These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_319#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 698 fasta sequence [TGGTTTCCATTTCCAATCATGCACAAATGCACATAACACGATCATCATCCTTTTCACGACCAACAACCACCAACAGCAACCGGACGGGACGGACGCTGATAGCAAGCACTTAATAGAAGGAAGAAACAAGAAGAAAGAAAGAAAAACAAACGCAGATATTCATATTTTATACACACACAAAACCGGAAACAAACCCCGATCAACAAACCAACAAAATCCCCCTTTCCCTGGAGATGGTATTGTAGAAGAGGAGAACATAACAACCCCGCAATCAATCGCAATCATAAAACCAAAATACAGTCAAAGTACAGTGGGCGTGTGTGCTAGGAAGTCGGAAAAACACTAAAAGAAAGGAAAAAACCCTAAAAGAAAGGAAAAAAAACCCTAAAAGAAAGCAAAAAACACTAAAAGAAAGGAAAAACCACTAAGAGAAAGGAGAAAACACTAAAAGAAAGGAGAAAACACTAAAAGAAATTAAAACACACTAAAAGAAAGGAACAATAACACTTAACGTCTTTTCAAGAGAGATTGTATGTGTGTCTCTGGAAGAAGGAAAAATCTCTTGAAAGCAGTTGGAACCAGTAAAACAAACGATCGAACGGAGGATGTATCGTTGTGAGCCCGTTTACTGATAATATGATCACTTTAACTGTTGCGGTAACTTAGATATGTGTTGTTTTTTCTATGCCGTTTTCGTA] [+] EMBL BX618439 [TGGTTTCCATTTCCAATCATGCACAAATGCACATAACACGATCATCATCCTTTTCACGACCAACAACCACCAACAGCAACCGGACGGGACGGACGCTGATAGCAAGCACTTAATAGAAGGAAGAAACAAGAAGAAAGAAAGAAAAACAAACGCAGATATTCATATTTTATACACACACAAAACCGGAAACAAACCCCGATCAACAAACCAACAAAATCCCCCTTTCCCTGGAGATGGTATTGTAGAAGAGGAGAACATAACAACCCCGCAATCAATCGCAATCATAAAACCAAAATACAGTCAAAGTACAGTGGGCGTGTGTGCTAGGAAGTCGGAAAAACACTAAAAGAAAGGAAAAAACCCTAAAAGAAAGGAAAAAAAACCCTAAAAGAAAGCAAAAAACACTAAAAGAAAGGAAAAACCACTAAGAGAAAGGAGAAAACACTAAAAGAAAGGAGAAAACACTAAAAGAAATTAAAACACACTAAAAGAAAGGAACAATAACACTTAACGTCTTTTCAAGAGAGATTGTATGTGTGTCTCTGGAAGAAGGAAAAATCTCTTGAAAGCAGTTGGAACCAGTAAAACAAACGATCGAACGGAGGATGTATCGTTGTGAGCCCGTTTACTGATAATATGATCACTTTAACTGTTGCGGTAACTTAGATATGTGTTGTTTTTTCTATGCCGTTTTCGTA] consensusID : consensus_319#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 374 fasta sequence [TAAGAGAAAGGAGAAAACACTAAAAGAAAGGAGAAAACACTAAAAGAAATTAAAACACACTAAAAGAAAGGAACAATAACACTTAACGTCTTTTCAAGAGAGATTGTATGTGTGTCTCTGGAAGAAGGAAAAATCTCTTGAAAGCAGTTGGAACCAGTAAAACAAACGATCGAACGGAGGATGTATCGTTGTGAGCCCGTTTACTGATAATATGATCACTTTAACTGTTGCGGTAACTTAGATATGTGTAATTTGTTTTGTGTGTGTGTGTGCGTCTGTGTGCGTGTGTGAATATTTTGTAAGTGTGCATTGATGATAGTAGCAATCGTCTGGCGCAAAGCATTGGTTTACATCTCCAATCATGCACAAATGCA] [+] EMBL BX612972 [TAAGAGAAAGGAGAAAACACTAAAAGAAAGGAGAAAACACTAAAAGAAATTAAAACACACTAAAAGAAAGGAACAATAACACTTAACGTCTTTTCAAGAGAGATTGTATGTGTGTCTCTGGAAGAAGGAAAAATCTCTTGAAAGCAGTTGGAACCAGTAAAACAAACGATCGAACGGAGGATGTATCGTTGTGAGCCCGTTTACTGATAATATGATCACTTTAACTGTTGCGGTAACTTAGATATGTGTAATTTGTTTTGTGTGTGTGTGTGCGTCTGTGTGCGTGTGTGAATATTTTGTAAGTGTGCATTGATGATAGTAGCAATCGTCTGGCGCAAAGCATTGGTTTACATCTCCAATCATGCACAAATGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_319#0 TGGTTTCCATTTCCAATCATGCACAAATGCACATAACACGATCATCATCCTTTTCACGAC 60 consensus_319#1 ------------------------------------------------------------ consensus_319#0 CAACAACCACCAACAGCAACCGGACGGGACGGACGCTGATAGCAAGCACTTAATAGAAGG 120 consensus_319#1 ------------------------------------------------------------ consensus_319#0 AAGAAACAAGAAGAAAGAAAGAAAAACAAACGCAGATATTCATATTTTATACACACACAA 180 consensus_319#1 ------------------------------------------------------------ consensus_319#0 AACCGGAAACAAACCCCGATCAACAAACCAACAAAATCCCCCTTTCCCTGGAGATGGTAT 240 consensus_319#1 ------------------------------------------------------------ consensus_319#0 TGTAGAAGAGGAGAACATAACAACCCCGCAATCAATCGCAATCATAAAACCAAAATACAG 300 consensus_319#1 ------------------------------------------------------------ consensus_319#0 TCAAAGTACAGTGGGCGTGTGTGCTAGGAAGTCGGAAAAACACTAAAAGAAAGGAAAAAA 360 consensus_319#1 ------------------------------------------------------------ consensus_319#0 CCCTAAAAGAAAGGAAAAAAAACCCTAAAAGAAAGCAAAAAACACTAAAAGAAAGGAAAA 420 consensus_319#1 ------------------------------------------------------------ consensus_319#0 ACCACTAAGAGAAAGGAGAAAACACTAAAAGAAAGGAGAAAACACTAAAAGAAATTAAAA 480 consensus_319#1 -----TAAGAGAAAGGAGAAAACACTAAAAGAAAGGAGAAAACACTAAAAGAAATTAAAA 55 ******************************************************* consensus_319#0 CACACTAAAAGAAAGGAACAATAACACTTAACGTCTTTTCAAGAGAGATTGTATGTGTGT 540 consensus_319#1 CACACTAAAAGAAAGGAACAATAACACTTAACGTCTTTTCAAGAGAGATTGTATGTGTGT 115 ************************************************************ consensus_319#0 CTCTGGAAGAAGGAAAAATCTCTTGAAAGCAGTTGGAACCAGTAAAACAAACGATCGAAC 600 consensus_319#1 CTCTGGAAGAAGGAAAAATCTCTTGAAAGCAGTTGGAACCAGTAAAACAAACGATCGAAC 175 ************************************************************ consensus_319#0 GGAGGATGTATCGTTGTGAGCCCGTTTACTGATAATATGATCACTTTAACTGTTGCGGTA 660 consensus_319#1 GGAGGATGTATCGTTGTGAGCCCGTTTACTGATAATATGATCACTTTAACTGTTGCGGTA 235 ************************************************************ consensus_319#0 ACTTAGATATGTGTTGTTTTTTCTATGCCGTTTTCGTA---------------------- 698 consensus_319#1 ACTTAGATATGTGTAATTTGTTTTGTGT-GTGTGTGTGCGTCTGTGTGCGTGTGTGAATA 294 ************** *** ** * ** ** * ** consensus_319#0 ------------------------------------------------------------ consensus_319#1 TTTTGTAAGTGTGCATTGATGATAGTAGCAATCGTCTGGCGCAAAGCATTGGTTTACATC 354 consensus_319#0 -------------------- consensus_319#1 TCCAATCATGCACAAATGCA 374 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||