cluster # 3187

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3187 cluster # 3187 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3187#0 length = 697 sequences # 2

consensus_3187#1 length = 359 sequences # 1

consensusID : consensus_3187#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 697
fasta sequence

                              [CCGCACGCTCTCGCGCATCTCGCCGTGCAGTCAGTCAGTCAGTCAGTCCATCAACTTTTCCGCGGAAAAGCGGAAATTTTCTCCTGCGACAGCAGCAGCAGCGACCCAAGTGCAGTGAAAATCATCCCAATCACTATTTTATCCATTCCTACGGCGTGTTAATAACCCCCTCTATTATACATGAAACTCATAACTAGTAACAGTGTTTAGAAAGAGAGAGAGACCCTTGCGCCATTGTGAATACCATCGTGTGTGTG--TGTTTCTTCGCTTCTTAGAATCCCGTTTTTTGGTGCACGCAACACGCGCCTAACATCGTTTCGAATACCTTAGCATTTGTGTGTG------TGTGTGTCTGTTAAACGTGTATGTGGTCCGTTTGTACATAAAAGTGGGCAGTAAAAAAAGCAAAAAAAAAAATGGGTGGCAAGTCCTCCCCACGCACGCCAGGTGTTGGTGTCTGTGCCGCGCCAATGAAGCCAATATTCTGCTAGTGCGCGATCGTGTTGAAAAGCAAAGGGTGGTTCAAATATAGAAATAAGCAAGCGCAAACGTACGTTTGAAAAAGGGCCAGCACAGGAAGAACCCGCTGTGCAACACACACTACTTCCTCCACAAGAGTTCGAGGAGTAGGAGGAGGCCGTTGCGCAACCCGCGTTGATATCCCGTGTGTGTGTGAGCGCGCCCGCTTCATCTCCCGCTA]

[+] EMBL BM580672             [CCGCACGCTCTCGCGCATCTCGCCGTGCAGTCAGTCAGTCAGTCAGTCCATCAACTTTTCCGCGGAAAAGCGGAAATTTTCTCCTGCGACAGCAGCAGCAGCGACCCAAGTGCAGTGAAAATCATCCCAATCACTATTTTATCCATTCCTACGGCGTGTTAATAACCCCCTCTATTATACATGAAACTCATAACTAGTAACAGTGTTTAGAAAGAGAGAGAGACCCTTGCGCCATTGTGAATACCATCGTGTGTGTG  TGTTTCTTCGCTTCTTAGAATCCCGTTTTTTGGTGCACGCAACACGCGCCTAACATCGTTTCGAATACCTTAGCATTTGTGTGTG      TGTGTGTCTGTTAAACGTGTATGTGGTCCGTTTGTACATAAAAGTGGGCAGTAAAAAAAGCAAAAAAAAAAATGGGTGGCAAGTCCTCCCCACGCACGCCAGGTGTTGGTGTCTGTGCCGCGCCAATGAAGCCAATATTCTGCTAGTGCGCGATCGTGTTGAAAAGCAAAGGGTGGTTCAAATATAGAAATAAGCAAGCGCAAACGTACGTTTGAAAAAGGGCCAGCACAGGAAGAACCCGCTGTGCAACACACACTACTTCCTCCACAAGAGTTCGAGGAGTAGGAGGAGGCCGTTGCGCAACCCGCGTTGATATCCCGTGTGTGTGTGAGCGCGCCCGCTTCATCTCCCGCTA]
[+] EMBL BM605407             [                                      ccgGTCAGTCCAACAACTTTTCCGCGGAAAAGCGGAAATTTTCTCCTGCGA   CAGCAGCAGCGACCCAAGTGCAGTGAAAATCATCCCAATCACTATTTTATCCATTCCTACGGCGTGTTAATAACCCCCTCTATTATACATGAAACTCAAAACTAGTAACAGTGTTTAGAA  AGAGAGAGACCCTTGCACCATTGTGAATACTATTGTGTGTGTGTCTGTTTCTTCGCTTCTTAGAATCCCGTTTATTGGTGAACGCAACACGCGCCTAACATCGTTTCGAATACCATAGCATTTGTGTGTGTGTGTATGTGTGTCTGTTAAACGTGTATGTGGTCCGTTTGTAC                                                                                                                                                                                                                                                                                                                              ]




>consensus_3187#0
CCGCACGCTCTCGCGCATCTCGCCGTGCAGTCAGTCAGTCAGTCAGTCCATCAACTTTTC
CGCGGAAAAGCGGAAATTTTCTCCTGCGACAGCAGCAGCAGCGACCCAAGTGCAGTGAAA
ATCATCCCAATCACTATTTTATCCATTCCTACGGCGTGTTAATAACCCCCTCTATTATAC
ATGAAACTCATAACTAGTAACAGTGTTTAGAAAGAGAGAGAGACCCTTGCGCCATTGTGA
ATACCATCGTGTGTGTGTGTTTCTTCGCTTCTTAGAATCCCGTTTTTTGGTGCACGCAAC
ACGCGCCTAACATCGTTTCGAATACCTTAGCATTTGTGTGTGTGTGTGTCTGTTAAACGT
GTATGTGGTCCGTTTGTACATAAAAGTGGGCAGTAAAAAAAGCAAAAAAAAAAATGGGTG
GCAAGTCCTCCCCACGCACGCCAGGTGTTGGTGTCTGTGCCGCGCCAATGAAGCCAATAT
TCTGCTAGTGCGCGATCGTGTTGAAAAGCAAAGGGTGGTTCAAATATAGAAATAAGCAAG
CGCAAACGTACGTTTGAAAAAGGGCCAGCACAGGAAGAACCCGCTGTGCAACACACACTA
CTTCCTCCACAAGAGTTCGAGGAGTAGGAGGAGGCCGTTGCGCAACCCGCGTTGATATCC
CGTGTGTGTGTGAGCGCGCCCGCTTCATCTCCCGCTA

consensusID : consensus_3187#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 359
fasta sequence

                              [CCGAGCGGCTTCGCTGTGCTGAGTGTGTTGATGGATGCCGTGACCTGTGTGTGTGCGTGTGCGTGTGTGTGCATAAGAAAGGAAAATCATCCCAATCACTATTTTATCCATTCCTACGGCGTGTTAATAACCCCCTCTATTATACATGAAACTCATAACTAGTAACAGTGTTTAGAAAGAGAGAGAGACCCTTGCGCCATTGTGAATACCATCGTGTGTGTGTGTTTCTTCGCTTCTTAGAATCCCGTTTTTTGGTGCACGCAACACGCGCCTAACATCGTTTCGAATACCTTAGCATTTGTGTGTGTGTGTGTCTGTTAAACGTGTATGTGGTCCGTTTGTACATAAAAGTGGGCAGT]

[+] EMBL BM595050             [CCGAGCGGCTTCGCTGTGCTGAGTGTGTTGATGGATGCCGTGACCTGTGTGTGTGCGTGTGCGTGTGTGTGCATAAGAAAGGAAAATCATCCCAATCACTATTTTATCCATTCCTACGGCGTGTTAATAACCCCCTCTATTATACATGAAACTCATAACTAGTAACAGTGTTTAGAAAGAGAGAGAGACCCTTGCGCCATTGTGAATACCATCGTGTGTGTGTGTTTCTTCGCTTCTTAGAATCCCGTTTTTTGGTGCACGCAACACGCGCCTAACATCGTTTCGAATACCTTAGCATTTGTGTGTGTGTGTGTCTGTTAAACGTGTATGTGGTCCGTTTGTACATAAAAGTGGGCAGT]




>consensus_3187#1
CCGAGCGGCTTCGCTGTGCTGAGTGTGTTGATGGATGCCGTGACCTGTGTGTGTGCGTGT
GCGTGTGTGTGCATAAGAAAGGAAAATCATCCCAATCACTATTTTATCCATTCCTACGGC
GTGTTAATAACCCCCTCTATTATACATGAAACTCATAACTAGTAACAGTGTTTAGAAAGA
GAGAGAGACCCTTGCGCCATTGTGAATACCATCGTGTGTGTGTGTTTCTTCGCTTCTTAG
AATCCCGTTTTTTGGTGCACGCAACACGCGCCTAACATCGTTTCGAATACCTTAGCATTT
GTGTGTGTGTGTGTCTGTTAAACGTGTATGTGGTCCGTTTGTACATAAAAGTGGGCAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3187#0      CCGCACGCTCTCGCGCATCTCGCCGTGCAGTCAGTCAGTCAGTCAGTCCATCAACTTTTC 60
consensus_3187#1      ------------------------------CCGAGCGGCT--TCGCTGTGCTGAGTGTGT 28
                                                     *   * *    **  *      * * *  

consensus_3187#0      CGCGGAAAAGCGGAAATTTTCTCCTGCGACAGCAGCAGCAGCGACCCAAGTGCAGTGAAA 120
consensus_3187#1      TGATGGATGCCGTGACCTGTG---TGTGTGCGTGTGCGTGTGTGTGCATAAGAAAGGAAA 85
                       *  * *   **  *  * *    ** *   *     *        **   * *  ****

consensus_3187#0      ATCATCCCAATCACTATTTTATCCATTCCTACGGCGTGTTAATAACCCCCTCTATTATAC 180
consensus_3187#1      ATCATCCCAATCACTATTTTATCCATTCCTACGGCGTGTTAATAACCCCCTCTATTATAC 145
                      ************************************************************

consensus_3187#0      ATGAAACTCATAACTAGTAACAGTGTTTAGAAAGAGAGAGAGACCCTTGCGCCATTGTGA 240
consensus_3187#1      ATGAAACTCATAACTAGTAACAGTGTTTAGAAAGAGAGAGAGACCCTTGCGCCATTGTGA 205
                      ************************************************************

consensus_3187#0      ATACCATCGTGTGTGTGTGTTTCTTCGCTTCTTAGAATCCCGTTTTTTGGTGCACGCAAC 300
consensus_3187#1      ATACCATCGTGTGTGTGTGTTTCTTCGCTTCTTAGAATCCCGTTTTTTGGTGCACGCAAC 265
                      ************************************************************

consensus_3187#0      ACGCGCCTAACATCGTTTCGAATACCTTAGCATTTGTGTGTGTGTGTGTCTGTTAAACGT 360
consensus_3187#1      ACGCGCCTAACATCGTTTCGAATACCTTAGCATTTGTGTGTGTGTGTGTCTGTTAAACGT 325
                      ************************************************************

consensus_3187#0      GTATGTGGTCCGTTTGTACATAAAAGTGGGCAGTAAAAAAAGCAAAAAAAAAAATGGGTG 420
consensus_3187#1      GTATGTGGTCCGTTTGTACATAAAAGTGGGCAGT-------------------------- 359
                      **********************************                          

consensus_3187#0      GCAAGTCCTCCCCACGCACGCCAGGTGTTGGTGTCTGTGCCGCGCCAATGAAGCCAATAT 480
consensus_3187#1      ------------------------------------------------------------
                                                                                  

consensus_3187#0      TCTGCTAGTGCGCGATCGTGTTGAAAAGCAAAGGGTGGTTCAAATATAGAAATAAGCAAG 540
consensus_3187#1      ------------------------------------------------------------
                                                                                  

consensus_3187#0      CGCAAACGTACGTTTGAAAAAGGGCCAGCACAGGAAGAACCCGCTGTGCAACACACACTA 600
consensus_3187#1      ------------------------------------------------------------
                                                                                  

consensus_3187#0      CTTCCTCCACAAGAGTTCGAGGAGTAGGAGGAGGCCGTTGCGCAACCCGCGTTGATATCC 660
consensus_3187#1      ------------------------------------------------------------
                                                                                  

consensus_3187#0      CGTGTGTGTGTGAGCGCGCCCGCTTCATCTCCCGCTA 697
consensus_3187#1      -------------------------------------