These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3182#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1109 fasta sequence [TTGTGCATGGTGAGGAAAACGAGAACCGACCGATGTTTGTTGTTGTTGATCATTTAAATTTTACACGTCTATACATGCATATATGACTAAATGACTTCTTAAATGTTGACATTAGGCGGAATGTGGCGGGTTGTTTAGCGCGACTGTAGAGCGTTGAAGAAAGCAGCGCACACAAGGTGGTTAATGCCAGCACCAAAATAACTTTATATGCACCGTAACACTACAAAACAAAAAACAACCACCCCAGGCACCAGGCACAGCGAGTTTTAACTATTAGAAAGCAAATTCGTACTCAAGATGCAACATTTGCATCGACAGGCGAGTAGACTAAGTAAGATATACCGACGGGAGGGAGAAAGAAGGGTTCCCGAAATATGTCCACAATTTGAATTTCTTCTCGTCGCGGCGGGTGGGTGAGAGTGAAAATGAAAATGGATCTCTCGACAGCAGAGAGGAGGAGGATGAGGATGAGGAGAAGGGGCGAAGCGTTGATGATGTGTAGAGCACCAACAACCCCTGCAACTCCGAAAAGAAGTAAGATAGAGCATCAGCAGCAGCCTTTTTACAAACAATGGAAAACAAACACCACACCAACGGAACTAGGGAAAACAAACACAGAAACAGCGTACTGAATGTATAGAGAAACTCTAATTAGATGAAGAAGAAACGAAGAAGAAAAAACTATTATAAACCATCAGCAAAGAATAATCCCACCCATATTTGTGGTGTACTACAAGACAACCTACTAGGAGAGGTACTACTAAATTACCAAATGTTTCATCATCTCAACCTTTTTTTCATTTTAGTGTAAAACAAACAAACAAAAGCGTATGTGATTGTACAAGAGCTACACAGCGATGAGATGAGCGAACGGCGGGTGAAGGACTCTATTTAAGCAGCAAAAAGAAACGCATGAGAAGTGAAACGCAAACCCCTCTCTACACAGTTGCATTCGAGACAATTGGTGTGAAAAGAGAAGACCAGTCAGTGTACTTGTTGCACTTTGGTTTGGTGAGAGCTATCCTTCTCGAATCTCAATATTAGTGTACCGAAAAATGCATCCCCACACGTGGGCGCGTGGTAAACGTGTCTTTTTGAAGCTATTATGA] [+] EMBL BX620584 [TTGTGCATGGTGAGGAAAACGAGAACCGACCGATGTTTGTTGTTGTTGATCATTTAAATTTTACACGTCTATACATGCATATATGACTAAATGACTTCTTAAATGTTGACATTAGGCGGAATGTGGCGGGTTGTTTAGCGCGACTGTAGAGCGTTGAAGAAAGCAGCGCACACAAGGTGGTTAATGCCAGCACCAAAATAACTTTATATGCACCGTAACACTACAAAACAAAAAACAACCACCCCAGGCACCAGGCACAGCGAGTTTTAACTATTAGAAAGCAAATTCGTACTCAAGATGCAACATTTGCATCGACAGGCGAGTAGACTAAGTAAGATATACCGACGGGAGGGAGAAAGAAGGGTTCCCGAAATATGTCCACAATTTGAATTTCTTCTCGTCGCGGCGGGTGGGTGAGAGTGAAAATGAAAATGGATCTCTCGACAGCAGAGAGGAGGAGGATGAGGATGAGGAGAAGGGGCGAAGCGTTGATGATGTGTAGAGCACCAACAACCCC ] [+] EMBL BM631428 [ TGAGAGTGAAAATGAAAATGGATCTCTCGACAGCAGAGAGGAGGAGGATGAGGATGAGGAGAAGGGGCGAAGCGTTGATGATGTGTAGAGCACCAACAACCCCTGCAACTCCGAAAAGAAGTAAGATAGAGCATCAGCAGCAGCCTTTTTACAAACAATGGAAAACAAACACCACACCAACGGAACTAGGGAAAACAAACACAGAAACAGCGTACTGAATGTATAGAGAAACTCTAATTAGATGAAGAAGAAACGAAGAAGAAAAAACTATTATAAACCATCAGCAAAGAATAATCCCACCCATATTTGTGGTGTACTACAAGACAACCTACTAGGAGAGGTACTACTAAATTACCAAATGTTTCATCATCTCAACCTTTTTTTCATTTTAGTGTAAAACAAACAAACAAAAGCGTATGTGATTGTACAAGAGCTACACAGCGATGAGATGAGCGAACGGCGGGTGAAGGACTCTATTTAAGCAGCAAAAAGAAACGCATGAGAAGTGAAACGCAAACCCCTCTCTACACAGTTGCATTCGAGACAATTGGTGTGAAAAGAGAAGACCAGTCAGTGTACTTGTTGCACTTTGGTTTGGTGAGAGCTATCCTTCTCGAATCTCAATATTAGTGTACCGAAAAATGCATCCCCACACGTGGGCGCGTGGTAAACGTGTCTTTTTGAAGCTATTATGA] consensusID : consensus_3182#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 551 fasta sequence [ACAGAAACAGCGTACTGAATGTATAGAGAAACTCTAATTTGATGAAGAAGAAACGAAGAAGAAAAAACTATTATAAACCATCAGCAAAGAATAATCCCACCCATATTTGTGGTGTACTACAAGACAACCTACTAGGAGAGGTACTACTAAATTACCAAATGTTTCATCATCTCAACCTTTTTTTCATTTTAGTGTAAAACAAACAAACAAAAGCGTATGTGATTGTACAAGAGCTACACAGCGATGAGACGAAACGAAGGGCTGCGAGGAAAAATGAGGAACCTGTGGAATATTAGGAAAATATGCTAAACAATTGACGCATATTCTATACATAGATCGATTGAAGTATATAATTATTATTATTATTTTTATTTTTATTATTATTATATTAATATTATTAATTTTATTGTAGATACATTATTAATGTGTCGGTTTGTTTGTTAGCCCGTAAGTGAAGGACCGTGGAAAAGATAACTTAAAAACAAACACTGAGTGAACTGTTACAAAACAATACTTCACTGCTCCTGATTATGAGATAAAGGATAAGAAAT] [+] EMBL BX613853 [ACAGAAACAGCGTACTGAATGTATAGAGAAACTCTAATTTGATGAAGAAGAAACGAAGAAGAAAAAACTATTATAAACCATCAGCAAAGAATAATCCCACCCATATTTGTGGTGTACTACAAGACAACCTACTAGGAGAGGTACTACTAAATTACCAAATGTTTCATCATCTCAACCTTTTTTTCATTTTAGTGTAAAACAAACAAACAAAAGCGTATGTGATTGTACAAGAGCTACACAGCGATGAGACGAAACGAAGGGCTGCGAGGAAAAATGAGGAACCTGTGGAATATTAGGAAAATATGCTAAACAATTGACGCATATTCTATACATAGATCGATTGAAGTATATAATTATTATTATTATTTTTATTTTTATTATTATTATATTAATATTATTAATTTTATTGTAGATACATTATTAATGTGTCGGTTTGTTTGTTAGCCCGTAAGTGAAGGACCGTGGAAAAGATAACTTAAAAACAAACACTGAGTGAACTGTTACAAAACAATACTTCACTGCTCCTGATTATGAGATAAAGGATAAGAAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3182#0 TTGTGCATGGTGAGGAAAACGAGAACCGACCGATGTTTGTTGTTGTTGATCATTTAAATT 60 consensus_3182#1 ------------------------------------------------------------ consensus_3182#0 TTACACGTCTATACATGCATATATGACTAAATGACTTCTTAAATGTTGACATTAGGCGGA 120 consensus_3182#1 ------------------------------------------------------------ consensus_3182#0 ATGTGGCGGGTTGTTTAGCGCGACTGTAGAGCGTTGAAGAAAGCAGCGCACACAAGGTGG 180 consensus_3182#1 ------------------------------------------------------------ consensus_3182#0 TTAATGCCAGCACCAAAATAACTTTATATGCACCGTAACACTACAAAACAAAAAACAACC 240 consensus_3182#1 ------------------------------------------------------------ consensus_3182#0 ACCCCAGGCACCAGGCACAGCGAGTTTTAACTATTAGAAAGCAAATTCGTACTCAAGATG 300 consensus_3182#1 ------------------------------------------------------------ consensus_3182#0 CAACATTTGCATCGACAGGCGAGTAGACTAAGTAAGATATACCGACGGGAGGGAGAAAGA 360 consensus_3182#1 ------------------------------------------------------------ consensus_3182#0 AGGGTTCCCGAAATATGTCCACAATTTGAATTTCTTCTCGTCGCGGCGGGTGGGTGAGAG 420 consensus_3182#1 ------------------------------------------------------------ consensus_3182#0 TGAAAATGAAAATGGATCTCTCGACAGCAGAGAGGAGGAGGATGAGGATGAGGAGAAGGG 480 consensus_3182#1 ------------------------------------------------------------ consensus_3182#0 GCGAAGCGTTGATGATGTGTAGAGCACCAACAACCCCTGCAACTCCGAAAAGAAGTAAGA 540 consensus_3182#1 ------------------------------------------------------------ consensus_3182#0 TAGAGCATCAGCAGCAGCCTTTTTACAAACAATGGAAAACAAACACCACACCAACGGAAC 600 consensus_3182#1 ------------------------------------------------------------ consensus_3182#0 TAGGGAAAACAAACACAGAAACAGCGTACTGAATGTATAGAGAAACTCTAATTAGATGAA 660 consensus_3182#1 --------------ACAGAAACAGCGTACTGAATGTATAGAGAAACTCTAATTTGATGAA 46 *************************************** ****** consensus_3182#0 GAAGAAACGAAGAAGAAAAAACTATTATAAACCATCAGCAAAGAATAATCCCACCCATAT 720 consensus_3182#1 GAAGAAACGAAGAAGAAAAAACTATTATAAACCATCAGCAAAGAATAATCCCACCCATAT 106 ************************************************************ consensus_3182#0 TTGTGGTGTACTACAAGACAACCTACTAGGAGAGGTACTACTAAATTACCAAATGTTTCA 780 consensus_3182#1 TTGTGGTGTACTACAAGACAACCTACTAGGAGAGGTACTACTAAATTACCAAATGTTTCA 166 ************************************************************ consensus_3182#0 TCATCTCAACCTTTTTTTCATTTTAGTGTAAAACAAACAAACAAAAGCGTATGTGATTGT 840 consensus_3182#1 TCATCTCAACCTTTTTTTCATTTTAGTGTAAAACAAACAAACAAAAGCGTATGTGATTGT 226 ************************************************************ consensus_3182#0 ACAAGAGCTACACAGCGATGAGATGAGCGAACGGCGGGTGAAGGACTCTATTTAAGCAGC 900 consensus_3182#1 ACAAGAGCTACACAGCGATGAGACGAAACGAAGGGCTGCGAGGAA----AAATGAGGAAC 282 *********************** ** * ** * ** * * * * ** * * consensus_3182#0 AAAAAGAAACGCATGAGAAGTGAAACGCAAACCCCTCTCTACACAGT-TGCATTCGAGAC 959 consensus_3182#1 CTGTGGAA---TATTAGGAA-AATATGCTAAACAATTGACGCATATTCTATACATAGATC 338 *** ** ** * * * ** ** * * ** * * * * * consensus_3182#0 AATTGGTGTGAAAAGAGAAGACCAGTCAGTGTACTTGTTGCACTTTGGT-TTGGTGAGAG 1018 consensus_3182#1 GATTGAAGTATATAATTATTATTATTATTTTTATTTTTATTATTATTATATTAATATTAT 398 **** ** * * * * * * * ** ** * * * * * ** * * consensus_3182#0 CTATCCTTCTCGAATCTCAATATTAGTGTACCGAAAAATGCATC--CCCACACGTGGGCG 1076 consensus_3182#1 TAATTTTATTGTAGATACATTATTAATGTGTCGGTTTGTTTGTTAGCCCGTAAGTGAAGG 458 ** * * * ** ***** *** ** * * *** * *** * consensus_3182#0 --CGTGGTAAACGTGTCTTTTTGA-AGCTATTATGA------------------------ 1109 consensus_3182#1 ACCGTGGAAAAGATAACTTAAAAACAAACACTGAGTGAACTGTTACAAAACAATACTTCA 518 ***** *** * *** * * * * * consensus_3182#0 --------------------------------- consensus_3182#1 CTGCTCCTGATTATGAGATAAAGGATAAGAAAT 551 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||