cluster # 3190

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3190 cluster # 3190 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3190#0 length = 892 sequences # 2

consensus_3190#1 length = 550 sequences # 1

consensusID : consensus_3190#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 892
fasta sequence

                              [CCGCAAGCGTCAAGCGGATGTCAACGCTGCGTGACGCTAATGTCAAACTAAACAAAACAAGAAAATAAGAGAAAAAAATGAACAAAACACAAGTCAGTAAGTAGCAAGTAAGTTAAGTACAAGAAACTAAGAGAGCAAACGAGGGCGTTAATGTGTTTAAGTGGTTAAGGTGGACAATGTAAGCAATGTAACGCGATTCAATTAACACAAACATGAACAAAGCAAACGTGACAAAGCGCCCCCATTATCAAGTCTTCTAGCCATGTCAGGTGGAGAAAGAGAAGGAGGAGGAGCAGTAGCAAAGGCGAATGAAACTAAGAGTCAAATTCAATTCAAGTCAGCCCTCGCCATGTTGATAGTCAAATTAAAATCGAAAGCGCCCTCTCAATCCATCAAAAGCCAATCAGTTTGTGCGTCTTAGTGTAGATCTACTAAATCTTTTCTCTTAGTAAGCCTGCGCTGGCGATACATGGTTTTTGATGACAAACTTCTTCATGCAGCGCCCAATATTCGCAGTCAGTACCACAGAGAGAGAGAGCTATCTGTTTGCCATGTTTAAGTTTCCTACTGCAAACTTT-TACCACTTCTATCACTCTACGTCTACTAATACACCTTCTTCCGATTACTACTATCATACACTATCACACTAATAGTGCACTGCAATGCTCGAAACTCTTGTCAGTTCTGAAAACGCAATCTTTTTATCTGTTCAACCCGATCGTATAACTTGTACTAAAACTGTGGACAAAAAAACACACACACACACACACAGAAAGCTAGTTTTTACATTAACGACAAGCAAAATAAACCCTCGTGTTGTGAATAGTAATGCAGTGGCGCAGAGAAAAGGATCGGTAAGAGAGATATTAAAATCGCAGTAAACGTTNTTGTA]

[+] EMBL BM630263             [CCGCAAGCGTCAAGCGGATGTCAACGCTGCGTGACGCTAATGTCAAACTAAACAAAACAAGAAAATAAGAGAAAAAAATGAACAAAACACAAGTCAGTAAGTAGCAAGTAAGTTAAGTACAAGAAACTAAGAGAGCAAACGAGGGCGTTAATGTGTTTAAGTGGTTAAGGTGGACAATGTAAGCAATGTAACGCGATTCAATTAACACAAACATGAACAAAGCAAACGTGACAAAGCGCCCCCATTATCAAGTCTTCTAGCCATGTCAGGTGGAGAAAGAGAAGGAGGAGGAGCAGTAGCAAAGGCGAATGAAACTAAGAGTCAAATTCAATTCAAGTCAGCCCTCGCCATGTTGATAGTCAAATTAAAATCGAAAGCGCCCTCTCAATCCATCAAAAGCCAATCAGTTTGTGCGTCTTAGTGTAGATCTACTAAATCTTTTCTCTTAGTAAGCCTGCGCTGGCGATACATGGTTTTTGATGACAAACTTCTTCATGCAGCGCCCAATATTCGCAGTCAGTACCACAGAGAGAGAGAGCTATCTGTTTGCCATGTTTAAGTTTCCTACTGCAAACTTT TACCACTTCTATCACTCTACGTCTACTAATACACCTTCTTCCGATTACTACTATCATACACTATCACACTAATAGTGCACTGCAATGCTCGAAACTCTTGTCAGTTCTGAAAACGCAATCTTTTTATCTGTT                                                                                                                                                                                      ]
[+] EMBL BX619166             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TTGCCATGTTTAAGTTTCCTAC GCAAACTTTNTACCACTTCTATCACTCTACGTCTACTAATACACCTTCTTCCGATTACTACTATCATACACTATCACACTAATAGTGCACTGCAATGCTCGAAACTCTTGTCAGTTCTGAAAACGCAATCTTTTTATCTGTTCAACCCGATCGTATAACTTGTACTAAAACTGTGGACAAAAAAACACACACACACACACACAGAAAGCTAGTTTTTACATTAACGACAAGCAAAATAAACCCTCGTGTTGTGAATAGTAATGCAGTGGCGCAGAGAAAAGGATCGGTAAGAGAGATATTAAAATCGCAGTAAACGTTNTTGTA]




>consensus_3190#0
CCGCAAGCGTCAAGCGGATGTCAACGCTGCGTGACGCTAATGTCAAACTAAACAAAACAA
GAAAATAAGAGAAAAAAATGAACAAAACACAAGTCAGTAAGTAGCAAGTAAGTTAAGTAC
AAGAAACTAAGAGAGCAAACGAGGGCGTTAATGTGTTTAAGTGGTTAAGGTGGACAATGT
AAGCAATGTAACGCGATTCAATTAACACAAACATGAACAAAGCAAACGTGACAAAGCGCC
CCCATTATCAAGTCTTCTAGCCATGTCAGGTGGAGAAAGAGAAGGAGGAGGAGCAGTAGC
AAAGGCGAATGAAACTAAGAGTCAAATTCAATTCAAGTCAGCCCTCGCCATGTTGATAGT
CAAATTAAAATCGAAAGCGCCCTCTCAATCCATCAAAAGCCAATCAGTTTGTGCGTCTTA
GTGTAGATCTACTAAATCTTTTCTCTTAGTAAGCCTGCGCTGGCGATACATGGTTTTTGA
TGACAAACTTCTTCATGCAGCGCCCAATATTCGCAGTCAGTACCACAGAGAGAGAGAGCT
ATCTGTTTGCCATGTTTAAGTTTCCTACTGCAAACTTTTACCACTTCTATCACTCTACGT
CTACTAATACACCTTCTTCCGATTACTACTATCATACACTATCACACTAATAGTGCACTG
CAATGCTCGAAACTCTTGTCAGTTCTGAAAACGCAATCTTTTTATCTGTTCAACCCGATC
GTATAACTTGTACTAAAACTGTGGACAAAAAAACACACACACACACACACAGAAAGCTAG
TTTTTACATTAACGACAAGCAAAATAAACCCTCGTGTTGTGAATAGTAATGCAGTGGCGC
AGAGAAAAGGATCGGTAAGAGAGATATTAAAATCGCAGTAAACGTTNTTGTA

consensusID : consensus_3190#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 550
fasta sequence

                              [ATAGTAATGCAGTGGCGCAGAGAAAAGGGATCGGTAGAGAGATATTAAATCGCAGTAACGTTTTGTACTGCAATGCGATCACCAACTCAGCCACACTCAGCCCGTGTAATGTATGTGTTTATGTATTTGTTTTAGCTATTTAAAAAAATACATTTAATCGAAGCGTACATCGCAGGCATAAGGATTCACTGGGTTTAAACAATCGCGACAAAACCAAGCAAAACATTCTGGGGAAAGAAAAACGTCTTACCGTACTTGTACTAAAAACCAACATCATTCATACTGTCTATCTCCCACCAAATCGTAATCCCTTTCCCTTTACATAGTTAATAGAACAACTTCCGAAACAAAACAAAAAACATATATTATTAGACTAATGGAAGCAGAGAGGAGGTGAATTGTTTCTTTTTTTTTTTTTTGTTGTCCGTTCAATTATTTACAATCACAAGTACATTGTGAACGATGGTCAGCCAGACCGATGGATTGCAAAATACATACTAAAAACAAAAGAGTGAATGCGTTTTCAATGCAATTAAAATGCCATCATCAG]

[+] EMBL BX613422             [ATAGTAATGCAGTGGCGCAGAGAAAAGGGATCGGTAGAGAGATATTAAATCGCAGTAACGTTTTGTACTGCAATGCGATCACCAACTCAGCCACACTCAGCCCGTGTAATGTATGTGTTTATGTATTTGTTTTAGCTATTTAAAAAAATACATTTAATCGAAGCGTACATCGCAGGCATAAGGATTCACTGGGTTTAAACAATCGCGACAAAACCAAGCAAAACATTCTGGGGAAAGAAAAACGTCTTACCGTACTTGTACTAAAAACCAACATCATTCATACTGTCTATCTCCCACCAAATCGTAATCCCTTTCCCTTTACATAGTTAATAGAACAACTTCCGAAACAAAACAAAAAACATATATTATTAGACTAATGGAAGCAGAGAGGAGGTGAATTGTTTCTTTTTTTTTTTTTTGTTGTCCGTTCAATTATTTACAATCACAAGTACATTGTGAACGATGGTCAGCCAGACCGATGGATTGCAAAATACATACTAAAAACAAAAGAGTGAATGCGTTTTCAATGCAATTAAAATGCCATCATCAG]




>consensus_3190#1
ATAGTAATGCAGTGGCGCAGAGAAAAGGGATCGGTAGAGAGATATTAAATCGCAGTAACG
TTTTGTACTGCAATGCGATCACCAACTCAGCCACACTCAGCCCGTGTAATGTATGTGTTT
ATGTATTTGTTTTAGCTATTTAAAAAAATACATTTAATCGAAGCGTACATCGCAGGCATA
AGGATTCACTGGGTTTAAACAATCGCGACAAAACCAAGCAAAACATTCTGGGGAAAGAAA
AACGTCTTACCGTACTTGTACTAAAAACCAACATCATTCATACTGTCTATCTCCCACCAA
ATCGTAATCCCTTTCCCTTTACATAGTTAATAGAACAACTTCCGAAACAAAACAAAAAAC
ATATATTATTAGACTAATGGAAGCAGAGAGGAGGTGAATTGTTTCTTTTTTTTTTTTTTG
TTGTCCGTTCAATTATTTACAATCACAAGTACATTGTGAACGATGGTCAGCCAGACCGAT
GGATTGCAAAATACATACTAAAAACAAAAGAGTGAATGCGTTTTCAATGCAATTAAAATG
CCATCATCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3190#0      CCGCAAGCGTCAAGCGGATGTCAACGCTGCGTGACGCTAATGTCAAACTAAACAAAACAA 60
consensus_3190#1      ------------------------------------------------------------
                                                                                  

consensus_3190#0      GAAAATAAGAGAAAAAAATGAACAAAACACAAGTCAGTAAGTAGCAAGTAAGTTAAGTAC 120
consensus_3190#1      ------------------------------------------------------------
                                                                                  

consensus_3190#0      AAGAAACTAAGAGAGCAAACGAGGGCGTTAATGTGTTTAAGTGGTTAAGGTGGACAATGT 180
consensus_3190#1      ------------------------------------------------------------
                                                                                  

consensus_3190#0      AAGCAATGTAACGCGATTCAATTAACACAAACATGAACAAAGCAAACGTGACAAAGCGCC 240
consensus_3190#1      ------------------------------------------------------------
                                                                                  

consensus_3190#0      CCCATTATCAAGTCTTCTAGCCATGTCAGGTGGAGAAAGAGAAGGAGGAGGAGCAGTAGC 300
consensus_3190#1      --------------------------------------------ATAGTAATGCAGTGGC 16
                                                                     *    ***** **

consensus_3190#0      AAAGGCGAATGAAACTAAGAGTCAAAT-TCAATTCAAGTCAGCCCTCGCCATGTTGATAG 359
consensus_3190#1      GCAGAGAAAAGGGATCGGTAGAGAGATATTAAATCGCAGTAACGTTT--TGTACTG-CAA 73
                        **   ** *  *     **  * ** * ** **     * *  *     *  **  * 

consensus_3190#0      TCAAATTAAAATCGAAAGCGCCCTCTCAATCCATCAAAAGCCAATCAGTTTGTGCGTCTT 419
consensus_3190#1      TGCGATCACCAACTCAGCCACACTC--AGCCCGTGTAATGT--ATGTGTTTATGTAT-TT 128
                      *   ** *  * *  *  * * ***  *  ** *  ** *   **  **** **  * **

consensus_3190#0      AGTGTAGATCTACTAAATCTTTTCTCTTAGT--AAGCCTGCGCTGGCGATACATGGTTTT 477
consensus_3190#1      GTTTTAGCTAT-TTAAAAAAATACATTTAATCGAAGCGTACATCGCAGGCATAAGGATTC 187
                        * *** * *  ****    * *  *** *  **** * *   *  *  * * ** ** 

consensus_3190#0      TGATGACAAACTTCTTCATGCAGCGCCCAATATTCGCAGTCAGTACCACAGAGAGAGAGA 537
consensus_3190#1      -----ACTGGGTTTAAACAATCGCGACAAAACCAAGCAA--AACATTCTGGGGAAAGAAA 240
                           **    **         *** * **     ***   *  *     * ** *** *

consensus_3190#0      GCTATCTGTTTGCCATGTTTAAGTTTCCTACTGCAAACTTTTACCACTTCTATCACTCTA 597
consensus_3190#1      AACGTC---TTACCGTACTTGTACTAAAAACCAACATCATTCATACTGTCTATCTCCCAC 297
                          **   ** ** *  **    *    **    * * ** *     ****** * *  

consensus_3190#0      CGTCTACTAATACACCTTCTTCCG-ATTACTACTATCATACACTATCACACTAATAGTGC 656
consensus_3190#1      CAAATCGTAATCCCTTTCCCTTTACATAGTTAATAGAACAACTTCCGAAACAAAACAAAA 357
                      *   *  **** *   * * *    **   ** **  * *   *   * ** **      

consensus_3190#0      ACTGCAATGCTCGAAACTCTTGTCAGTTCTGAAAACGCAATCTTTTTATCTGTTCAACCC 716
consensus_3190#1      AACATATATTATTAGACTAATGGAAGCAGAGAGGAGGTGAATTGTTTCTTTTTTT----T 413
                      *    *       * ***  **  **    **  * *  *  * *** * * **      

consensus_3190#0      GATCGTATAACTTGTACTAAAACTGTGGACAAAAAAACACACACACACACACACAGAAAG 776
consensus_3190#1      TTTTTTGTTGTCCGTTC---AATTATTTACAATCACAAGTACATTGTGAACGATGGTCAG 470
                        *  * *     ** *   ** * *  ****  * *   ***     *   *  *  **

consensus_3190#0      CTAGTTTTTACATTAACGACAAGCAAAATAAACCCTCGTGTTGTGAATAGTAATGCAGTG 836
consensus_3190#1      CCAGACCGATGGATTGCAAAATACATACTAAAAACAAAAGA-GTGAATGCGTTTTCAATG 529
                      * **         *  * * *  ** * ****  *    *  ******     * ** **

consensus_3190#0      GCGCAGAGAAAAGGATCGGTAAGAGAGATATTAAAATCGCAGTAAACGTTNTTGTA 892
consensus_3190#1      -CAATTAAAATGCCATCATCAG---------------------------------- 550
                       *    * **    ***   *