCGTGGTAAACGTGTCTTTTTGAAGCTATTATGA]

[+] EMBL BX620584             [TTGTGCATGGTGAGGAAAACGAGAACCGACCGATGTTTGTTGTTGTTGATCATTTAAATTTTACACGTCTATACATGCATATATGACTAAATGACTTCTTAAATGTTGACATTAGGCGGAATGTGGCGGGTTGTTTAGCGCGACTGTAGAGCGTTGAAGAAAGCAGCGCACACAAGGTGGTTAATGCCAGCACCAAAATAACTTTATATGCACCGTAACACTACAAAACAAAAAACAACCACCCCAGGCACCAGGCACAGCGAGTTTTAACTATTAGAAAGCAAATTCGTACTCAAGATGCAACATTTGCATCGACAGGCGAGTAGACTAAGTAAGATATACCGACGGGAGGGAGAAAGAAGGGTTCCCGAAATATGTCCACAATTTGAATTTCTTCTCGTCGCGGCGGGTGGGTGAGAGTGAAAATGAAAATGGATCTCTCGACAGCAGAGAGGAGGAGGATGAGGATGAGGAGAAGGGGCGAAGCGTTGATGATGTGTAGAGCACCAACAACCCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BM631428             [                                                                                                                                                                                                                                                                                                                                                                                                                              TGAGAGTGAAAATGAAAATGGATCTCTCGACAGCAGAGAGGAGGAGGATGAGGATGAGGAGAAGGGGCGAAGCGTTGATGATGTGTAGAGCACCAACAACCCCTGCAACTCCGAAAAGAAGTAAGATAGAGCATCAGCAGCAGCCTTTTTACAAACAATGGAAAACAAACACCACACCAACGGAACTAGGGAAAACAAACACAGAAACAGCGTACTGAATGTATAGAGAAACTCTAATTAGATGAAGAAGAAACGAAGAAGAAAAAACTATTATAAACCATCAGCAAAGAATAATCCCACCCATATTTGTGGTGTACTACAAGACAACCTACTAGGAGAGGTACTACTAAATTACCAAATGTTTCATCATCTCAACCTTTTTTTCATTTTAGTGTAAAACAAACAAACAAAAGCGTATGTGATTGTACAAGAGCTACACAGCGATGAGATGAGCGAACGGCGGGTGAAGGACTCTATTTAAGCAGCAAAAAGAAACGCATGAGAAGTGAAACGCAAACCCCTCTCTACACAGTTGCATTCGAGACAATTGGTGTGAAAAGAGAAGACCAGTCAGTGTACTTGTTGCACTTTGGTTTGGTGAGAGCTATCCTTCTCGAATCTCAATATTAGTGTACCGAAAAATGCATCCCCACACGTGGGCGCGTGGTAAACGTGTCTTTTTGAAGCTATTATGA]




>consensus_3182#0
TTGTGCATGGTGAGGAAAACGAGAACCGACCGATGTTTGTTGTTGTTGATCATTTAAATT
TTACACGTCTATACATGCATATATGACTAAATGACTTCTTAAATGTTGACATTAGGCGGA
ATGTGGCGGGTTGTTTAGCGCGACTGTAGAGCGTTGAAGAAAGCAGCGCACACAAGGTGG
TTAATGCCAGCACCAAAATAACTTTATATGCACCGTAACACTACAAAACAAAAAACAACC
ACCCCAGGCACCAGGCACAGCGAGTTTTAACTATTAGAAAGCAAATTCGTACTCAAGATG
CAACATTTGCATCGACAGGCGAGTAGACTAAGTAAGATATACCGACGGGAGGGAGAAAGA
AGGGTTCCCGAAATATGTCCACAATTTGAATTTCTTCTCGTCGCGGCGGGTGGGTGAGAG
TGAAAATGAAAATGGATCTCTCGACAGCAGAGAGGAGGAGGATGAGGATGAGGAGAAGGG
GCGAAGCGTTGATGATGTGTAGAGCACCAACAACCCCTGCAACTCCGAAAAGAAGTAAGA
TAGAGCATCAGCAGCAGCCTTTTTACAAACAATGGAAAACAAACACCACACCAACGGAAC
TAGGGAAAACAAACACAGAAACAGCGTACTGAATGTATAGAGAAACTCTAATTAGATGAA
GAAGAAACGAAGAAGAAAAAACTATTATAAACCATCAGCAAAGAATAATCCCACCCATAT
TTGTGGTGTACTACAAGACAACCTACTAGGAGAGGTACTACTAAATTACCAAATGTTTCA
TCATCTCAACCTTTTTTTCATTTTAGTGTAAAACAAACAAACAAAAGCGTATGTGATTGT
ACAAGAGCTACACAGCGATGAGATGAGCGAACGGCGGGTGAAGGACTCTATTTAAGCAGC
AAAAAGAAACGCATGAGAAGTGAAACGCAAACCCCTCTCTACACAGTTGCATTCGAGACA
ATTGGTGTGAAAAGAGAAGACCAGTCAGTGTACTTGTTGCACTTTGGTTTGGTGAGAGCT
ATCCTTCTCGAATCTCAATATTAGTGTACCGAAAAATGCATCCCCACACGTGGGCGCGTG
GTAAACGTGTCTTTTTGAAGCTATTATGA

consensusID : consensus_3182#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 551
fasta sequence

                              [ACAGAAACAGCGTACTGAATGTATAGAGAAACTCTAATTTGATGAAGAAGAAACGAAGAAGAAAAAACTATTATAAACCATCAGCAAAGAATAATCCCACCCATATTTGTGGTGTACTACAAGACAACCTACTAGGAGAGGTACTACTAAATTACCAAATGTTTCATCATCTCAACCTTTTTTTCATTTTAGTGTAAAACAAACAAACAAAAGCGTATGTGATTGTACAAGAGCTACACAGCGATGAGACGAAACGAAGGGCTGCGAGGAAAAATGAGGAACCTGTGGAATATTAGGAAAATATGCTAAACAATTGACGCATATTCTATACATAGATCGATTGAAGTATATAATTATTATTATTATTTTTATTTTTATTATTATTATATTAATATTATTAATTTTATTGTAGATACATTATTAATGTGTCGGTTTGTTTGTTAGCCCGTAAGTGAAGGACCGTGGAAAAGATAACTTAAAAACAAACACTGAGTGAACTGTTACAAAACAATACTTCACTGCTCCTGATTATGAGATAAAGGATAAGAAAT]

[+] EMBL BX613853             [ACAGAAACAGCGTACTGAATGTATAGAGAAACTCTAATTTGATGAAGAAGAAACGAAGAAGAAAAAACTATTATAAACCATCAGCAAAGAATAATCCCACCCATATTTGTGGTGTACTACAAGACAACCTACTAGGAGAGGTACTACTAAATTACCAAATGTTTCATCATCTCAACCTTTTTTTCATTTTAGTGTAAAACAAACAAACAAAAGCGTATGTGATTGTACAAGAGCTACACAGCGATGAGACGAAACGAAGGGCTGCGAGGAAAAATGAGGAACCTGTGGAATATTAGGAAAATATGCTAAACAATTGACGCATATTCTATACATAGATCGATTGAAGTATATAATTATTATTATTATTTTTATTTTTATTATTATTATATTAATATTATTAATTTTATTGTAGATACATTATTAATGTGTCGGTTTGTTTGTTAGCCCGTAAGTGAAGGACCGTGGAAAAGATAACTTAAAAACAAACACTGAGTGAACTGTTACAAAACAATACTTCACTGCTCCTGATTATGAGATAAAGGATAAGAAAT]




>consensus_3182#1
ACAGAAACAGCGTACTGAATGTATAGAGAAACTCTAATTTGATGAAGAAGAAACGAAGAA
GAAAAAACTATTATAAACCATCAGCAAAGAATAATCCCACCCATATTTGTGGTGTACTAC
AAGACAACCTACTAGGAGAGGTACTACTAAATTACCAAATGTTTCATCATCTCAACCTTT
TTTTCATTTTAGTGTAAAACAAACAAACAAAAGCGTATGTGATTGTACAAGAGCTACACA
GCGATGAGACGAAACGAAGGGCTGCGAGGAAAAATGAGGAACCTGTGGAATATTAGGAAA
ATATGCTAAACAATTGACGCATATTCTATACATAGATCGATTGAAGTATATAATTATTAT
TATTATTTTTATTTTTATTATTATTATATTAATATTATTAATTTTATTGTAGATACATTA
TTAATGTGTCGGTTTGTTTGTTAGCCCGTAAGTGAAGGACCGTGGAAAAGATAACTTAAA
AACAAACACTGAGTGAACTGTTACAAAACAATACTTCACTGCTCCTGATTATGAGATAAA
GGATAAGAAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3182#0      TTGTGCATGGTGAGGAAAACGAGAACCGACCGATGTTTGTTGTTGTTGATCATTTAAATT 60
consensus_3182#1      ------------------------------------------------------------
                                                                                  

consensus_3182#0      TTACACGTCTATACATGCATATATGACTAAATGACTTCTTAAATGTTGACATTAGGCGGA 120
consensus_3182#1      ------------------------------------------------------------
                                                                                  

consensus_3182#0      ATGTGGCGGGTTGTTTAGCGCGACTGTAGAGCGTTGAAGAAAGCAGCGCACACAAGGTGG 180
consensus_3182#1      ------------------------------------------------------------
                                                                                  

consensus_3182#0      TTAATGCCAGCACCAAAATAACTTTATATGCACCGTAACACTACAAAACAAAAAACAACC 240
consensus_3182#1      ------------------------------------------------------------
                                                                                  

consensus_3182#0      ACCCCAGGCACCAGGCACAGCGAGTTTTAACTATTAGAAAGCAAATTCGTACTCAAGATG 300
consensus_3182#1      ------------------------------------------------------------
                                                                                  

consensus_3182#0      CAACATTTGCATCGACAGGCGAGTAGACTAAGTAAGATATACCGACGGGAGGGAGAAAGA 360
consensus_3182#1      ------------------------------------------------------------
                                                                                  

consensus_3182#0      AGGGTTCCCGAAATATGTCCACAATTTGAATTTCTTCTCGTCGCGGCGGGTGGGTGAGAG 420
consensus_3182#1      ------------------------------------------------------------
                                                                                  

consensus_3182#0      TGAAAATGAAAATGGATCTCTCGACAGCAGAGAGGAGGAGGATGAGGATGAGGAGAAGGG 480
consensus_3182#1      ------------------------------------------------------------
                                                                                  

consensus_3182#0      GCGAAGCGTTGATGATGTGTAGAGCACCAACAACCCCTGCAACTCCGAAAAGAAGTAAGA 540
consensus_3182#1      ------------------------------------------------------------
                                                                                  

consensus_3182#0      TAGAGCATCAGCAGCAGCCTTTTTACAAACAATGGAAAACAAACACCACACCAACGGAAC 600
consensus_3182#1      ------------------------------------------------------------
                                                                                  

consensus_3182#0      TAGGGAAAACAAACACAGAAACAGCGTACTGAATGTATAGAGAAACTCTAATTAGATGAA 660
consensus_3182#1      --------------ACAGAAACAGCGTACTGAATGTATAGAGAAACTCTAATTTGATGAA 46
                                    *************************************** ******

consensus_3182#0      GAAGAAACGAAGAAGAAAAAACTATTATAAACCATCAGCAAAGAATAATCCCACCCATAT 720
consensus_3182#1      GAAGAAACGAAGAAGAAAAAACTATTATAAACCATCAGCAAAGAATAATCCCACCCATAT 106
                      ************************************************************

consensus_3182#0      TTGTGGTGTACTACAAGACAACCTACTAGGAGAGGTACTACTAAATTACCAAATGTTTCA 780
consensus_3182#1      TTGTGGTGTACTACAAGACAACCTACTAGGAGAGGTACTACTAAATTACCAAATGTTTCA 166
                      ************************************************************

consensus_3182#0      TCATCTCAACCTTTTTTTCATTTTAGTGTAAAACAAACAAACAAAAGCGTATGTGATTGT 840
consensus_3182#1      TCATCTCAACCTTTTTTTCATTTTAGTGTAAAACAAACAAACAAAAGCGTATGTGATTGT 226
                      ************************************************************

consensus_3182#0      ACAAGAGCTACACAGCGATGAGATGAGCGAACGGCGGGTGAAGGACTCTATTTAAGCAGC 900
consensus_3182#1      ACAAGAGCTACACAGCGATGAGACGAAACGAAGGGCTGCGAGGAA----AAATGAGGAAC 282
                      *********************** **    * **   * ** * *    *  * ** * *

consensus_3182#0      AAAAAGAAACGCATGAGAAGTGAAACGCAAACCCCTCTCTACACAGT-TGCATTCGAGAC 959
consensus_3182#1      CTGTGGAA---TATTAGGAA-AATATGCTAAACAATTGACGCATATTCTATACATAGATC 338
                           ***    ** ** *   * * ** ** *  *     ** * * *  *       *

consensus_3182#0      AATTGGTGTGAAAAGAGAAGACCAGTCAGTGTACTTGTTGCACTTTGGT-TTGGTGAGAG 1018
consensus_3182#1      GATTGAAGTATATAATTATTATTATTATTTTTATTTTTATTATTATTATATTAATATTAT 398
                       ****  **  * *   *  *  * *   * ** ** *   * * *  * **  *   * 

consensus_3182#0      CTATCCTTCTCGAATCTCAATATTAGTGTACCGAAAAATGCATC--CCCACACGTGGGCG 1076
consensus_3182#1      TAATTTTATTGTAGATACATTATTAATGTGTCGGTTTGTTTGTTAGCCCGTAAGTGAAGG 458
                        **  *  *  *    ** ***** ***  **     *   *   ***  * ***   *

consensus_3182#0      --CGTGGTAAACGTGTCTTTTTGA-AGCTATTATGA------------------------ 1109
consensus_3182#1      ACCGTGGAAAAGATAACTTAAAAACAAACACTGAGTGAACTGTTACAAAACAATACTTCA 518
                        ***** ***  *  ***    * *   * *  *                         

consensus_3182#0      ---------------------------------
consensus_3182#1      CTGCTCCTGATTATGAGATAAAGGATAAGAAAT 551