cluster # 3183

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Anopheles gambiae
cluster # 3183 cluster # 3183 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3183#0 length = 791 sequences # 2

consensus_3183#1 length = 580 sequences # 1

consensusID : consensus_3183#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 791
fasta sequence

                              [CCGCCGCAAGTACGCGCTAGCAGGCGAGTTCGTGCAACTTCGAGCCAACCCGACCCGGACAGTGGCAATCCAGTGGCAATGCAGTACCGCTCACCGACGTCCATCTTAATTTTCTTCTGTTTGGTATTCCACATAGCTCTATGTGCACCGAACGATGGAAAGTATAACCCGAGAAAGTACAACAAAAATGGAAAATACGTGCACAGAGGTGA-----AGGAGACTACGTGGAGGATCTGAGCCGGTACCGGTACGTGCACTATGACGATGGCGATCGCGGAAGGTACTTCCACATACACATACCTTATGATGGTGGTTACGGCAACTACGAGGGTGGCCACGAGCCCTACCGATTCCCACCGTACGATCCAGCCGGAGAGTATGCCGAACAAGTGAATAAGTATTCGTACGATCCTTTCCGAGCGGATTCGTACGATATCAAGAAACCATCCATCTATCTTGAGTACGGTATACCTTCGGTGTCCGAAACTAACACCGCCTCCAGTGTAGTGGATGTCCGGAAGTCGTTACTGCCCGGACCAGGAACGGCATACCTACCCGTACCAGCATCAGGGGAACTCGACGTTCGTCAATCACTTCTTCCTGGGCCGGGAACAGCGTACCTTCCTGTGGTGTCTTCCAAAGAACAGATTCTTGCGATCGGCTCCTCTGAAAAACGATCAAAAATCCTTCCCCATCCTAATAGCATCGACAGTATAGATCACCTCACNACGGCTGCGAGCTCCGATCGTAACTCCGTGCGTGCTACGACAATACAGCCTCCGATCGAGACGAC]

[+] EMBL BM630734             [CCGCCGCAAGTACGCGCTAGCAGGCGAGTTCGTGCAACTTCGAGCCAACCCGACCCGGACAGTGGCAATCCAGTGGCAATGCAGTACCGCTCACCGACGTCCATCTTAATTTTCTTCTGTTTGGTATTCCACATAGCTCTATGTGCACCGAACGATGGAAAGTATAACCCGAGAAAGTACAACAAAAATGGAAAATACGTGCACAGAGGTGA     AGGAGACTACGTGGAGGATCTGAGCCGGTACCGGTACGTGCACTATGACGATGGCGATCGCGGAAGGTACTTCCACATACACATACCTTATGATGGTGGTTACGGCAACTACGAGGGTGGCCACGAGCCCTACCGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BX622949             [                     AGGCGAGTTCGTGCAACTTCGAGCCAACCCGACCCGGACAGTGGCAATCCAGTGGCAATGCAGTACCGCACACCGACGTCCATCTTAATTTTCTTCTGTTTGGTATGCCACATAGCTCTATGTGCACCGAACGATGGAAAGTATAACCCGAGAAAGTACAACAAAAATGGAAAATACGTGCACAGAGGTGAAGGACAGGAGACTACGTGGAGGATCTGAGCCGGTACCGGTACGTGCACTATGACGATGGCGATCGCGGAAGGTACTACCACATACACATACCGTATGATGGTGGTTACGGCAACTACGAAGGTGGCCACGAGCCCTACCGATTCCCACCGTACGATCCAGCCGGAGAGTATGCCGAACAAGTGAATAAGTATTCGTACGATCCTTTCCGAGCGGATTCGTACGATATCAAGAAACCATCCATCTATCTTGAGTACGGTATACCTTCGGTGTCCGAAACTAACACCGCCTCCAGTGTAGTGGATGTCCGGAAGTCGTTACTGCCCGGACCAGGAACGGCATACCTACCCGTACCAGCATCAGGGGAACTCGACGTTCGTCAATCACTTCTTCCTGGGCCGGGAACAGCGTACCTTCCTGTGGTGTCTTCCAAAGAACAGATTCTTGCGATCGGCTCCTCTGAAAAACGATCAAAAATCCTTCCCCATCCTAATAGCATCGACAGTATAGATCACCTCACNACGGCTGCGAGCTCCGATCGTAACTCCGTGCGTGCTACGACAATACAGCCTCCGATCGAGACGAC]




>consensus_3183#0
CCGCCGCAAGTACGCGCTAGCAGGCGAGTTCGTGCAACTTCGAGCCAACCCGACCCGGAC
AGTGGCAATCCAGTGGCAATGCAGTACCGCTCACCGACGTCCATCTTAATTTTCTTCTGT
TTGGTATTCCACATAGCTCTATGTGCACCGAACGATGGAAAGTATAACCCGAGAAAGTAC
AACAAAAATGGAAAATACGTGCACAGAGGTGAAGGAGACTACGTGGAGGATCTGAGCCGG
TACCGGTACGTGCACTATGACGATGGCGATCGCGGAAGGTACTTCCACATACACATACCT
TATGATGGTGGTTACGGCAACTACGAGGGTGGCCACGAGCCCTACCGATTCCCACCGTAC
GATCCAGCCGGAGAGTATGCCGAACAAGTGAATAAGTATTCGTACGATCCTTTCCGAGCG
GATTCGTACGATATCAAGAAACCATCCATCTATCTTGAGTACGGTATACCTTCGGTGTCC
GAAACTAACACCGCCTCCAGTGTAGTGGATGTCCGGAAGTCGTTACTGCCCGGACCAGGA
ACGGCATACCTACCCGTACCAGCATCAGGGGAACTCGACGTTCGTCAATCACTTCTTCCT
GGGCCGGGAACAGCGTACCTTCCTGTGGTGTCTTCCAAAGAACAGATTCTTGCGATCGGC
TCCTCTGAAAAACGATCAAAAATCCTTCCCCATCCTAATAGCATCGACAGTATAGATCAC
CTCACNACGGCTGCGAGCTCCGATCGTAACTCCGTGCGTGCTACGACAATACAGCCTCCG
ATCGAGACGAC

consensusID : consensus_3183#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 580
fasta sequence

                              [GGCAGAATCGGCACGTGGAAGAAACATCCATCTATCTTGACGTACGGTATACCTTCGGTGTCCGAAACTAACACCGCCTCCAGTGTAGTGGATGTCCGGAAGTCGTTACTGCCCGGACCAGGAACGGCATACCTACCCGTACCAGCATCAGGGGAACTCGACGTTCGTCAATCACTTCTTCCTGGGCCGGGAACAGCGTACCTTCCTGTGGTGTCTTCCAAAGAACAGATTCTTGCGATCGGCTCCTCTGAAAAACGATCAAAAATCCTTCCCCATCCTAATAGCATCGACAGTATAGATCACCTCACAACGGCTGCGAGCTCCGATCGTAACTCCGTGCGTGCTACGACAATACAGCCTCCGATCGAGACGACAACAGTGCCTAATATACTAACCGATCGGTCCGATCCGATCGATGACAGTTCGCTGCACGGCCGTCCCTGCTTTGCCACCAGCGCCCCACTAAAGCTCTCCAAAAGCGTGACGAGTGAATGAACAGCTTCGCCAAGCTTTTACGGATTCACCGGGTTGCTGTGATGATCCACTTAGGTTAGTTGATAAGCGGTTCGTGCTACTGTAT]

[+] EMBL BX468133             [GGCAGAATCGGCACGTGGAAGAAACATCCATCTATCTTGACGTACGGTATACCTTCGGTGTCCGAAACTAACACCGCCTCCAGTGTAGTGGATGTCCGGAAGTCGTTACTGCCCGGACCAGGAACGGCATACCTACCCGTACCAGCATCAGGGGAACTCGACGTTCGTCAATCACTTCTTCCTGGGCCGGGAACAGCGTACCTTCCTGTGGTGTCTTCCAAAGAACAGATTCTTGCGATCGGCTCCTCTGAAAAACGATCAAAAATCCTTCCCCATCCTAATAGCATCGACAGTATAGATCACCTCACAACGGCTGCGAGCTCCGATCGTAACTCCGTGCGTGCTACGACAATACAGCCTCCGATCGAGACGACAACAGTGCCTAATATACTAACCGATCGGTCCGATCCGATCGATGACAGTTCGCTGCACGGCCGTCCCTGCTTTGCCACCAGCGCCCCACTAAAGCTCTCCAAAAGCGTGACGAGTGAATGAACAGCTTCGCCAAGCTTTTACGGATTCACCGGGTTGCTGTGATGATCCACTTAGGTTAGTTGATAAGCGGTTCGTGCTACTGTAT]




>consensus_3183#1
GGCAGAATCGGCACGTGGAAGAAACATCCATCTATCTTGACGTACGGTATACCTTCGGTG
TCCGAAACTAACACCGCCTCCAGTGTAGTGGATGTCCGGAAGTCGTTACTGCCCGGACCA
GGAACGGCATACCTACCCGTACCAGCATCAGGGGAACTCGACGTTCGTCAATCACTTCTT
CCTGGGCCGGGAACAGCGTACCTTCCTGTGGTGTCTTCCAAAGAACAGATTCTTGCGATC
GGCTCCTCTGAAAAACGATCAAAAATCCTTCCCCATCCTAATAGCATCGACAGTATAGAT
CACCTCACAACGGCTGCGAGCTCCGATCGTAACTCCGTGCGTGCTACGACAATACAGCCT
CCGATCGAGACGACAACAGTGCCTAATATACTAACCGATCGGTCCGATCCGATCGATGAC
AGTTCGCTGCACGGCCGTCCCTGCTTTGCCACCAGCGCCCCACTAAAGCTCTCCAAAAGC
GTGACGAGTGAATGAACAGCTTCGCCAAGCTTTTACGGATTCACCGGGTTGCTGTGATGA
TCCACTTAGGTTAGTTGATAAGCGGTTCGTGCTACTGTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3183#0      CCGCCGCAAGTACGCGCTAGCAGGCGAGTTCGTGCAACTTCGAGCCAACCCGACCCGGAC 60
consensus_3183#1      ------------------------------------------------------------
                                                                                  

consensus_3183#0      AGTGGCAATCCAGTGGCAATGCAGTACCGCTCACCGACGTCCATCTTAATTTTCTTCTGT 120
consensus_3183#1      ------------------------------------------------------------
                                                                                  

consensus_3183#0      TTGGTATTCCACATAGCTCTATGTGCACCGAACGATGGAAAGTATAACCCGAGAAAGTAC 180
consensus_3183#1      ------------------------------------------------------------
                                                                                  

consensus_3183#0      AACAAAAATGGAAAATACGTGCACAGAGGTGAAGGAGACTACGTGGAGGATCTGAGCCGG 240
consensus_3183#1      ------------------------------------------------------------
                                                                                  

consensus_3183#0      TACCGGTACGTGCACTATGACGATGGCGATCGCGGAAGGTACTTCCACATACACATACCT 300
consensus_3183#1      ------------------------------------------------------------
                                                                                  

consensus_3183#0      TATGATGGTGGTTACGGCAACTACGAGGGTGGCCACGAGCCCTACCGATTCCCACCGTAC 360
consensus_3183#1      ------------------------------------------------------------
                                                                                  

consensus_3183#0      GATCCAGCCGGAGAGTATGCCGAACAAGTGAATAAGTATTCGTACGATCCTTTCCGAGCG 420
consensus_3183#1      --------------------------------------------------------GGCA 4
                                                                               ** 

consensus_3183#0      GATTCGTACGATATCAAGAAACCATCCATCTATCTTGA-GTACGGTATACCTTCGGTGTC 479
consensus_3183#1      GAATCGGC--ACGTGGAAGAAACATCCATCTATCTTGACGTACGGTATACCTTCGGTGTC 62
                      ** ***    *  *  *  ** **************** *********************

consensus_3183#0      CGAAACTAACACCGCCTCCAGTGTAGTGGATGTCCGGAAGTCGTTACTGCCCGGACCAGG 539
consensus_3183#1      CGAAACTAACACCGCCTCCAGTGTAGTGGATGTCCGGAAGTCGTTACTGCCCGGACCAGG 122
                      ************************************************************

consensus_3183#0      AACGGCATACCTACCCGTACCAGCATCAGGGGAACTCGACGTTCGTCAATCACTTCTTCC 599
consensus_3183#1      AACGGCATACCTACCCGTACCAGCATCAGGGGAACTCGACGTTCGTCAATCACTTCTTCC 182
                      ************************************************************

consensus_3183#0      TGGGCCGGGAACAGCGTACCTTCCTGTGGTGTCTTCCAAAGAACAGATTCTTGCGATCGG 659
consensus_3183#1      TGGGCCGGGAACAGCGTACCTTCCTGTGGTGTCTTCCAAAGAACAGATTCTTGCGATCGG 242
                      ************************************************************

consensus_3183#0      CTCCTCTGAAAAACGATCAAAAATCCTTCCCCATCCTAATAGCATCGACAGTATAGATCA 719
consensus_3183#1      CTCCTCTGAAAAACGATCAAAAATCCTTCCCCATCCTAATAGCATCGACAGTATAGATCA 302
                      ************************************************************

consensus_3183#0      CCTCACNACGGCTGCGAGCTCCGATCGTAACTCCGTGCGTGCTACGACAATACAGCCTCC 779
consensus_3183#1      CCTCACAACGGCTGCGAGCTCCGATCGTAACTCCGTGCGTGCTACGACAATACAGCCTCC 362
                      ****** *****************************************************

consensus_3183#0      GATCGAGACGAC------------------------------------------------ 791
consensus_3183#1      GATCGAGACGACAACAGTGCCTAATATACTAACCGATCGGTCCGATCCGATCGATGACAG 422
                      ************                                                

consensus_3183#0      ------------------------------------------------------------
consensus_3183#1      TTCGCTGCACGGCCGTCCCTGCTTTGCCACCAGCGCCCCACTAAAGCTCTCCAAAAGCGT 482
                                                                                  

consensus_3183#0      ------------------------------------------------------------
consensus_3183#1      GACGAGTGAATGAACAGCTTCGCCAAGCTTTTACGGATTCACCGGGTTGCTGTGATGATC 542
                                                                                  

consensus_3183#0      --------------------------------------
consensus_3183#1      CACTTAGGTTAGTTGATAAGCGGTTCGTGCTACTGTAT 580